EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028741 (Gene tree)
Gene ID
69902
Gene Symbol
Mrto4
Alias
2610012O22Rik|Mrt4
Full Name
mRNA turnover 4%2C ribosome maturation factor
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
5142 bases
Position
chr4:139347435-139352576
Accession
1917152
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000030513Ribosomal_L10PF00466.202.4e-2011
ENSMUSP00000099561Ribosomal_L10PF00466.202.5e-2011
ENSMUSP00000121453Ribosomal_L10PF00466.209.9e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000128239-678--- (aa)--
ENSMUST00000131052-835--- (aa)--
ENSMUST00000123968-662--- (aa)--
ENSMUST00000030513-930-ENSMUSP00000030513238 (aa)-A2AMV1
ENSMUST00000139749-756--- (aa)--
ENSMUST00000102503-1221XM_006539162ENSMUSP00000099561239 (aa)-Q9D0I8
ENSMUST00000155257-470-ENSMUSP0000012145361 (aa)-D6RCI7
Gene Model
Click here to download ENSMUSG00000028741's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028741's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028741Mrto410098.361ENSG00000053372MRTO49395.516Homo_sapiens
ENSMUSG00000028741Mrto47480.000ENSAPOG00000013189-7875.817Acanthochromis_polyacanthus
ENSMUSG00000028741Mrto47480.000ENSAPOG00000013290-7875.817Acanthochromis_polyacanthus
ENSMUSG00000028741Mrto410081.967ENSAPOG00000011387mrto49079.167Acanthochromis_polyacanthus
ENSMUSG00000028741Mrto410098.361ENSAMEG00000003014MRTO49395.964Ailuropoda_melanoleuca
ENSMUSG00000028741Mrto48476.471ENSAMEG00000014981-10064.840Ailuropoda_melanoleuca
ENSMUSG00000028741Mrto410080.328ENSACIG00000008213mrto49077.778Amphilophus_citrinellus
ENSMUSG00000028741Mrto410081.967ENSAOCG00000006483mrto48279.227Amphiprion_ocellaris
ENSMUSG00000028741Mrto410081.967ENSAPEG00000004866mrto49279.167Amphiprion_percula
ENSMUSG00000028741Mrto410080.328ENSATEG00000024976mrto49079.167Anabas_testudineus
ENSMUSG00000028741Mrto47486.667ENSAPLG00000013861MRTO48881.935Anas_platyrhynchos
ENSMUSG00000028741Mrto4100100.000ENSANAG00000029674MRTO49395.067Aotus_nancymaae
ENSMUSG00000028741Mrto410077.049ENSACLG00000016523mrto49077.778Astatotilapia_calliptera
ENSMUSG00000028741Mrto410081.967ENSAMXG00000003899mrto49278.733Astyanax_mexicanus
ENSMUSG00000028741Mrto4100100.000ENSBTAG00000011951MRTO410096.653Bos_taurus
ENSMUSG00000028741Mrto4100100.000ENSCJAG00000006812MRTO49395.516Callithrix_jacchus
ENSMUSG00000028741Mrto410096.721ENSCAFG00000015189-9394.619Canis_familiaris
ENSMUSG00000028741Mrto48582.692ENSCAFG00000009080-10067.580Canis_familiaris
ENSMUSG00000028741Mrto410091.803ENSCAFG00000000532-9384.753Canis_familiaris
ENSMUSG00000028741Mrto410096.721ENSCAFG00020008173MRTO49394.619Canis_lupus_dingo
ENSMUSG00000028741Mrto4100100.000ENSCHIG00000014751MRTO410096.234Capra_hircus
ENSMUSG00000028741Mrto410067.213ENSCHIG00000010639-9164.151Capra_hircus
ENSMUSG00000028741Mrto49898.333ENSTSYG00000013413MRTO49395.067Carlito_syrichta
ENSMUSG00000028741Mrto410098.361ENSCAPG00000012648MRTO48893.500Cavia_aperea
