EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1156077195Missense_MutationnovelD314E0.11
BLCAchr1156077630SilentNAP169P0.39
BLCAchr1156077134Missense_MutationnovelR335W0.51
BLCAchr1156081561Missense_MutationNAE146D0.31
BLCAchr1156081621SilentNAL126L1
BLCAchr1156076917Missense_MutationNAS407C0.5
BLCAchr1156077290Missense_MutationnovelE283K0.18KH_1
BLCAchr1156077545Missense_MutationnovelE198K0.29
BRCAchr1156077339SilentNAP266P0.32
BRCAchr1156077207Missense_MutationnovelD310E0.06
BRCAchr11560749543'UTRnovel0.15
BRCAchr1156077270SilentnovelA289A0.08
BRCAchr11560732263'UTRnovel0.18
CESCchr11560754673'UTRnovel0.58
CESCchr1156077459SilentNAI226I0.39
CESCchr11560764153'UTRrs1443038400.38
CESCchr1156077593Nonsense_MutationNAR182*0.43
CESCchr1156081917Missense_MutationNAD28N0.46
CESCchr11560755713'UTRnovel0.32
CESCchr11560735543'UTRnovel0.34
CESCchr11560750133'UTRnovel0.8
CHOLchr11560765173'UTRnovel0.15
COADchr1156077159SilentNAP326P0.54
COADchr1156076945Missense_Mutationrs143845685A398T0.24
COADchr1156076756Missense_MutationnovelR461W0.31
COADchr1156081825SilentnovelA58A0.44
COADchr1156077297Silentrs368560209A280A0.24
COADchr1156076689Missense_MutationNAP483L0.22
COADchr1156076945Missense_Mutationrs143845685A398T0.36
COADchr1156077354SilentnovelS261S0.35
COADchr11560765543'UTRnovel0.44
COADchr1156076991Silentrs750127924Y382Y0.22
COADchr1156077457Missense_MutationnovelR227H0.3KH_1
COADchr1156076968Frame_Shift_DelNAP390Rfs*880.3
COADchr1156076841SilentnovelS432S0.54
DLBCchr1156077509Missense_MutationnovelS210P0.06
ESCAchr1156077581Missense_MutationnovelV186M0.43
ESCAchr1156077590Missense_Mutationrs771196067R183W0.31
ESCAchr1156081881SilentnovelL40L0.23
ESCAchr11560745093'UTRnovel0.32
GBMchr1156076580Missense_MutationnovelF519L0.1
HNSCchr1156077484Missense_MutationnovelP218L0.14
HNSCchr1156077091Missense_MutationnovelS349F0.08
KIRCchr1156077474Silentrs765160121P221P0.16
LGGchr1156077182Missense_MutationnovelD319N0.36
LIHCchr1156081975SilentNAG8G0.3
LUADchr1156077531Missense_MutationnovelM202I0.12
LUADchr1156081593Missense_MutationnovelV136I0.6
LUADchr1156077089Missense_MutationnovelG350C0.39
LUSCchr1156077052Frame_Shift_InsnovelD362Gfs*270.2
LUSCchr1156076943SilentnovelA398A0.33
LUSCchr1156077531Missense_MutationNAM202I0.2
OVchr1156077407Frame_Shift_DelnovelA244Qfs*2340.49KH_1
PAADchr1156076793SilentnovelP448P0.28
PAADchr1156077271Missense_MutationnovelA289V0.16
PRADchr1156076598SilentnovelT513T0.36
READchr1156077209Missense_Mutationrs758454571D310N0.42
