EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000020850 (Gene tree)
Gene ID
192159
Gene Symbol
Prpf8
Alias
D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l
Full Name
pre-mRNA processing factor 8
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
22634 bases
Position
chr11:75486816-75509449
Accession
2179381
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000115635RRM_4PF10598.92.9e-4811
ENSMUSP00000018449RRM_4PF10598.97.6e-4811
ENSMUSP00000099568RRM_4PF10598.97.6e-4811
ENSMUSP00000018449U5_2-snRNA_bdgPF10597.91.5e-7311
ENSMUSP00000099568U5_2-snRNA_bdgPF10597.91.5e-7311
ENSMUSP00000018449PRO8NTPF08082.113e-8611
ENSMUSP00000099568PRO8NTPF08082.113e-8611
ENSMUSP00000115635PRO8NTPF08082.113.9e-4312
ENSMUSP00000115635PRO8NTPF08082.113.9e-4322
ENSMUSP00000018449U6-snRNA_bdgPF10596.93.6e-8911
ENSMUSP00000099568U6-snRNA_bdgPF10596.93.6e-8911
ENSMUSP00000115635PROCNPF08083.116.6e-23611
ENSMUSP00000018449PROCNPF08083.113.9e-23511
ENSMUSP00000099568PROCNPF08083.113.9e-23511
ENSMUSP00000018449PRP8_domainIVPF12134.86.8e-13011
ENSMUSP00000099568PRP8_domainIVPF12134.86.8e-13011
ENSMUSP00000018449PROCTPF08084.113.1e-5311
ENSMUSP00000099568PROCTPF08084.113.1e-5311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000102510-7249-ENSMUSP000000995682335 (aa)-Q99PV0
ENSMUST00000131283-3371-ENSMUSP000001156351044 (aa)-B7ZC27
ENSMUST00000018449-7442-ENSMUSP000000184492335 (aa)-Q99PV0
ENSMUST00000133995-721--- (aa)--
Gene Model
Click here to download ENSMUSG00000020850's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020850's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000020850Prpf810099.914ENSG00000174231PRPF8100100.000Homo_sapiens
ENSMUSG00000020850Prpf810097.777ENSAPOG00000010079prpf810097.777Acanthochromis_polyacanthus
ENSMUSG00000020850Prpf810099.914ENSAMEG00000007940PRPF810099.914Ailuropoda_melanoleuca
ENSMUSG00000020850Prpf810095.507ENSACIG00000018280prpf810095.883Amphilophus_citrinellus
ENSMUSG00000020850Prpf810097.777ENSAOCG00000010725prpf810097.777Amphiprion_ocellaris
ENSMUSG00000020850Prpf810097.777ENSAPEG00000014397prpf810097.777Amphiprion_percula
ENSMUSG00000020850Prpf810097.220ENSATEG00000010062prpf810097.220Anabas_testudineus
ENSMUSG00000020850Prpf89699.466ENSAPLG00000010357PRPF810099.466Anas_platyrhynchos
ENSMUSG00000020850Prpf89993.460ENSACAG00000014784PRPF89997.477Anolis_carolinensis
ENSMUSG00000020850Prpf810099.914ENSANAG00000032629PRPF810099.914Aotus_nancymaae
ENSMUSG00000020850Prpf810097.404ENSACLG00000020858prpf810097.404Astatotilapia_calliptera
ENSMUSG00000020850Prpf810097.688ENSAMXG00000020291prpf810097.688Astyanax_mexicanus
ENSMUSG00000020850Prpf810099.914ENSBTAG00000011488PRPF810099.914Bos_taurus
ENSMUSG00000020850Prpf89986.401WBGene00004187prp-89986.486Caenorhabditis_elegans
ENSMUSG00000020850Prpf810099.914ENSCJAG00000001911PRPF810099.914Callithrix_jacchus
