EuRBPDB

Note: to get the extension of tumor abbreviations.

Cancer Related Information
Basic Information

Differential Expression

Expression in 33 cancers

Mutations

Cancer	Chr	Position	Mutation Type	dbSNP	Protein-change	Allele Freq	RBD
ACC	chr8	144262665	In_Frame_Del	novel	N634del	0.2
ACC	chr8	144264930	Missense_Mutation	novel	D178N	0.61	BOP1NT
ACC	chr8	144289297	Frame_Shift_Ins	rs782133829	*L36Pfs34**	0.28
BLCA	chr8	144289178	Missense_Mutation	rs782512248	E76K	0.47	BOP1NT
BLCA	chr8	144264526	Missense_Mutation	novel	E252K	0.27
BLCA	chr8	144289172	Missense_Mutation	rs376129693	D78N	0.15	BOP1NT
BLCA	chr8	144289278	Silent	novel	L42L	0.33
BLCA	chr8	144262419	Silent	novel	I688I	0.14
BLCA	chr8	144263504	Silent	novel	P466P	0.25
BLCA	chr8	144262227	Missense_Mutation	novel	F726L	0.13
BLCA	chr8	144289246	Missense_Mutation	novel	S53C	0.62
BLCA	chr8	144264599	Silent	novel	F227F	0.4
BLCA	chr8	144264607	Missense_Mutation	novel	D225N	0.44
BLCA	chr8	144263867	Silent	novel	P395P	0.32
BRCA	chr8	144264520	Missense_Mutation	novel	E254K	0.06
BRCA	chr8	144263538	Frame_Shift_Del	novel	*G455Afs3**	0.44
BRCA	chr8	144264255	Silent	novel	P316P	0.31
BRCA	chr8	144265016	Frame_Shift_Ins	novel	*H149Pfs20**	0.64	BOP1NT
CESC	chr8	144263014	Missense_Mutation	novel	S578I	0.14
CESC	chr8	144263503	Missense_Mutation	novel	A467T	0.14
CESC	chr8	144264041	Silent	novel	I360I	0.19
CESC	chr8	144264392	Missense_Mutation	novel	R271C	0.14
CESC	chr8	144264989	Missense_Mutation	novel	R158H	0.63	BOP1NT
CESC	chr8	144262253	Missense_Mutation	novel	D718N	0.36
COAD	chr8	144264930	Missense_Mutation	novel	D178N	0.12	BOP1NT
COAD	chr8	144289298	Frame_Shift_Del	rs782769521	*L36Sfs154**	0.41
COAD	chr8	144263600	Silent	novel	D434D	0.95
COAD	chr8	144289250	Missense_Mutation	rs782267874	V52I	0.27
COAD	chr8	144263709	Missense_Mutation	novel	G425D	0.43
COAD	chr8	144264354	Silent	novel	L283L	0.41
COAD	chr8	144262177	Missense_Mutation	novel	R743H	0.09
COAD	chr8	144264761	Missense_Mutation	novel	R206W	0.39	BOP1NT
COAD	chr8	144262235	Missense_Mutation	novel	V724I	0.17
COAD	chr8	144289294	Missense_Mutation	novel	L37H	0.25
ESCA	chr8	144264332	Missense_Mutation	novel	A291T	0.34
ESCA	chr8	144263528	Missense_Mutation	novel	K458N	0.12
GBM	chr8	144262444	Nonsense_Mutation	novel	S680*	0.75
GBM	chr8	144264087	Missense_Mutation	novel	R345H	0.44
GBM	chr8	144276246	Missense_Mutation	novel	A123V	0.51	BOP1NT
HNSC	chr8	144264754	Missense_Mutation	novel	Q208L	0.31	BOP1NT
HNSC	chr8	144276265	Missense_Mutation	novel	R117W	0.43	BOP1NT
HNSC	chr8	144263585	Silent	novel	L439L	0.29
