EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032288 (Gene tree)
Gene ID: 102462
Gene Symbol: Imp3
Alias: 1190002L16Rik|Imp3
Full Name: IMP3%2C U3 small nucleolar ribonucleoprotein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 924 bases
Position: chr9:56937475-56938398
Accession: 1916119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000034827	S4	PF01479.25	1.8e-08	1	1
ENSMUSP00000034827	Ribosomal_S4	PF00163.19	3.3e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000034827	-	924	-	ENSMUSP00000034827	184 (aa)	-	Q921Y2

Gene Model

Click here to download ENSMUSG00000032288's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032288's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000032288	Imp3	66	31.707	ENSMUSG00000006333	Rps9	81	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032288	Imp3	100	67.391	ENSAPOG00000014720	imp3	100	67.391	Acanthochromis_polyacanthus
ENSMUSG00000032288	Imp3	100	95.652	ENSAMEG00000019247	IMP3	100	95.652	Ailuropoda_melanoleuca
ENSMUSG00000032288	Imp3	98	66.667	ENSACIG00000022070	imp3	96	66.667	Amphilophus_citrinellus
ENSMUSG00000032288	Imp3	100	68.478	ENSAOCG00000015761	imp3	100	68.478	Amphiprion_ocellaris
ENSMUSG00000032288	Imp3	99	68.132	ENSAPEG00000005250	imp3	99	68.132	Amphiprion_percula
ENSMUSG00000032288	Imp3	100	67.935	ENSATEG00000020021	imp3	100	67.935	Anabas_testudineus
ENSMUSG00000032288	Imp3	99	75.135	ENSACAG00000016259	IMP3	99	75.135	Anolis_carolinensis
ENSMUSG00000032288	Imp3	100	96.196	ENSANAG00000016669	-	100	96.196	Aotus_nancymaae
ENSMUSG00000032288	Imp3	100	82.065	ENSANAG00000036874	-	100	82.065	Aotus_nancymaae
ENSMUSG00000032288	Imp3	100	69.565	ENSACLG00000009929	imp3	100	69.565	Astatotilapia_calliptera
ENSMUSG00000032288	Imp3	96	69.318	ENSAMXG00000018715	imp3	99	69.318	Astyanax_mexicanus
ENSMUSG00000032288	Imp3	99	50.549	WBGene00016740	C48B6.2	99	50.549	Caenorhabditis_elegans
ENSMUSG00000032288	Imp3	100	96.196	ENSCJAG00000044585	IMP3	100	96.196	Callithrix_jacchus
ENSMUSG00000032288	Imp3	100	94.565	ENSCAFG00000018039	IMP3	82	94.565	Canis_familiaris
ENSMUSG00000032288	Imp3	100	71.739	ENSCAFG00020006737	-	100	71.204	Canis_lupus_dingo
ENSMUSG00000032288	Imp3	100	94.565	ENSCAFG00020003760	-	100	94.565	Canis_lupus_dingo
ENSMUSG00000032288	Imp3	100	96.739	ENSCHIG00000006295	IMP3	100	96.739	Capra_hircus
ENSMUSG00000032288	Imp3	100	97.283	ENSTSYG00000005503	IMP3	100	97.283	Carlito_syrichta
ENSMUSG00000032288	Imp3	100	96.196	ENSCPOG00000012016	IMP3	100	96.196	Cavia_porcellus
ENSMUSG00000032288	Imp3	100	96.196	ENSCCAG00000002712	-	100	96.196	Cebus_capucinus
ENSMUSG00000032288	Imp3	98	82.873	ENSCCAG00000023378	-	99	82.286	Cebus_capucinus
ENSMUSG00000032288	Imp3	100	96.196	ENSCATG00000015188	IMP3	100	96.196	Cercocebus_atys
ENSMUSG00000032288	Imp3	100	96.196	ENSCSAG00000019732	IMP3	100	96.196	Chlorocebus_sabaeus
ENSMUSG00000032288	Imp3	100	96.196	ENSCHOG00000012046	IMP3	100	96.196	Choloepus_hoffmanni
ENSMUSG00000032288	Imp3	99	74.863	ENSCPBG00000021662	IMP3	99	74.863	Chrysemys_picta_bellii
ENSMUSG00000032288	Imp3	98	60.221	ENSCING00000004233	-	99	60.221	Ciona_intestinalis