ENSMUSG00000028741Mrto410098.361ENSCPOG00000033237MRTO49395.982Cavia_porcellus
ENSMUSG00000028741Mrto4100100.000ENSCCAG00000036206MRTO49395.067Cebus_capucinus
ENSMUSG00000028741Mrto49788.136ENSCATG00000030492-9379.279Cercocebus_atys
ENSMUSG00000028741Mrto410098.361ENSCLAG00000001997MRTO49395.089Chinchilla_lanigera
ENSMUSG00000028741Mrto410096.721ENSCSAG00000000876-9393.274Chlorocebus_sabaeus
ENSMUSG00000028741Mrto410098.361ENSCSAG00000018596-9393.274Chlorocebus_sabaeus
ENSMUSG00000028741Mrto410088.525ENSCPBG00000023562MRTO49086.697Chrysemys_picta_bellii
ENSMUSG00000028741Mrto410067.213ENSCSAVG00000011770-7863.014Ciona_savignyi
ENSMUSG00000028741Mrto49387.444ENSCANG00000005353-9387.444Colobus_angolensis_palliatus
ENSMUSG00000028741Mrto410098.361ENSCANG00000002395-9395.067Colobus_angolensis_palliatus
ENSMUSG00000028741Mrto49791.525ENSCGRG00001001286-9387.556Cricetulus_griseus_chok1gshd
ENSMUSG00000028741Mrto4100100.000ENSCGRG00001005758-10098.326Cricetulus_griseus_chok1gshd
ENSMUSG00000028741Mrto4100100.000ENSCGRG00000010649-10096.653Cricetulus_griseus_crigri
ENSMUSG00000028741Mrto49791.525ENSCGRG00000001527-9387.556Cricetulus_griseus_crigri
ENSMUSG00000028741Mrto410078.689ENSCSEG00000021629mrto49177.982Cynoglossus_semilaevis
ENSMUSG00000028741Mrto410078.689ENSCVAG00000012249mrto49276.606Cyprinodon_variegatus
ENSMUSG00000028741Mrto410078.689ENSDARG00000007130mrto49175.455Danio_rerio
ENSMUSG00000028741Mrto410086.885ENSDNOG00000030871-9186.111Dasypus_novemcinctus
ENSMUSG00000028741Mrto410085.246ENSDNOG00000045395-9173.059Dasypus_novemcinctus
ENSMUSG00000028741Mrto410098.361ENSDNOG00000010119-9395.067Dasypus_novemcinctus
ENSMUSG00000028741Mrto410096.721ENSDORG00000025382Mrto49392.825Dipodomys_ordii
ENSMUSG00000028741Mrto410096.721ENSETEG00000001675MRTO49393.750Echinops_telfairi
ENSMUSG00000028741Mrto410098.361ENSEASG00005014967MRTO49394.619Equus_asinus_asinus
ENSMUSG00000028741Mrto4100100.000ENSECAG00000012598MRTO49394.619Equus_caballus
ENSMUSG00000028741Mrto47297.727ENSEEUG00000013520MRTO49375.701Erinaceus_europaeus
ENSMUSG00000028741Mrto410073.770ENSELUG00000011152mrto49275.566Esox_lucius
ENSMUSG00000028741Mrto410098.361ENSFCAG00000008771MRTO49494.619Felis_catus
ENSMUSG00000028741Mrto410086.885ENSFALG00000010619MRTO49279.186Ficedula_albicollis
ENSMUSG00000028741Mrto4100100.000ENSFDAG00000013300MRTO49396.875Fukomys_damarensis
ENSMUSG00000028741Mrto410075.410ENSFHEG00000022920mrto49376.147Fundulus_heteroclitus
ENSMUSG00000028741Mrto410078.689ENSGMOG00000001422mrto49476.852Gadus_morhua
ENSMUSG00000028741Mrto410086.885ENSGALG00000003991MRTO49481.448Gallus_gallus
ENSMUSG00000028741Mrto410078.689ENSGAFG00000012570mrto49275.688Gambusia_affinis
ENSMUSG00000028741Mrto410080.328ENSGACG00000001672mrto49277.064Gasterosteus_aculeatus
ENSMUSG00000028741Mrto410088.525ENSGAGG00000012997MRTO48886.124Gopherus_agassizii
ENSMUSG00000028741Mrto410098.361ENSGGOG00000000533MRTO49395.067Gorilla_gorilla
ENSMUSG00000028741Mrto49380.702ENSGGOG00000036991-8567.606Gorilla_gorilla