HNSC	chr8	144276227	Silent	novel	E129E	0.2
HNSC	chr8	144262625	Missense_Mutation	novel	D648N	0.07
HNSC	chr8	144264589	Missense_Mutation	novel	V231I	0.18
HNSC	chr8	144276234	Missense_Mutation	novel	S127F	0.13	BOP1NT
KIRC	chr8	144262503	Missense_Mutation	novel	R660S	0.21
KIRP	chr8	144264930	Missense_Mutation	novel	D178Y	0.19	BOP1NT
KIRP	chr8	144262221	Silent	novel	P728P	0.29
LGG	chr8	144264972	Missense_Mutation	novel	R164G	0.14	BOP1NT
LGG	chr8	144263488	Missense_Mutation	novel	A472T	0.36
LIHC	chr8	144263598	Missense_Mutation	novel	G435A	0.44
LIHC	chr8	144263734	Missense_Mutation	novel	R417W	0.24
LUAD	chr8	144264053	Silent	novel	Y356Y	0.07
LUAD	chr8	144289187	Missense_Mutation	novel	D73Y	0.4
LUAD	chr8	144289260	Missense_Mutation	novel	S48R	0.25
LUSC	chr8	144263285	Missense_Mutation	novel	R514H	0.23
LUSC	chr8	144264376	Missense_Mutation	novel	P276H	0.48
LUSC	chr8	144289211	Missense_Mutation	novel	D65Y	0.14
LUSC	chr8	144264421	Missense_Mutation	novel	H261R	0.39
LUSC	chr8	144265039	Silent	novel	L141L	0.24
LUSC	chr8	144264999	Missense_Mutation	novel	D155Y	0.05	BOP1NT
LUSC	chr8	144263911	Missense_Mutation	novel	V381L	0.68
LUSC	chr8	144263243	Missense_Mutation	novel	R528Q	0.35
LUSC	chr8	144264315	Silent	novel	H296H	0.32
LUSC	chr8	144262588	Missense_Mutation	novel	R660K	0.6
OV	chr8	144289135	Missense_Mutation	novel	G90V	0.05	BOP1NT
OV	chr8	144289096	Missense_Mutation	novel	Q103L	0.11	BOP1NT
OV	chr8	144289183	Missense_Mutation	novel	D74G	0.04	BOP1NT
PAAD	chr8	144262250	Silent	novel	L719L	0.19
PAAD	chr8	144289195	Missense_Mutation	novel	S70N	0.15
PRAD	chr8	144262666	Missense_Mutation	novel	N634T	0.05
PRAD	chr8	144262187	Missense_Mutation	novel	G740R	0.24
READ	chr8	144264320	Missense_Mutation	novel	R295C	0.33
SKCM	chr8	144289246	Missense_Mutation	novel	S53F	0.43
SKCM	chr8	144289169	Missense_Mutation	novel	E79K	0.2	BOP1NT
SKCM	chr8	144264425	Missense_Mutation	novel	V260M	0.3
SKCM	chr8	144264426	Missense_Mutation	novel	M259I	0.3
SKCM	chr8	144276295	Missense_Mutation	novel	P107S	0.19	BOP1NT
SKCM	chr8	144264044	Silent	novel	F359F	0.41
SKCM	chr8	144289296	Silent	novel	L36L	0.31
SKCM	chr8	144263531	Silent	novel	V457V	0.32
SKCM	chr8	144264403	Nonsense_Mutation	novel	W267*	0.57
SKCM	chr8	144264599	Silent	novel	F227F	0.34
SKCM	chr8	144262142	3'UTR	novel		0.17
SKCM	chr8	144262196	Missense_Mutation	novel	G737R	0.39
SKCM	chr8	144276278	Silent	novel	E112E	0.28
SKCM	chr8	144262256	Nonsense_Mutation	novel	R717*	0.33
SKCM	chr8	144262257	Silent	novel	T716T	0.35
SKCM	chr8	144262494	Silent	novel	K663K	0.17