ENSMUSG00000032288	Imp3	98	62.983	ENSCSAVG00000000698	-	99	62.983	Ciona_savignyi
ENSMUSG00000032288	Imp3	100	96.196	ENSCANG00000018342	IMP3	100	96.196	Colobus_angolensis_palliatus
ENSMUSG00000032288	Imp3	100	98.913	ENSCGRG00001001326	Imp3	100	98.913	Cricetulus_griseus_chok1gshd
ENSMUSG00000032288	Imp3	100	98.913	ENSCGRG00000018907	Imp3	100	98.913	Cricetulus_griseus_crigri
ENSMUSG00000032288	Imp3	99	67.582	ENSCSEG00000017200	imp3	99	67.582	Cynoglossus_semilaevis
ENSMUSG00000032288	Imp3	100	61.780	ENSCVAG00000019511	imp3	100	61.780	Cyprinodon_variegatus
ENSMUSG00000032288	Imp3	100	68.478	ENSDARG00000115266	imp3	100	68.478	Danio_rerio
ENSMUSG00000032288	Imp3	100	95.109	ENSDNOG00000015787	IMP3	81	95.109	Dasypus_novemcinctus
ENSMUSG00000032288	Imp3	100	95.109	ENSDORG00000029301	Imp3	100	95.109	Dipodomys_ordii
ENSMUSG00000032288	Imp3	99	58.242	FBgn0034232	CG4866	100	58.242	Drosophila_melanogaster
ENSMUSG00000032288	Imp3	100	94.022	ENSETEG00000004278	IMP3	100	94.022	Echinops_telfairi
ENSMUSG00000032288	Imp3	99	67.582	ENSEBUG00000002343	imp3	99	67.582	Eptatretus_burgeri
ENSMUSG00000032288	Imp3	100	96.196	ENSEASG00005015693	IMP3	100	96.196	Equus_asinus_asinus
ENSMUSG00000032288	Imp3	100	96.739	ENSECAG00000015786	IMP3	100	96.739	Equus_caballus
ENSMUSG00000032288	Imp3	99	67.582	ENSELUG00000023264	imp3	99	67.582	Esox_lucius
ENSMUSG00000032288	Imp3	100	96.739	ENSFCAG00000040328	IMP3	100	96.739	Felis_catus
ENSMUSG00000032288	Imp3	71	67.424	ENSFALG00000014811	IMP3	100	67.424	Ficedula_albicollis
ENSMUSG00000032288	Imp3	100	95.652	ENSFDAG00000018422	IMP3	100	95.652	Fukomys_damarensis
ENSMUSG00000032288	Imp3	100	68.478	ENSFHEG00000016954	imp3	100	68.478	Fundulus_heteroclitus
ENSMUSG00000032288	Imp3	99	65.934	ENSGMOG00000018162	imp3	99	65.934	Gadus_morhua
ENSMUSG00000032288	Imp3	100	66.486	ENSGALG00000040238	IMP3	100	66.486	Gallus_gallus
ENSMUSG00000032288	Imp3	100	67.935	ENSGAFG00000007425	imp3	100	67.935	Gambusia_affinis
ENSMUSG00000032288	Imp3	99	67.582	ENSGACG00000015998	imp3	99	67.582	Gasterosteus_aculeatus
ENSMUSG00000032288	Imp3	99	74.863	ENSGAGG00000008163	IMP3	99	74.863	Gopherus_agassizii
ENSMUSG00000032288	Imp3	100	96.196	ENSGGOG00000025122	IMP3	100	96.196	Gorilla_gorilla
ENSMUSG00000032288	Imp3	100	69.565	ENSHBUG00000018453	imp3	100	69.565	Haplochromis_burtoni
ENSMUSG00000032288	Imp3	100	95.652	ENSHGLG00000019824	IMP3	100	95.652	Heterocephalus_glaber_female
ENSMUSG00000032288	Imp3	100	95.652	ENSHGLG00100020660	IMP3	100	95.652	Heterocephalus_glaber_male
ENSMUSG00000032288	Imp3	100	66.304	ENSHCOG00000020565	imp3	100	66.304	Hippocampus_comes
ENSMUSG00000032288	Imp3	99	70.330	ENSIPUG00000013142	imp3	99	70.330	Ictalurus_punctatus
ENSMUSG00000032288	Imp3	100	96.739	ENSSTOG00000030143	IMP3	100	96.739	Ictidomys_tridecemlineatus
ENSMUSG00000032288	Imp3	100	67.391	ENSKMAG00000001956	imp3	100	67.391	Kryptolebias_marmoratus
ENSMUSG00000032288	Imp3	99	67.582	ENSLBEG00000008178	imp3	99	67.582	Labrus_bergylta
ENSMUSG00000032288	Imp3	100	75.000	ENSLACG00000022148	imp3	100	75.000	Latimeria_chalumnae
ENSMUSG00000032288	Imp3	99	69.231	ENSLOCG00000010237	imp3	99	69.231	Lepisosteus_oculatus