ENSMUSG00000028741Mrto49474.667ENSGGOG00000042625-9274.888Gorilla_gorilla
ENSMUSG00000028741Mrto410077.049ENSHBUG00000009670mrto49076.852Haplochromis_burtoni
ENSMUSG00000028741Mrto410098.361ENSHGLG00000012157MRTO49495.536Heterocephalus_glaber_female
ENSMUSG00000028741Mrto410098.361ENSHGLG00100014484MRTO49495.536Heterocephalus_glaber_male
ENSMUSG00000028741Mrto410075.410ENSHCOG00000019894mrto49375.566Hippocampus_comes
ENSMUSG00000028741Mrto410080.328ENSIPUG00000002957mrto49079.630Ictalurus_punctatus
ENSMUSG00000028741Mrto4100100.000ENSSTOG00000028112MRTO49396.413Ictidomys_tridecemlineatus
ENSMUSG00000028741Mrto410098.361ENSJJAG00000017998Mrto49392.411Jaculus_jaculus
ENSMUSG00000028741Mrto410077.049ENSKMAG00000010148mrto49275.229Kryptolebias_marmoratus
ENSMUSG00000028741Mrto410077.049ENSLBEG00000025010mrto49178.605Labrus_bergylta
ENSMUSG00000028741Mrto410091.803ENSLACG00000019155MRTO49381.900Latimeria_chalumnae
ENSMUSG00000028741Mrto410085.246ENSLOCG00000004468mrto48878.341Lepisosteus_oculatus
ENSMUSG00000028741Mrto4100100.000ENSLAFG00000010416MRTO49395.067Loxodonta_africana
ENSMUSG00000028741Mrto410096.721ENSMFAG00000033225-9394.170Macaca_fascicularis
ENSMUSG00000028741Mrto410077.049ENSMMUG00000044851-9271.300Macaca_mulatta
ENSMUSG00000028741Mrto410096.721ENSMMUG00000038335MRTO49394.170Macaca_mulatta
ENSMUSG00000028741Mrto410096.721ENSMNEG00000032783-9394.170Macaca_nemestrina
ENSMUSG00000028741Mrto410098.361ENSMLEG00000023273-9394.619Mandrillus_leucophaeus
ENSMUSG00000028741Mrto410080.328ENSMAMG00000014839mrto49079.167Mastacembelus_armatus
ENSMUSG00000028741Mrto410077.049ENSMZEG00005013929mrto49077.778Maylandia_zebra
ENSMUSG00000028741Mrto410085.246ENSMGAG00000005361MRTO49280.995Meleagris_gallopavo
ENSMUSG00000028741Mrto4100100.000ENSMAUG00000019627-10098.326Mesocricetus_auratus
ENSMUSG00000028741Mrto410082.540ENSMICG00000033640-10083.415Microcebus_murinus
ENSMUSG00000028741Mrto410098.361ENSMICG00000004019MRTO49395.067Microcebus_murinus
ENSMUSG00000028741Mrto410098.361ENSMOCG00000018413Mrto49296.023Microtus_ochrogaster
ENSMUSG00000028741Mrto410080.328ENSMMOG00000010735mrto48977.990Mola_mola
ENSMUSG00000028741Mrto410091.803ENSMODG00000015874MRTO49188.688Monodelphis_domestica
ENSMUSG00000028741Mrto410080.328ENSMALG00000007769mrto49877.982Monopterus_albus
ENSMUSG00000028741Mrto4100100.000MGP_CAROLIEiJ_G0026711Mrto4100100.000Mus_caroli
ENSMUSG00000028741Mrto49997.899MGP_PahariEiJ_G0029042Mrto49997.899Mus_pahari
ENSMUSG00000028741Mrto4100100.000MGP_SPRETEiJ_G0027691Mrto410099.163Mus_spretus
ENSMUSG00000028741Mrto410096.721ENSMPUG00000016181MRTO49393.274Mustela_putorius_furo
ENSMUSG00000028741Mrto410098.361ENSMLUG00000001566-9395.516Myotis_lucifugus
ENSMUSG00000028741Mrto410095.082ENSMLUG00000025001-9393.722Myotis_lucifugus
ENSMUSG00000028741Mrto410098.361ENSNGAG00000011660Mrto49396.413Nannospalax_galili
ENSMUSG00000028741Mrto410077.049ENSNBRG00000021435mrto49077.778Neolamprologus_brichardi
ENSMUSG00000028741Mrto47497.778ENSNLEG00000034965-8691.250Nomascus_leucogenys