SKCM	chr8	144262203	Silent	novel	F734F	0.58
STAD	chr8	144264264	Silent	novel	S313S	0.26
STAD	chr8	144265022	Missense_Mutation	novel	F147S	0.2	BOP1NT
STAD	chr8	144265029	Missense_Mutation	novel	D145N	0.09	BOP1NT
STAD	chr8	144264590	Silent	novel	D230D	0.19
STAD	chr8	144265038	Nonsense_Mutation	novel	E142*	0.1	BOP1NT
STAD	chr8	144289140	Silent	rs199980866	D88D	0.19
STAD	chr8	144264025	Missense_Mutation	novel	R366C	0.26
STAD	chr8	144289179	Silent	rs138704768	D75D	0.44
STAD	chr8	144264528	Missense_Mutation	novel	V251A	0.18
STAD	chr8	144289298	Frame_Shift_Del	rs782769521	*L36Sfs154**	0.14
STAD	chr8	144263299	Frame_Shift_Del	novel	*L510Cfs28**	0.26
STAD	chr8	144263537	Frame_Shift_Ins	novel	*V456Rfs51**	0.25
STAD	chr8	144289265	Missense_Mutation	rs549552930	G47S	0.24
UCEC	chr8	144276288	Missense_Mutation	novel	P109L	0.37	BOP1NT
UCEC	chr8	144289155	Silent	rs782561076	D83D	0.42
UCEC	chr8	144264230	Nonsense_Mutation	novel	E325*	0.3
UCEC	chr8	144264972	Missense_Mutation	novel	R164W	0.26	BOP1NT
UCEC	chr8	144264045	Missense_Mutation	novel	F359S	0.41
UCEC	chr8	144276265	Missense_Mutation	novel	R117W	0.21	BOP1NT
UCEC	chr8	144264391	Missense_Mutation	novel	R271H	0.13
UCEC	chr8	144264382	Missense_Mutation	novel	R274Q	0.45
UCEC	chr8	144262437	Silent	novel	S682S	0.24
UCEC	chr8	144264730	Missense_Mutation	novel	G216D	0.5	BOP1NT
UCEC	chr8	144289140	Silent	rs199980866	D88D	0.25
UCEC	chr8	144262241	Missense_Mutation	novel	L722M	0.43
UCEC	chr8	144264326	Missense_Mutation	novel	L293F	0.28
UCEC	chr8	144264978	Missense_Mutation	novel	P162S	0.37	BOP1NT
UCEC	chr8	144264087	Missense_Mutation	novel	R345H	0.18
UCEC	chr8	144264804	Silent	novel	G191G	0.52
UCEC	chr8	144289297	Frame_Shift_Ins	rs782133829	*L36Pfs34**	0.32
UCEC	chr8	144264324	Silent	novel	L293L	0.45
UCEC	chr8	144263833	Splice_Region	novel	L407L	0.05
UCEC	chr8	144276269	Silent	novel	S115S	0.58
UCEC	chr8	144289205	Missense_Mutation	rs148894796	G67S	0.51
UCEC	chr8	144289239	Silent	rs782562547	S55S	0.55
UCEC	chr8	144264761	Missense_Mutation	novel	R206W	0.41	BOP1NT
UCEC	chr8	144263070	Silent	novel	T559T	0.27
UCEC	chr8	144264250	Missense_Mutation	novel	P318H	0.35
UCEC	chr8	144289197	Silent	rs782349279	D69D	0.36
UCEC	chr8	144276274	Missense_Mutation	novel	A114T	0.4	BOP1NT
UCEC	chr8	144289117	Missense_Mutation	novel	K96T	0.44	BOP1NT
UCEC	chr8	144262187	Missense_Mutation	novel	G740R	0.1
UCEC	chr8	144263133	Silent	novel	T538T	0.36
UCEC	chr8	144264607	Missense_Mutation	novel	D225N	0.34
UCS	chr8	144263893	Missense_Mutation	novel	D387N	0.24