READchr1156077284Missense_MutationNAE285K0.38KH_1
READchr1156076945Missense_Mutationrs143845685A398T0.32
SARCchr11560726443'UTRnovel0.49
SKCMchr11560765423'UTRnovel0.22
SKCMchr1156076646SilentnovelI497I0.54
SKCMchr1156077595Missense_MutationNAG181E0.67
SKCMchr1156077224SilentnovelL305L0.39
SKCMchr1156077563Missense_MutationNAE192K0.13
SKCMchr1156076587Missense_MutationNAR517Q0.3
STADchr1156076728Missense_MutationNAM470T0.17
STADchr1156077590Missense_Mutationrs771196067R183W0.22
STADchr11560764973'UTRnovel0.17
STADchr11560765593'UTRrs7477585970.33
STADchr1156077231Silentrs748583237N302N0.23
STADchr1156076959Missense_Mutationrs760022238A393V0.28
STADchr1156077247Missense_MutationNAE297G0.22
STADchr1156077309Silentrs778663471N276N0.2
STADchr1156076599Missense_MutationnovelT513M0.35
STADchr1156076611Missense_MutationNAH509R0.18
STADchr1156076587Missense_MutationNAR517Q0.23
STADchr1156077075Frame_Shift_InsnovelR355Tfs*40.23
STADchr1156077334Missense_MutationNAF268S0.36KH_1
STADchr1156077497Missense_MutationNAF214L0.5
STADchr1156077092Missense_Mutationrs747913417S349A0.12
THCAchr1156077526Missense_MutationnovelR204H0.08
THYMchr11560756483'UTRnovel0.06
UCECchr11560744803'UTRnovel0.3
UCECchr11560748513'UTRnovel0.27
UCECchr11560740463'UTRnovel0.56
UCECchr1156077111SilentNAI342I0.46
UCECchr11560736103'UTRnovel0.63
UCECchr1156077057SilentnovelG360G0.35
UCECchr11560735253'UTRnovel0.14
UCECchr11560739923'UTRnovel0.44
UCECchr11560765083'UTRnovel0.17
UCECchr11560746313'UTRnovel0.63
UCECchr1156077366Missense_MutationnovelI257M0.44KH_1
UCECchr1156081937Missense_MutationnovelC21Y0.37
UCECchr11560723283'UTRnovel0.29
UCECchr1156076815Missense_MutationnovelP441L0.39
UCECchr11560749373'UTRnovel0.09
UCECchr11560761773'UTRnovel0.36
UCECchr11560720263'UTRnovel0.18
UCECchr11560754133'UTRnovel0.64
UCECchr1156081916Missense_MutationnovelD28G0.21
UCECchr11560760803'UTRnovel0.31
UCECchr11560764023'UTRnovel0.44
UCECchr11560743143'UTRnovel0.57
UCECchr11560737453'UTRnovel0.56
UCECchr11560743143'UTRnovel0.33
UCECchr1156077302Missense_MutationnovelR279C0.38KH_1
UCECchr11560738333'UTRnovel0.43
UCECchr11560722843'UTRnovel0.13
UCECchr11560742853'UTRnovel0.16
UCECchr11560743143'UTRnovel0.33
UCECchr11560723073'UTRnovel0.25
UCECchr11560746853'UTRnovel0.5
UCECchr11560743983'UTRnovel0.34
UCECchr1156076620Missense_MutationnovelP506H0.21
UCECchr11560765693'UTRrs7729303510.24
UCECchr1156076961Missense_MutationNAW392C0.31
UCECchr11560743133'UTRnovel0.37
UCECchr11560757123'UTRnovel0.4