ENSMUSG00000028741Mrto49382.511ENSNLEG00000027896-9382.511Nomascus_leucogenys
ENSMUSG00000028741Mrto49895.000ENSNLEG00000018006-9485.650Nomascus_leucogenys
ENSMUSG00000028741Mrto410091.803ENSMEUG00000000027MRTO410092.073Notamacropus_eugenii
ENSMUSG00000028741Mrto410096.721ENSOPRG00000012746MRTO49493.722Ochotona_princeps
ENSMUSG00000028741Mrto49388.393ENSODEG00000011537-9388.393Octodon_degus
ENSMUSG00000028741Mrto410098.361ENSODEG00000015379-9394.643Octodon_degus
ENSMUSG00000028741Mrto410096.721ENSODEG00000019157-9393.750Octodon_degus
ENSMUSG00000028741Mrto410085.246ENSODEG00000014387-9387.054Octodon_degus
ENSMUSG00000028741Mrto410090.164ENSODEG00000014016-8279.911Octodon_degus
ENSMUSG00000028741Mrto410078.689ENSONIG00000014318mrto49078.241Oreochromis_niloticus
ENSMUSG00000028741Mrto410086.885ENSOANG00000015345MRTO48980.189Ornithorhynchus_anatinus
ENSMUSG00000028741Mrto410095.082ENSOCUG00000000274MRTO49394.170Oryctolagus_cuniculus
ENSMUSG00000028741Mrto410080.328ENSORLG00000027922mrto49178.440Oryzias_latipes
ENSMUSG00000028741Mrto410080.328ENSORLG00020019412mrto49178.440Oryzias_latipes_hni
ENSMUSG00000028741Mrto410080.328ENSORLG00015015309mrto49178.440Oryzias_latipes_hsok
ENSMUSG00000028741Mrto410081.967ENSOMEG00000021110mrto49277.982Oryzias_melastigma
ENSMUSG00000028741Mrto49772.881ENSOGAG00000027996-8963.721Otolemur_garnettii
ENSMUSG00000028741Mrto410098.361ENSOGAG00000010713-9395.964Otolemur_garnettii
ENSMUSG00000028741Mrto410098.361ENSPPAG00000043731MRTO49395.067Pan_paniscus
ENSMUSG00000028741Mrto49384.211ENSPPAG00000039572-9266.816Pan_paniscus
ENSMUSG00000028741Mrto49992.857ENSPPRG00000024765MRTO49493.722Panthera_pardus
ENSMUSG00000028741Mrto410098.361ENSPTIG00000016208MRTO49495.516Panthera_tigris_altaica
ENSMUSG00000028741Mrto410098.361ENSPTRG00000000262MRTO49395.516Pan_troglodytes
ENSMUSG00000028741Mrto49384.211ENSPTRG00000046027-9267.265Pan_troglodytes
ENSMUSG00000028741Mrto49383.857ENSPANG00000017838-9383.857Papio_anubis
ENSMUSG00000028741Mrto410085.246ENSPANG00000011596-9786.036Papio_anubis
ENSMUSG00000028741Mrto410080.328ENSPKIG00000017917mrto49277.273Paramormyrops_kingsleyae
ENSMUSG00000028741Mrto410090.164ENSPSIG00000015125MRTO49084.483Pelodiscus_sinensis
ENSMUSG00000028741Mrto49072.018ENSPMGG00000013461mrto48972.018Periophthalmus_magnuspinnatus
ENSMUSG00000028741Mrto410087.500ENSPEMG00000023720-9391.593Peromyscus_maniculatus_bairdii
ENSMUSG00000028741Mrto4100100.000ENSPEMG00000010459-10098.745Peromyscus_maniculatus_bairdii
ENSMUSG00000028741Mrto410093.443ENSPCIG00000003652MRTO49187.330Phascolarctos_cinereus
ENSMUSG00000028741Mrto410080.328ENSPFOG00000013266mrto49276.606Poecilia_formosa
ENSMUSG00000028741Mrto410080.328ENSPLAG00000016285mrto49276.606Poecilia_latipinna
ENSMUSG00000028741Mrto410080.328ENSPMEG00000003539mrto49276.147Poecilia_mexicana
ENSMUSG00000028741Mrto410080.328ENSPREG00000006249mrto49275.688Poecilia_reticulata
ENSMUSG00000028741Mrto410098.361ENSPPYG00000001795MRTO49395.516Pongo_abelii