Copy Number Variations (CNVs)

Cancer	Type	Freq	Q-value
DLBC	AMP	0.25	0.018626
KIRC	AMP	0.1174	0.15559
LGG	DEL	0.0487	0.014004
SARC	AMP	0.249	0.18425
SKCM	AMP	0.4469	2.8957e-05
TGCT	AMP	0.56	0.13696
UVM	AMP	0.7375	8.8879e-13

Survival Analysis

Cancer	P-value	Q-value
STAD	0.05	Kaplan-Meier Survival Analysis
SARC	0.00066	Kaplan-Meier Survival Analysis
MESO	0.0011	Kaplan-Meier Survival Analysis
ACC	0.00045	Kaplan-Meier Survival Analysis
HNSC	0.031	Kaplan-Meier Survival Analysis
SKCM	0.012	Kaplan-Meier Survival Analysis
ESCA	0.036	Kaplan-Meier Survival Analysis
KIRP	0.00015	Kaplan-Meier Survival Analysis
BLCA	0.03	Kaplan-Meier Survival Analysis
CESC	0.044	Kaplan-Meier Survival Analysis
LAML	0.025	Kaplan-Meier Survival Analysis
UCEC	0.033	Kaplan-Meier Survival Analysis
LIHC	0.00024	Kaplan-Meier Survival Analysis
LGG	0.0001	Kaplan-Meier Survival Analysis
THCA	0.047	Kaplan-Meier Survival Analysis
LUAD	0.0081	Kaplan-Meier Survival Analysis

Drugs

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Transcripts

Gene Model

GWAS

PPI

Ortholog

Gene Ontology

Description

Ensembl ID: ENSG00000261236 (Gene tree)
Gene ID: 23246
Gene Symbol: BOP1
Alias: KIAA0124
Full Name: BOP1 ribosomal biogenesis factor
Gene Type: protein_coding
Specie: Homo_sapiens
Strand: Minus strand
Length: 29,393 bases
Position: chr8:144,262,046-144,291,438
Accession: 15519
Summary: (BOP1 Ribosomal Biogenesis Factor) is a Protein Coding gene. Among its related pathways are Gene Expression and rRNA processing in the nucleus and cytosol. Gene Ontology (GO) annotations related to this gene include ribonucleoprotein complex binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000455106	BOP1NT	PF08145.12	1.7e-108	1	1
ENSP00000456082	BOP1NT	PF08145.12	1.7e-49	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	NascentRICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	PolyT & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	polyT & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000569160	BOP1-203	734	-	-	- (aa)	-	-
ENST00000563210	BOP1-201	642	-	-	- (aa)	-	-
ENST00000569712	BOP1-206	556	-	-	- (aa)	-	-
ENST00000569669	BOP1-205	2303	-	ENSP00000455106	746 (aa)	-	Q14137
ENST00000569403	BOP1-204	651	-	ENSP00000456082	217 (aa)	-	A0A075B729
ENST00000568812	BOP1-202	878	-	-	- (aa)	-	-

Gene Model

Click here to download 's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000261236	rs7838717	8	144280310	T	Dupuytren's disease	28886342	[1.131-1.234]	1.182	EFO_0004229
ENSG00000261236	rs7838717	8	144280310	?	Lung function (FVC)	30595370			EFO_0004312
ENSG00000261236	rs7838717	8	144280310	T	Lung function (FVC)	30804560	[0.018-0.028] unit decrease	0.0234	EFO_0004312
ENSG00000261236	rs7838717	8	144280310	T	FEV1	30804560	[0.017-0.027] unit decrease	0.0217	EFO_0004314