ENSMUSG00000032288	Imp3	100	94.565	ENSLAFG00000004425	IMP3	100	94.565	Loxodonta_africana
ENSMUSG00000032288	Imp3	100	96.196	ENSMFAG00000008867	IMP3	100	96.196	Macaca_fascicularis
ENSMUSG00000032288	Imp3	100	96.196	ENSMMUG00000016103	IMP3	100	96.196	Macaca_mulatta
ENSMUSG00000032288	Imp3	100	96.196	ENSMNEG00000026328	IMP3	100	96.196	Macaca_nemestrina
ENSMUSG00000032288	Imp3	100	68.478	ENSMAMG00000003215	imp3	100	68.478	Mastacembelus_armatus
ENSMUSG00000032288	Imp3	100	69.565	ENSMZEG00005005544	imp3	100	69.565	Maylandia_zebra
ENSMUSG00000032288	Imp3	100	97.826	ENSMAUG00000010279	Imp3	100	97.826	Mesocricetus_auratus
ENSMUSG00000032288	Imp3	100	95.652	ENSMICG00000044149	IMP3	100	95.652	Microcebus_murinus
ENSMUSG00000032288	Imp3	100	97.826	ENSMOCG00000008647	Imp3	100	97.826	Microtus_ochrogaster
ENSMUSG00000032288	Imp3	96	68.750	ENSMMOG00000018117	imp3	84	68.750	Mola_mola
ENSMUSG00000032288	Imp3	100	85.870	ENSMODG00000025193	IMP3	100	85.870	Monodelphis_domestica
ENSMUSG00000032288	Imp3	99	69.780	ENSMALG00000006505	imp3	99	69.780	Monopterus_albus
ENSMUSG00000032288	Imp3	100	99.457	MGP_CAROLIEiJ_G0032258	Imp3	100	99.457	Mus_caroli
ENSMUSG00000032288	Imp3	100	99.457	MGP_PahariEiJ_G0015125	Imp3	100	99.457	Mus_pahari
ENSMUSG00000032288	Imp3	100	100.000	MGP_SPRETEiJ_G0033398	Imp3	100	100.000	Mus_spretus
ENSMUSG00000032288	Imp3	100	95.652	ENSMPUG00000020147	IMP3	100	95.652	Mustela_putorius_furo
ENSMUSG00000032288	Imp3	100	95.652	ENSMLUG00000014032	IMP3	100	95.652	Myotis_lucifugus
ENSMUSG00000032288	Imp3	100	95.652	ENSNGAG00000017248	Imp3	100	95.652	Nannospalax_galili
ENSMUSG00000032288	Imp3	100	69.565	ENSNBRG00000004060	imp3	100	69.565	Neolamprologus_brichardi
ENSMUSG00000032288	Imp3	100	96.739	ENSOPRG00000015906	-	100	96.739	Ochotona_princeps
ENSMUSG00000032288	Imp3	100	96.196	ENSODEG00000020194	IMP3	100	96.196	Octodon_degus
ENSMUSG00000032288	Imp3	100	69.022	ENSONIG00000010661	imp3	100	69.022	Oreochromis_niloticus
ENSMUSG00000032288	Imp3	100	97.283	ENSOCUG00000004690	IMP3	100	97.283	Oryctolagus_cuniculus
ENSMUSG00000032288	Imp3	100	69.022	ENSORLG00000004484	imp3	100	69.022	Oryzias_latipes
ENSMUSG00000032288	Imp3	100	69.022	ENSORLG00020003771	imp3	100	69.022	Oryzias_latipes_hni
ENSMUSG00000032288	Imp3	100	68.478	ENSORLG00015006933	imp3	100	68.478	Oryzias_latipes_hsok
ENSMUSG00000032288	Imp3	100	69.022	ENSOMEG00000016160	imp3	100	69.022	Oryzias_melastigma
ENSMUSG00000032288	Imp3	100	95.652	ENSOGAG00000004917	IMP3	100	95.652	Otolemur_garnettii
ENSMUSG00000032288	Imp3	100	96.196	ENSPPAG00000009241	IMP3	100	96.196	Pan_paniscus
ENSMUSG00000032288	Imp3	100	96.739	ENSPPRG00000018701	IMP3	100	96.739	Panthera_pardus
ENSMUSG00000032288	Imp3	100	96.196	ENSPTRG00000052235	IMP3	100	96.196	Pan_troglodytes
ENSMUSG00000032288	Imp3	100	96.196	ENSPANG00000013668	IMP3	100	96.196	Papio_anubis
ENSMUSG00000032288	Imp3	99	69.780	ENSPKIG00000007169	imp3	99	69.780	Paramormyrops_kingsleyae
ENSMUSG00000032288	Imp3	100	60.000	ENSPMGG00000009379	imp3	100	60.000	Periophthalmus_magnuspinnatus
ENSMUSG00000032288	Imp3	100	98.370	ENSPEMG00000013003	Imp3	100	98.370	Peromyscus_maniculatus_bairdii