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.02080.0017831
ESCAAMP0.39670.0022446
KIRCAMP0.09280.059566
PAADAMP0.22830.085665
READAMP0.26670.025154
SKCMAMP0.48779.6912e-06
TGCTAMP0.340.088103
UCECAMP0.45081.3482e-23

Survival Analysis
CancerP-value Q-value
KIRC0.0039

Kaplan-Meier Survival Analysis

SARC0.0001

Kaplan-Meier Survival Analysis

MESO0.00017

Kaplan-Meier Survival Analysis

ACC0.00012

Kaplan-Meier Survival Analysis

UCS0.0059

Kaplan-Meier Survival Analysis

PCPG0.021

Kaplan-Meier Survival Analysis

BLCA0.033

Kaplan-Meier Survival Analysis

LAML0.013

Kaplan-Meier Survival Analysis

KICH0.049

Kaplan-Meier Survival Analysis

UCEC0.0016

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

LGG0.039

Kaplan-Meier Survival Analysis

LUAD0.034

Kaplan-Meier Survival Analysis

UVM0.014

Kaplan-Meier Survival Analysis

OV0.036

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000254726 (Gene tree)
Gene ID
92312
Gene Symbol
MEX3A
Alias
RNF162|RKHD4
Full Name
mex-3 RNA binding family member A
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
9,986 bases
Position
chr1:156,072,013-156,081,998
Accession
33482
RBP type
canonical RBP
Summary
(Mex-3 RNA Binding Family Member A) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is MEX3B.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000432845KH_1PF00013.293.7e-2512
ENSP00000432845KH_1PF00013.293.7e-2522
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23408853CDX2 regulation by the RNA-binding protein MEX3A: impact on intestinal differentiation and stemness.Nucleic Acids Res2013 AprPereira Bdoi: 10.1093/nar/gkt087
22692246Knockdown of hMex-3A by small RNA interference suppresses cell proliferation and migration in human gastric cancer cells.Mol Med Rep2012 SepJiang Hdoi: 10.3892/mmr.2012.943
28285904Mex3a Marks a Slowly Dividing Subpopulation of Lgr5+ Intestinal Stem Cells.Cell Stem Cell2017 Jun 1Barriga FMdoi: 10.1016/j.stem.2017.02.007
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000442784MEX3A-201664--- (aa)--
ENST00000532414MEX3A-2026124-ENSP00000432845520 (aa)-A1L020
Gene Model
Click here to download ENSG00000254726's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000254726rs618133241156080086?Body mass index30595370EFO_0004340
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000254726's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000254726MEX3A7750.562ENSG00000176624MEX3C9049.663
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000254726MEX3A10081.731ENSAMEG00000014265MEX3A10079.808Ailuropoda_melanoleuca
ENSG00000254726MEX3A7177.748ENSAPLG00000009476MEX3A9977.748Anas_platyrhynchos
ENSG00000254726MEX3A7376.240ENSACAG00000003739MEX3A10076.104Anolis_carolinensis
ENSG00000254726MEX3A10095.577ENSANAG00000032597MEX3A10095.577Aotus_nancymaae
ENSG00000254726MEX3A10099.038ENSBTAG00000019158MEX3A10099.038Bos_taurus
ENSG00000254726MEX3A10099.423ENSCJAG00000007711MEX3A10099.423Callithrix_jacchus
ENSG00000254726MEX3A6696.210ENSCAFG00000024440MEX3A10096.210Canis_familiaris
ENSG00000254726MEX3A10097.308ENSCAFG00020006171MEX3A10097.308Canis_lupus_dingo
ENSG00000254726MEX3A10098.846ENSCHIG00000012770MEX3A10098.846Capra_hircus
ENSG00000254726MEX3A8199.287ENSTSYG00000027006MEX3A8199.287Carlito_syrichta