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000261236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy	Species
ENSG00000261236	BOP1	92	66.234	ENSAPOG00000019208	bop1	99	65.512	Acanthochromis_polyacanthus
ENSG00000261236	BOP1	89	85.865	ENSAMEG00000005886	BOP1	99	84.203	Ailuropoda_melanoleuca
ENSG00000261236	BOP1	93	64.937	ENSACIG00000007313	bop1	99	65.254	Amphilophus_citrinellus
ENSG00000261236	BOP1	87	67.896	ENSAOCG00000016222	bop1	94	66.239	Amphiprion_ocellaris
ENSG00000261236	BOP1	87	67.742	ENSAPEG00000018843	bop1	94	66.051	Amphiprion_percula
ENSG00000261236	BOP1	85	69.436	ENSATEG00000010331	bop1	99	63.314	Anabas_testudineus
ENSG00000261236	BOP1	73	76.250	ENSAPLG00000008324	BOP1	100	67.882	Anas_platyrhynchos
ENSG00000261236	BOP1	100	93.029	ENSANAG00000035474	BOP1	100	93.029	Aotus_nancymaae
ENSG00000261236	BOP1	85	68.701	ENSACLG00000005923	bop1	99	68.701	Astatotilapia_calliptera
ENSG00000261236	BOP1	76	70.899	ENSAMXG00000011549	bop1	87	70.899	Astyanax_mexicanus
ENSG00000261236	BOP1	96	86.592	ENSBTAG00000009811	BOP1	93	87.147	Bos_taurus
ENSG00000261236	BOP1	78	53.254	WBGene00012978	Y48B6A.1	93	47.013	Caenorhabditis_elegans
ENSG00000261236	BOP1	93	90.961	ENSCJAG00000021437	BOP1	89	90.961	Callithrix_jacchus
ENSG00000261236	BOP1	98	81.532	ENSCAFG00000001554	BOP1	99	80.805	Canis_familiaris
ENSG00000261236	BOP1	94	82.336	ENSCHIG00000013489	BOP1	94	82.194	Capra_hircus
ENSG00000261236	BOP1	100	88.740	ENSTSYG00000035588	BOP1	100	88.874	Carlito_syrichta
ENSG00000261236	BOP1	83	91.734	ENSCAPG00000005636	BOP1	96	91.572	Cavia_aperea
ENSG00000261236	BOP1	98	85.402	ENSCPOG00000005456	BOP1	94	87.948	Cavia_porcellus
ENSG00000261236	BOP1	100	92.761	ENSCCAG00000028318	BOP1	100	92.761	Cebus_capucinus
ENSG00000261236	BOP1	100	97.587	ENSCATG00000032450	BOP1	100	97.587	Cercocebus_atys
ENSG00000261236	BOP1	100	85.121	ENSCLAG00000010297	BOP1	94	88.379	Chinchilla_lanigera
ENSG00000261236	BOP1	100	97.453	ENSCSAG00000008653	BOP1	100	97.453	Chlorocebus_sabaeus
ENSG00000261236	BOP1	95	73.538	ENSCPBG00000018884	BOP1	98	72.414	Chrysemys_picta_bellii
ENSG00000261236	BOP1	93	51.973	ENSCING00000006069	-	91	55.357	Ciona_intestinalis
ENSG00000261236	BOP1	83	59.746	ENSCSAVG00000006653	-	99	59.746	Ciona_savignyi
ENSG00000261236	BOP1	97	95.417	ENSCANG00000038730	BOP1	96	96.333	Colobus_angolensis_palliatus
ENSG00000261236	BOP1	99	84.812	ENSCGRG00001022601	BOP1	95	87.411	Cricetulus_griseus_chok1gshd
ENSG00000261236	BOP1	99	84.677	ENSCGRG00000012159	Bop1	95	87.268	Cricetulus_griseus_crigri
ENSG00000261236	BOP1	94	65.385	ENSCSEG00000018121	bop1	97	64.245	Cynoglossus_semilaevis
ENSG00000261236	BOP1	84	70.411	ENSCVAG00000023063	bop1	94	65.698	Cyprinodon_variegatus
ENSG00000261236	BOP1	84	74.045	ENSDARG00000063627	bop1	80	74.045	Danio_rerio
ENSG00000261236	BOP1	96	84.807	ENSDNOG00000047347	BOP1	99	82.731	Dasypus_novemcinctus
ENSG00000261236	BOP1	99	84.605	ENSDORG00000004860	Bop1	100	86.819	Dipodomys_ordii
ENSG00000261236	BOP1	84	53.678	FBgn0028744	CG5033	81	53.678	Drosophila_melanogaster
ENSG00000261236	BOP1	84	67.195	ENSEBUG00000003348	bop1	98	67.195	Eptatretus_burgeri