ENSMUSG00000020850Prpf810099.914ENSCAFG00000019221PRPF810099.914Canis_familiaris
ENSMUSG00000020850Prpf89699.911ENSCAFG00020009943PRPF810099.911Canis_lupus_dingo
ENSMUSG00000020850Prpf810099.914ENSCHIG00000017499PRPF810099.914Capra_hircus
ENSMUSG00000020850Prpf810099.914ENSTSYG00000014120PRPF810099.914Carlito_syrichta
ENSMUSG00000020850Prpf89697.684ENSCAPG00000009459PRPF89997.684Cavia_aperea
ENSMUSG00000020850Prpf810099.914ENSCPOG00000010379PRPF810099.914Cavia_porcellus
ENSMUSG00000020850Prpf810099.914ENSCCAG00000031983-10099.914Cebus_capucinus
ENSMUSG00000020850Prpf810099.914ENSCATG00000038595PRPF810099.914Cercocebus_atys
ENSMUSG00000020850Prpf810099.914ENSCLAG00000004388PRPF810099.914Chinchilla_lanigera
ENSMUSG00000020850Prpf810099.914ENSCSAG00000013929PRPF810099.914Chlorocebus_sabaeus
ENSMUSG00000020850Prpf88199.738ENSCHOG00000008590PRPF88899.738Choloepus_hoffmanni
ENSMUSG00000020850Prpf810099.443ENSCPBG00000020409PRPF810099.443Chrysemys_picta_bellii
ENSMUSG00000020850Prpf89992.874ENSCSAVG00000007825-10091.237Ciona_savignyi
ENSMUSG00000020850Prpf810099.914ENSCANG00000043088PRPF810099.914Colobus_angolensis_palliatus
ENSMUSG00000020850Prpf89294.510ENSCGRG00001017673-98100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000020850Prpf87899.753ENSCGRG00000005129Prpf810099.533Cricetulus_griseus_crigri
ENSMUSG00000020850Prpf810097.606ENSCSEG00000007905prpf810097.606Cynoglossus_semilaevis
ENSMUSG00000020850Prpf810097.566ENSDARG00000026180prpf810097.566Danio_rerio
ENSMUSG00000020850Prpf810094.904ENSDNOG00000018471PRPF89999.862Dasypus_novemcinctus
ENSMUSG00000020850Prpf810094.219ENSDORG00000006185Prpf89699.432Dipodomys_ordii
ENSMUSG00000020850Prpf89991.506FBgn0033688Prp89891.080Drosophila_melanogaster
ENSMUSG00000020850Prpf810094.433ENSETEG00000017592PRPF810094.433Echinops_telfairi
ENSMUSG00000020850Prpf89993.771ENSEBUG00000006548prpf89993.771Eptatretus_burgeri
ENSMUSG00000020850Prpf810099.914ENSEASG00005009514PRPF810099.914Equus_asinus_asinus
ENSMUSG00000020850Prpf89799.912ENSECAG00000021318PRPF810099.912Equus_caballus
ENSMUSG00000020850Prpf867100.000ENSEEUG00000012120-67100.000Erinaceus_europaeus
ENSMUSG00000020850Prpf89896.503ENSELUG00000007120prpf89996.503Esox_lucius
ENSMUSG00000020850Prpf810099.914ENSFCAG00000006297PRPF810099.914Felis_catus
ENSMUSG00000020850Prpf810099.400ENSFALG00000006628PRPF810099.400Ficedula_albicollis
ENSMUSG00000020850Prpf810099.914ENSFDAG00000004711PRPF810099.914Fukomys_damarensis
ENSMUSG00000020850Prpf810097.395ENSFHEG00000021084prpf810097.395Fundulus_heteroclitus
ENSMUSG00000020850Prpf810095.347ENSGMOG00000002028prpf89995.347Gadus_morhua
ENSMUSG00000020850Prpf810099.358ENSGALG00000002943PRPF810099.358Gallus_gallus
ENSMUSG00000020850Prpf89997.478ENSGAFG00000010337prpf89997.478Gambusia_affinis
ENSMUSG00000020850Prpf810097.473ENSGACG00000008504prpf810097.473Gasterosteus_aculeatus
ENSMUSG00000020850Prpf810099.443ENSGAGG00000008350PRPF810099.443Gopherus_agassizii