ENSMUSG00000032288	Imp3	100	68.478	ENSPFOG00000016529	imp3	100	68.478	Poecilia_formosa
ENSMUSG00000032288	Imp3	100	68.478	ENSPLAG00000013831	imp3	100	68.478	Poecilia_latipinna
ENSMUSG00000032288	Imp3	99	68.681	ENSPMEG00000000797	imp3	99	68.681	Poecilia_mexicana
ENSMUSG00000032288	Imp3	100	67.935	ENSPREG00000006885	imp3	100	67.935	Poecilia_reticulata
ENSMUSG00000032288	Imp3	100	95.652	ENSPPYG00000006664	IMP3	100	95.652	Pongo_abelii
ENSMUSG00000032288	Imp3	100	94.565	ENSPCAG00000006920	IMP3	100	94.565	Procavia_capensis
ENSMUSG00000032288	Imp3	100	96.196	ENSPCOG00000012367	IMP3	100	96.196	Propithecus_coquereli
ENSMUSG00000032288	Imp3	100	95.652	ENSPVAG00000010036	IMP3	100	95.652	Pteropus_vampyrus
ENSMUSG00000032288	Imp3	100	69.565	ENSPNYG00000000324	imp3	100	69.565	Pundamilia_nyererei
ENSMUSG00000032288	Imp3	99	69.231	ENSPNAG00000017113	imp3	99	69.231	Pygocentrus_nattereri
ENSMUSG00000032288	Imp3	100	98.913	ENSRNOG00000017460	Imp3	100	98.913	Rattus_norvegicus
ENSMUSG00000032288	Imp3	100	95.652	ENSRBIG00000024522	IMP3	100	95.652	Rhinopithecus_bieti
ENSMUSG00000032288	Imp3	100	95.652	ENSRROG00000024157	IMP3	100	95.652	Rhinopithecus_roxellana
ENSMUSG00000032288	Imp3	99	53.552	YHR148W	-	99	53.552	Saccharomyces_cerevisiae
ENSMUSG00000032288	Imp3	100	96.196	ENSSBOG00000006542	-	100	96.196	Saimiri_boliviensis_boliviensis
ENSMUSG00000032288	Imp3	100	82.065	ENSSBOG00000026404	-	100	82.065	Saimiri_boliviensis_boliviensis
ENSMUSG00000032288	Imp3	99	85.792	ENSSHAG00000006200	IMP3	99	85.792	Sarcophilus_harrisii
ENSMUSG00000032288	Imp3	99	70.879	ENSSFOG00015012483	imp3	99	70.879	Scleropages_formosus
ENSMUSG00000032288	Imp3	100	68.478	ENSSMAG00000007865	imp3	100	68.478	Scophthalmus_maximus
ENSMUSG00000032288	Imp3	100	69.022	ENSSDUG00000010594	imp3	100	69.022	Seriola_dumerili
ENSMUSG00000032288	Imp3	100	67.935	ENSSLDG00000015587	imp3	100	67.935	Seriola_lalandi_dorsalis
ENSMUSG00000032288	Imp3	100	96.739	ENSSARG00000009657	IMP3	100	96.739	Sorex_araneus
ENSMUSG00000032288	Imp3	100	69.022	ENSSPAG00000002088	imp3	100	69.022	Stegastes_partitus
ENSMUSG00000032288	Imp3	100	65.405	ENSTGUG00000013228	IMP3	100	65.405	Taeniopygia_guttata
ENSMUSG00000032288	Imp3	99	68.681	ENSTRUG00000025783	imp3	99	68.681	Takifugu_rubripes
ENSMUSG00000032288	Imp3	100	96.196	ENSUAMG00000022724	IMP3	100	96.196	Ursus_americanus
ENSMUSG00000032288	Imp3	100	96.196	ENSUMAG00000003736	IMP3	100	96.196	Ursus_maritimus
ENSMUSG00000032288	Imp3	100	94.022	ENSVVUG00000019589	IMP3	100	94.022	Vulpes_vulpes
ENSMUSG00000032288	Imp3	96	66.477	ENSXCOG00000007392	imp3	96	66.477	Xiphophorus_couchianus
ENSMUSG00000032288	Imp3	100	67.935	ENSXMAG00000023049	imp3	100	67.935	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0006364	rRNA processing	12655004.	IGI	Process
GO:0019843	rRNA binding	-	IEA	Function
GO:0030515	snoRNA binding	21873635.	IBA	Function
GO:0030684	preribosome	-	ISO	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034457	Mpp10 complex	21873635.	IBA	Component
GO:0034457	Mpp10 complex	-	ISO	Component
GO:0042254	ribosome biogenesis	-	IEA	Process