ENSG00000261236	BOP1	100	87.550	ENSEASG00005010217	BOP1	100	86.479	Equus_asinus_asinus
ENSG00000261236	BOP1	100	87.416	ENSECAG00000016440	BOP1	90	86.345	Equus_caballus
ENSG00000261236	BOP1	85	86.957	ENSEEUG00000005437	BOP1	100	88.258	Erinaceus_europaeus
ENSG00000261236	BOP1	84	71.542	ENSELUG00000022099	bop1	80	71.542	Esox_lucius
ENSG00000261236	BOP1	95	87.482	ENSFCAG00000022942	BOP1	100	85.925	Felis_catus
ENSG00000261236	BOP1	76	69.204	ENSFALG00000000360	BOP1	100	69.204	Ficedula_albicollis
ENSG00000261236	BOP1	89	89.339	ENSFDAG00000015755	BOP1	99	88.252	Fukomys_damarensis
ENSG00000261236	BOP1	71	70.189	ENSFHEG00000017233	bop1	88	70.566	Fundulus_heteroclitus
ENSG00000261236	BOP1	83	66.343	ENSGMOG00000000569	bop1	100	66.343	Gadus_morhua
ENSG00000261236	BOP1	94	71.591	ENSGALG00000053353	BOP1	99	71.875	Gallus_gallus
ENSG00000261236	BOP1	94	66.246	ENSGAFG00000011248	bop1	94	67.092	Gambusia_affinis
ENSG00000261236	BOP1	93	65.665	ENSGACG00000010420	bop1	97	67.428	Gasterosteus_aculeatus
ENSG00000261236	BOP1	95	73.574	ENSGAGG00000012770	BOP1	98	72.740	Gopherus_agassizii
ENSG00000261236	BOP1	96	99.579	ENSGGOG00000013590	BOP1	100	99.579	Gorilla_gorilla
ENSG00000261236	BOP1	85	69.171	ENSHBUG00000013186	bop1	95	65.954	Haplochromis_burtoni
ENSG00000261236	BOP1	99	84.812	ENSHGLG00000017934	BOP1	95	88.352	Heterocephalus_glaber_female
ENSG00000261236	BOP1	97	86.704	ENSHGLG00100007897	BOP1	99	86.506	Heterocephalus_glaber_male
ENSG00000261236	BOP1	94	64.979	ENSHCOG00000018713	bop1	93	65.335	Hippocampus_comes
ENSG00000261236	BOP1	99	63.415	ENSIPUG00000012277	bop1	96	66.443	Ictalurus_punctatus
ENSG00000261236	BOP1	96	87.938	ENSSTOG00000020925	BOP1	100	84.913	Ictidomys_tridecemlineatus
ENSG00000261236	BOP1	99	84.615	ENSJJAG00000003954	Bop1	99	86.771	Jaculus_jaculus
ENSG00000261236	BOP1	84	69.937	ENSKMAG00000001743	bop1	99	65.576	Kryptolebias_marmoratus
ENSG00000261236	BOP1	84	69.984	ENSLBEG00000022444	bop1	92	67.188	Labrus_bergylta
ENSG00000261236	BOP1	95	65.551	ENSLBEG00000023751	-	93	66.106	Labrus_bergylta
ENSG00000261236	BOP1	85	72.642	ENSLACG00000013738	BOP1	97	66.033	Latimeria_chalumnae
ENSG00000261236	BOP1	83	73.052	ENSLOCG00000007429	bop1	100	73.052	Lepisosteus_oculatus
ENSG00000261236	BOP1	94	83.167	ENSLAFG00000000686	BOP1	100	82.882	Loxodonta_africana
ENSG00000261236	BOP1	97	97.368	ENSMFAG00000031321	BOP1	100	97.368	Macaca_fascicularis
ENSG00000261236	BOP1	100	96.515	ENSMMUG00000014724	BOP1	100	96.515	Macaca_mulatta
ENSG00000261236	BOP1	100	82.933	ENSMNEG00000040269	BOP1	100	82.800	Macaca_nemestrina
ENSG00000261236	BOP1	96	97.475	ENSMLEG00000039202	BOP1	100	97.475	Mandrillus_leucophaeus
ENSG00000261236	BOP1	100	62.533	ENSMAMG00000022191	bop1	96	62.745	Mastacembelus_armatus
ENSG00000261236	BOP1	92	66.040	ENSMZEG00005011990	bop1	95	65.385	Maylandia_zebra
ENSG00000261236	BOP1	80	73.988	ENSMGAG00000014192	-	100	78.231	Meleagris_gallopavo
ENSG00000261236	BOP1	96	80.919	ENSMAUG00000012534	Bop1	98	83.741	Mesocricetus_auratus
ENSG00000261236	BOP1	100	85.121	ENSMICG00000015653	BOP1	100	84.987	Microcebus_murinus