ENSMUSG00000028741Mrto4100100.000ENSPCAG00000001458MRTO49485.650Procavia_capensis
ENSMUSG00000028741Mrto410098.361ENSPCOG00000014182MRTO49395.964Propithecus_coquereli
ENSMUSG00000028741Mrto4100100.000ENSPVAG00000005775MRTO49395.067Pteropus_vampyrus
ENSMUSG00000028741Mrto410077.049ENSPNYG00000018672mrto49077.315Pundamilia_nyererei
ENSMUSG00000028741Mrto410081.967ENSPNAG00000027733mrto49080.000Pygocentrus_nattereri
ENSMUSG00000028741Mrto4100100.000ENSRNOG00000017979Mrto49998.429Rattus_norvegicus
ENSMUSG00000028741Mrto49896.667ENSRBIG00000036159-9285.641Rhinopithecus_bieti
ENSMUSG00000028741Mrto410096.721ENSRBIG00000036806-9394.170Rhinopithecus_bieti
ENSMUSG00000028741Mrto410078.689ENSRBIG00000013434-9377.130Rhinopithecus_bieti
ENSMUSG00000028741Mrto410096.721ENSRROG00000042838-9394.170Rhinopithecus_roxellana
ENSMUSG00000028741Mrto49896.667ENSRROG00000037374-9387.444Rhinopithecus_roxellana
ENSMUSG00000028741Mrto410096.721ENSRROG00000011593-8993.722Rhinopithecus_roxellana
ENSMUSG00000028741Mrto4100100.000ENSSBOG00000022924MRTO49393.722Saimiri_boliviensis_boliviensis
ENSMUSG00000028741Mrto410095.082ENSSHAG00000008423MRTO49088.517Sarcophilus_harrisii
ENSMUSG00000028741Mrto410081.967ENSSFOG00015006887mrto49280.365Scleropages_formosus
ENSMUSG00000028741Mrto410078.689ENSSMAG00000014393mrto49079.070Scophthalmus_maximus
ENSMUSG00000028741Mrto410078.689ENSSDUG00000015362mrto49079.535Seriola_dumerili
ENSMUSG00000028741Mrto410078.689ENSSLDG00000015813mrto49079.070Seriola_lalandi_dorsalis
ENSMUSG00000028741Mrto410098.361ENSSARG00000012700MRTO49392.444Sorex_araneus
ENSMUSG00000028741Mrto410086.885ENSSPUG00000001110MRTO49284.862Sphenodon_punctatus
ENSMUSG00000028741Mrto410081.967ENSSPAG00000007811mrto49079.167Stegastes_partitus
ENSMUSG00000028741Mrto410096.721ENSSSCG00000034814MRTO49394.170Sus_scrofa
ENSMUSG00000028741Mrto410088.525ENSTGUG00000016935MRTO410080.435Taeniopygia_guttata
ENSMUSG00000028741Mrto410078.689ENSTRUG00000019838mrto49176.852Takifugu_rubripes
ENSMUSG00000028741Mrto410078.689ENSTNIG00000014802mrto49176.852Tetraodon_nigroviridis
ENSMUSG00000028741Mrto410096.721ENSTTRG00000014203MRTO49394.170Tursiops_truncatus
ENSMUSG00000028741Mrto410098.361ENSUAMG00000026191MRTO48695.327Ursus_americanus
ENSMUSG00000028741Mrto410098.361ENSUMAG00000018964MRTO49395.964Ursus_maritimus
ENSMUSG00000028741Mrto410096.721ENSVVUG00000029432MRTO49394.619Vulpes_vulpes
ENSMUSG00000028741Mrto410083.607ENSXETG00000020828mrto49279.186Xenopus_tropicalis
ENSMUSG00000028741Mrto410080.328ENSXCOG00000013521mrto49476.606Xiphophorus_couchianus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000027ribosomal large subunit assembly-IEAProcess
GO:0000956nuclear-transcribed mRNA catabolic process21873635.IBAProcess
GO:0005634nucleus-IEAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005737cytoplasm-IEAComponent
GO:0006364rRNA processing21873635.IBAProcess
GO:0042254ribosome biogenesis-IEAProcess

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