ENSMUSG00000020850Prpf810099.914ENSGGOG00000005516PRPF810099.914Gorilla_gorilla
ENSMUSG00000020850Prpf810097.561ENSHBUG00000016192prpf810097.561Haplochromis_burtoni
ENSMUSG00000020850Prpf810099.914ENSHGLG00000012029PRPF810099.914Heterocephalus_glaber_female
ENSMUSG00000020850Prpf810099.914ENSHGLG00100016494PRPF810099.914Heterocephalus_glaber_male
ENSMUSG00000020850Prpf810097.520ENSHCOG00000016414prpf810097.520Hippocampus_comes
ENSMUSG00000020850Prpf810097.562ENSIPUG00000023230prpf810097.562Ictalurus_punctatus
ENSMUSG00000020850Prpf810099.914ENSSTOG00000005128PRPF810099.914Ictidomys_tridecemlineatus
ENSMUSG00000020850Prpf810097.816ENSJJAG00000021159Prpf810097.816Jaculus_jaculus
ENSMUSG00000020850Prpf89997.934ENSKMAG00000016118prpf89997.934Kryptolebias_marmoratus
ENSMUSG00000020850Prpf810097.435ENSLBEG00000026903prpf810097.435Labrus_bergylta
ENSMUSG00000020850Prpf810091.985ENSLACG00000010479PRPF89998.502Latimeria_chalumnae
ENSMUSG00000020850Prpf89997.688ENSLOCG00000005409prpf89997.688Lepisosteus_oculatus
ENSMUSG00000020850Prpf810099.914ENSLAFG00000015445PRPF810099.914Loxodonta_africana
ENSMUSG00000020850Prpf810099.914ENSMFAG00000039995PRPF810099.914Macaca_fascicularis
ENSMUSG00000020850Prpf810099.914ENSMMUG00000004820PRPF810099.914Macaca_mulatta
ENSMUSG00000020850Prpf810099.914ENSMNEG00000035713PRPF810099.914Macaca_nemestrina
ENSMUSG00000020850Prpf810099.914ENSMLEG00000037937PRPF810099.914Mandrillus_leucophaeus
ENSMUSG00000020850Prpf810097.733ENSMAMG00000008919prpf810097.733Mastacembelus_armatus
ENSMUSG00000020850Prpf810097.404ENSMZEG00005015073prpf810097.404Maylandia_zebra
ENSMUSG00000020850Prpf810099.358ENSMGAG00000004769PRPF810099.358Meleagris_gallopavo
ENSMUSG00000020850Prpf810099.957ENSMICG00000010320PRPF810099.957Microcebus_murinus
ENSMUSG00000020850Prpf810099.957ENSMOCG00000016838Prpf810099.957Microtus_ochrogaster
ENSMUSG00000020850Prpf810097.263ENSMMOG00000011887prpf810097.263Mola_mola
ENSMUSG00000020850Prpf810099.743ENSMODG00000010480PRPF810099.743Monodelphis_domestica
ENSMUSG00000020850Prpf89797.621ENSMALG00000003558prpf810097.621Monopterus_albus
ENSMUSG00000020850Prpf8100100.000MGP_CAROLIEiJ_G0016740Prpf8100100.000Mus_caroli
ENSMUSG00000020850Prpf810099.914MGP_PahariEiJ_G0017877Prpf810099.914Mus_pahari
ENSMUSG00000020850Prpf8100100.000MGP_SPRETEiJ_G0017583Prpf8100100.000Mus_spretus
ENSMUSG00000020850Prpf810099.914ENSMPUG00000013227PRPF810099.914Mustela_putorius_furo
ENSMUSG00000020850Prpf810099.743ENSMLUG00000002666PRPF810099.743Myotis_lucifugus
ENSMUSG00000020850Prpf810098.201ENSNGAG00000005305Prpf810098.201Nannospalax_galili
ENSMUSG00000020850Prpf810097.447ENSNBRG00000013127prpf810097.447Neolamprologus_brichardi
ENSMUSG00000020850Prpf89797.570ENSNLEG00000000897PRPF89897.570Nomascus_leucogenys
ENSMUSG00000020850Prpf89997.957ENSMEUG00000015999PRPF810097.957Notamacropus_eugenii