ENSG00000261236	BOP1	100	84.718	ENSMOCG00000011668	Bop1	96	87.179	Microtus_ochrogaster
ENSG00000261236	BOP1	94	61.442	ENSMMOG00000017547	bop1	100	63.031	Mola_mola
ENSG00000261236	BOP1	99	76.841	ENSMODG00000010589	BOP1	92	76.781	Monodelphis_domestica
ENSG00000261236	BOP1	94	63.738	ENSMALG00000011552	bop1	93	64.435	Monopterus_albus
ENSG00000261236	BOP1	100	82.842	MGP_CAROLIEiJ_G0019928	Bop1	95	86.533	Mus_caroli
ENSG00000261236	BOP1	100	82.574	ENSMUSG00000022557	Bop1	95	86.246	Mus_musculus
ENSG00000261236	BOP1	100	82.842	MGP_PahariEiJ_G0019938	Bop1	95	86.533	Mus_pahari
ENSG00000261236	BOP1	100	82.574	MGP_SPRETEiJ_G0020831	Bop1	97	91.447	Mus_spretus
ENSG00000261236	BOP1	96	88.547	ENSMPUG00000006831	BOP1	96	88.952	Mustela_putorius_furo
ENSG00000261236	BOP1	96	88.966	ENSMLUG00000030120	BOP1	98	89.886	Myotis_lucifugus
ENSG00000261236	BOP1	83	90.924	ENSNGAG00000009053	Bop1	98	90.924	Nannospalax_galili
ENSG00000261236	BOP1	93	60.530	ENSNBRG00000021004	bop1	99	61.582	Neolamprologus_brichardi
ENSG00000261236	BOP1	83	85.065	ENSMEUG00000000450	BOP1	82	85.065	Notamacropus_eugenii
ENSG00000261236	BOP1	100	84.605	ENSODEG00000013361	BOP1	100	84.492	Octodon_degus
ENSG00000261236	BOP1	84	69.634	ENSONIG00000015336	bop1	95	66.097	Oreochromis_niloticus
ENSG00000261236	BOP1	85	70.000	ENSORLG00000001674	bop1	94	66.525	Oryzias_latipes
ENSG00000261236	BOP1	85	69.688	ENSORLG00020010315	bop1	94	66.383	Oryzias_latipes_hni
ENSG00000261236	BOP1	90	67.311	ENSORLG00015017381	bop1	94	66.525	Oryzias_latipes_hsok
ENSG00000261236	BOP1	85	69.375	ENSOMEG00000009341	bop1	99	64.151	Oryzias_melastigma
ENSG00000261236	BOP1	95	86.901	ENSOGAG00000017175	BOP1	100	84.246	Otolemur_garnettii
ENSG00000261236	BOP1	71	88.312	ENSOARG00000014255	BOP1	89	76.636	Ovis_aries
ENSG00000261236	BOP1	96	98.878	ENSPPAG00000043028	BOP1	100	98.878	Pan_paniscus
ENSG00000261236	BOP1	88	88.214	ENSPPRG00000008442	BOP1	99	88.214	Panthera_pardus
ENSG00000261236	BOP1	100	98.928	ENSPTRG00000020690	BOP1	100	98.928	Pan_troglodytes
ENSG00000261236	BOP1	100	97.453	ENSPANG00000024950	BOP1	100	97.453	Papio_anubis
ENSG00000261236	BOP1	84	72.452	ENSPKIG00000020273	bop1	75	72.452	Paramormyrops_kingsleyae
ENSG00000261236	BOP1	93	64.571	ENSPMGG00000023998	bop1	93	67.134	Periophthalmus_magnuspinnatus
ENSG00000261236	BOP1	83	72.447	ENSPMAG00000004108	bop1	100	72.447	Petromyzon_marinus
ENSG00000261236	BOP1	98	77.582	ENSPCIG00000009070	BOP1	100	75.984	Phascolarctos_cinereus
ENSG00000261236	BOP1	94	66.856	ENSPFOG00000007988	bop1	94	66.667	Poecilia_formosa
ENSG00000261236	BOP1	83	70.370	ENSPLAG00000006820	bop1	96	64.888	Poecilia_latipinna
ENSG00000261236	BOP1	83	70.531	ENSPMEG00000015671	bop1	93	65.590	Poecilia_mexicana
ENSG00000261236	BOP1	94	66.620	ENSPREG00000015440	bop1	93	67.568	Poecilia_reticulata
ENSG00000261236	BOP1	75	98.401	ENSPPYG00000029621	-	99	98.401	Pongo_abelii
ENSG00000261236	BOP1	100	83.957	ENSPCAG00000006873	BOP1	100	83.957	Procavia_capensis
ENSG00000261236	BOP1	100	86.193	ENSPCOG00000023196	BOP1	100	86.059	Propithecus_coquereli
ENSG00000261236	BOP1	83	69.516	ENSPNYG00000010914	bop1	91	69.516	Pundamilia_nyererei
ENSG00000261236	BOP1	95	64.734	ENSPNAG00000008525	bop1	79	71.811	Pygocentrus_nattereri
ENSG00000261236	BOP1	100	82.708	ENSRNOG00000021773	Bop1	95	86.246	Rattus_norvegicus
ENSG00000261236	BOP1	100	96.515	ENSRBIG00000027555	BOP1	100	96.515	Rhinopithecus_bieti
ENSG00000261236	BOP1	90	95.522	ENSRROG00000043244	BOP1	94	96.510	Rhinopithecus_roxellana
ENSG00000261236	BOP1	84	41.018	YMR049C	-	82	41.018	Saccharomyces_cerevisiae
ENSG00000261236	BOP1	97	91.111	ENSSBOG00000030140	BOP1	94	91.961	Saimiri_boliviensis_boliviensis
ENSG00000261236	BOP1	84	84.430	ENSSHAG00000000887	BOP1	99	84.430	Sarcophilus_harrisii
ENSG00000261236	BOP1	88	70.348	ENSSFOG00015010596	bop1	98	71.406	Scleropages_formosus
ENSG00000261236	BOP1	94	66.714	ENSSMAG00000014623	bop1	93	67.137	Scophthalmus_maximus
ENSG00000261236	BOP1	82	68.548	ENSSDUG00000021097	bop1	100	63.869	Seriola_dumerili
ENSG00000261236	BOP1	83	69.378	ENSSLDG00000001209	bop1	100	63.158	Seriola_lalandi_dorsalis
ENSG00000261236	BOP1	100	61.751	ENSSPUG00000017700	BOP1	97	71.495	Sphenodon_punctatus
ENSG00000261236	BOP1	83	67.472	ENSSPAG00000013925	bop1	100	61.463	Stegastes_partitus
ENSG00000261236	BOP1	95	86.938	ENSSSCG00000005920	BOP1	99	91.149	Sus_scrofa
ENSG00000261236	BOP1	94	66.385	ENSTNIG00000018156	bop1	91	70.616	Tetraodon_nigroviridis
ENSG00000261236	BOP1	88	86.911	ENSTTRG00000006423	BOP1	99	79.433	Tursiops_truncatus
ENSG00000261236	BOP1	83	92.058	ENSVVUG00000007851	BOP1	91	92.058	Vulpes_vulpes
ENSG00000261236	BOP1	94	63.893	ENSXCOG00000019431	bop1	97	63.188	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	24120868.	IMP	Process
GO:0000448	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	-	IEA	Process
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	17353269.	IMP	Process
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005515	protein binding	16043514.16738141.17353269.25825154.	IPI	Function
GO:0005634	nucleus	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005730	nucleolus	-	IDA	Component
GO:0006364	rRNA processing	-	TAS	Process
GO:0008283	cell proliferation	16043514.	NAS	Process
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	17353269.	IC	Process
GO:0042254	ribosome biogenesis	16043514.	NAS	Process
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:0051726	regulation of cell cycle	16043514.	IMP	Process
GO:0070545	PeBoW complex	21873635.	IBA	Component
GO:0070545	PeBoW complex	16043514.16738141.17353269.	IDA	Component
GO:1901796	regulation of signal transduction by p53 class mediator	24120868.	IMP	Process
GO:1990904	ribonucleoprotein complex	18809582.	IDA	Component

EuRBPDB

Note: to get the extension of tumor abbreviations.

Select Dataset :

Input Drug :

Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Transcripts

Gene Model

GWAS

PPI

Ortholog

Gene Ontology

Note: Click here to get the extension of tumor abbreviations.

Select Dataset :

Input Drug :

Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Note: to get the extension of tumor abbreviations.