ENSMUSG00000020850Prpf810098.458ENSOPRG00000003102PRPF810098.458Ochotona_princeps
ENSMUSG00000020850Prpf810099.914ENSODEG00000008468PRPF810099.914Octodon_degus
ENSMUSG00000020850Prpf810097.448ENSONIG00000008153prpf810097.448Oreochromis_niloticus
ENSMUSG00000020850Prpf88299.645ENSOANG00000004250PRPF89799.645Ornithorhynchus_anatinus
ENSMUSG00000020850Prpf810099.914ENSOCUG00000000081PRPF810099.914Oryctolagus_cuniculus
ENSMUSG00000020850Prpf89997.645ENSORLG00000008036prpf89997.645Oryzias_latipes
ENSMUSG00000020850Prpf89997.603ENSORLG00020021070prpf89997.603Oryzias_latipes_hni
ENSMUSG00000020850Prpf89997.645ENSORLG00015002340prpf89997.645Oryzias_latipes_hsok
ENSMUSG00000020850Prpf89996.144ENSOMEG00000016866prpf89996.144Oryzias_melastigma
ENSMUSG00000020850Prpf810099.786ENSOARG00000013312PRPF810099.786Ovis_aries
ENSMUSG00000020850Prpf810099.914ENSPPAG00000042753PRPF810099.914Pan_paniscus
ENSMUSG00000020850Prpf810099.914ENSPPRG00000008746PRPF810099.914Panthera_pardus
ENSMUSG00000020850Prpf810099.829ENSPTIG00000019200PRPF810099.829Panthera_tigris_altaica
ENSMUSG00000020850Prpf810099.914ENSPTRG00000039576PRPF810099.914Pan_troglodytes
ENSMUSG00000020850Prpf89998.971ENSPANG00000024607PRPF89998.971Papio_anubis
ENSMUSG00000020850Prpf810097.277ENSPKIG00000011201prpf810097.277Paramormyrops_kingsleyae
ENSMUSG00000020850Prpf810099.400ENSPSIG00000013393PRPF810099.400Pelodiscus_sinensis
ENSMUSG00000020850Prpf810099.957ENSPEMG00000021699Prpf810099.957Peromyscus_maniculatus_bairdii
ENSMUSG00000020850Prpf89693.898ENSPMAG00000005438prpf810093.942Petromyzon_marinus
ENSMUSG00000020850Prpf810099.743ENSPCIG00000022603PRPF810099.777Phascolarctos_cinereus
ENSMUSG00000020850Prpf810096.948ENSPFOG00000007005prpf810096.948Poecilia_formosa
ENSMUSG00000020850Prpf810096.360ENSPLAG00000020777prpf810096.360Poecilia_latipinna
ENSMUSG00000020850Prpf810096.948ENSPMEG00000004051prpf810096.948Poecilia_mexicana
ENSMUSG00000020850Prpf810097.602ENSPREG00000021902prpf810097.602Poecilia_reticulata
ENSMUSG00000020850Prpf810099.914ENSPPYG00000007777PRPF810099.914Pongo_abelii
ENSMUSG00000020850Prpf89099.647ENSPCAG00000008938PRPF89099.647Procavia_capensis
ENSMUSG00000020850Prpf810099.957ENSPCOG00000015182PRPF810099.957Propithecus_coquereli
ENSMUSG00000020850Prpf893100.000ENSPVAG00000002134PRPF893100.000Pteropus_vampyrus
ENSMUSG00000020850Prpf810097.561ENSPNYG00000016356prpf810097.561Pundamilia_nyererei
ENSMUSG00000020850Prpf810097.605ENSPNAG00000009247prpf810097.605Pygocentrus_nattereri
ENSMUSG00000020850Prpf8100100.000ENSRNOG00000003495Prpf8100100.000Rattus_norvegicus
ENSMUSG00000020850Prpf810099.914ENSRBIG00000031219PRPF810099.914Rhinopithecus_bieti
ENSMUSG00000020850Prpf810099.914ENSRROG00000038014PRPF810099.914Rhinopithecus_roxellana
ENSMUSG00000020850Prpf89962.430YHR165CPRP89562.484Saccharomyces_cerevisiae
ENSMUSG00000020850Prpf810099.914ENSSBOG00000029717PRPF810099.914Saimiri_boliviensis_boliviensis
ENSMUSG00000020850Prpf810099.700ENSSHAG00000006167PRPF810099.700Sarcophilus_harrisii
ENSMUSG00000020850Prpf810097.481ENSSFOG00015013905prpf810097.481Scleropages_formosus
ENSMUSG00000020850Prpf810097.352ENSSMAG00000017736prpf810097.352Scophthalmus_maximus
ENSMUSG00000020850Prpf810097.733ENSSDUG00000003029prpf810097.733Seriola_dumerili
ENSMUSG00000020850Prpf86898.874ENSSLDG00000017096prpf810098.874Seriola_lalandi_dorsalis
ENSMUSG00000020850Prpf88799.395ENSSARG00000002892PRPF88799.395Sorex_araneus
ENSMUSG00000020850Prpf810099.229ENSSPUG00000007463PRPF810099.229Sphenodon_punctatus
ENSMUSG00000020850Prpf810097.178ENSSPAG00000015639prpf810097.178Stegastes_partitus
ENSMUSG00000020850Prpf810099.914ENSSSCG00000017817PRPF810099.914Sus_scrofa
ENSMUSG00000020850Prpf87498.601ENSTGUG00000015597-9599.651Taeniopygia_guttata
ENSMUSG00000020850Prpf810099.400ENSTGUG00000005648-10099.400Taeniopygia_guttata
ENSMUSG00000020850Prpf810097.520ENSTRUG00000015906prpf810097.520Takifugu_rubripes
ENSMUSG00000020850Prpf89598.686ENSTNIG00000003460prpf89998.686Tetraodon_nigroviridis
ENSMUSG00000020850Prpf89399.932ENSTBEG00000006431PRPF89399.932Tupaia_belangeri
ENSMUSG00000020850Prpf810099.315ENSTTRG00000006869PRPF810099.315Tursiops_truncatus
ENSMUSG00000020850Prpf810094.904ENSUAMG00000015644-9699.921Ursus_americanus
ENSMUSG00000020850Prpf810099.657ENSUMAG00000009385PRPF810099.657Ursus_maritimus
ENSMUSG00000020850Prpf87199.310ENSVPAG00000006063-7199.310Vicugna_pacos
ENSMUSG00000020850Prpf810099.914ENSVVUG00000021695PRPF89999.914Vulpes_vulpes
ENSMUSG00000020850Prpf810098.801ENSXETG00000022259prpf810098.801Xenopus_tropicalis
ENSMUSG00000020850Prpf810097.523ENSXCOG00000012775prpf810097.523Xiphophorus_couchianus
ENSMUSG00000020850Prpf810097.481ENSXMAG00000008505prpf810097.481Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000244spliceosomal tri-snRNP complex assembly21873635.IBAProcess
GO:0000244spliceosomal tri-snRNP complex assembly-ISOProcess
GO:0000386second spliceosomal transesterification activity21873635.IBAFunction
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005682U5 snRNP21873635.IBAComponent
GO:0005682U5 snRNP-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0017070U6 snRNA binding21873635.IBAFunction
GO:0030532small nuclear ribonucleoprotein complex-ISOComponent
GO:0030619U1 snRNA binding21873635.IBAFunction
GO:0030620U2 snRNA binding21873635.IBAFunction
GO:0030623U5 snRNA binding21873635.IBAFunction
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0070530K63-linked polyubiquitin modification-dependent protein binding-ISOFunction
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071222cellular response to lipopolysaccharide-ISOProcess
GO:0071356cellular response to tumor necrosis factor-ISOProcess
GO:0097157pre-mRNA intronic binding21873635.IBAFunction

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