ENSG00000254726MEX3A7197.832ENSCAPG00000011002MEX3A8697.832Cavia_aperea
ENSG00000254726MEX3A10087.692ENSCPOG00000020219MEX3A8397.257Cavia_porcellus
ENSG00000254726MEX3A10099.615ENSCCAG00000022351MEX3A10099.615Cebus_capucinus
ENSG00000254726MEX3A10099.615ENSCATG00000032390MEX3A10099.615Cercocebus_atys
ENSG00000254726MEX3A10092.500ENSCLAG00000003842MEX3A10092.500Chinchilla_lanigera
ENSG00000254726MEX3A10096.538ENSCSAG00000002097MEX3A10096.538Chlorocebus_sabaeus
ENSG00000254726MEX3A7179.467ENSCPBG00000025821MEX3A7278.933Chrysemys_picta_bellii
ENSG00000254726MEX3A8595.249ENSCANG00000013320MEX3A8799.274Colobus_angolensis_palliatus
ENSG00000254726MEX3A10096.929ENSCGRG00001000412Mex3a10096.929Cricetulus_griseus_chok1gshd
ENSG00000254726MEX3A8292.807ENSCGRG00000012989Mex3a8196.314Cricetulus_griseus_crigri
ENSG00000254726MEX3A5196.629ENSDNOG00000037981-10096.629Dasypus_novemcinctus
ENSG00000254726MEX3A8197.862ENSDORG00000002921Mex3a9297.579Dipodomys_ordii
ENSG00000254726MEX3A10099.038ENSEASG00005019131MEX3A10099.038Equus_asinus_asinus
ENSG00000254726MEX3A10099.231ENSECAG00000007279MEX3A10099.231Equus_caballus
ENSG00000254726MEX3A5391.901ENSEEUG00000009784MEX3A10091.901Erinaceus_europaeus
ENSG00000254726MEX3A10098.081ENSFCAG00000044236MEX3A10098.081Felis_catus
ENSG00000254726MEX3A6479.586ENSFALG00000014982MEX3A10078.698Ficedula_albicollis
ENSG00000254726MEX3A75100.000ENSFDAG00000008485MEX3A100100.000Fukomys_damarensis
ENSG00000254726MEX3A10074.624ENSGALG00000014016MEX3A7879.616Gallus_gallus
ENSG00000254726MEX3A10075.238ENSGAGG00000020700MEX3A10074.857Gopherus_agassizii
ENSG00000254726MEX3A7999.757ENSGGOG00000004513MEX3A8699.757Gorilla_gorilla
ENSG00000254726MEX3A10090.962ENSHGLG00000007612MEX3A10090.962Heterocephalus_glaber_female
ENSG00000254726MEX3A10087.885ENSHGLG00100013922MEX3A10087.885Heterocephalus_glaber_male
ENSG00000254726MEX3A10087.885ENSSTOG00000024275MEX3A10087.885Ictidomys_tridecemlineatus
ENSG00000254726MEX3A7762.439ENSLACG00000011943MEX3A9774.510Latimeria_chalumnae
ENSG00000254726MEX3A7195.122ENSLAFG00000009220MEX3A9995.122Loxodonta_africana
ENSG00000254726MEX3A10097.692ENSMFAG00000000628MEX3A10097.692Macaca_fascicularis
ENSG00000254726MEX3A10095.577ENSMNEG00000031569MEX3A10095.577Macaca_nemestrina
ENSG00000254726MEX3A8199.284ENSMLEG00000023495MEX3A9099.516Mandrillus_leucophaeus
ENSG00000254726MEX3A7179.467ENSMGAG00000015563MEX3A10078.933Meleagris_gallopavo
ENSG00000254726MEX3A10089.827ENSMAUG00000012601Mex3a10089.827Mesocricetus_auratus
ENSG00000254726MEX3A10099.423ENSMICG00000046214MEX3A10099.423Microcebus_murinus
ENSG00000254726MEX3A10088.506ENSMOCG00000017881Mex3a10088.506Microtus_ochrogaster
ENSG00000254726MEX3A10094.118ENSMODG00000016954MEX3A10096.154Monodelphis_domestica
ENSG00000254726MEX3A10097.313MGP_CAROLIEiJ_G0025170Mex3a10097.313Mus_caroli
ENSG00000254726MEX3A10096.929ENSMUSG00000074480Mex3a10096.929Mus_musculus
ENSG00000254726MEX3A10096.929MGP_PahariEiJ_G0026615Mex3a10096.929Mus_pahari
ENSG00000254726MEX3A7796.766ENSMPUG00000004774MEX3A10096.766Mustela_putorius_furo
ENSG00000254726MEX3A7196.477ENSMLUG00000010185MEX3A9496.477Myotis_lucifugus
ENSG00000254726MEX3A10096.538ENSNGAG00000019587Mex3a10096.538Nannospalax_galili
ENSG00000254726MEX3A8699.332ENSNLEG00000012329MEX3A10099.332Nomascus_leucogenys
ENSG00000254726MEX3A9980.192ENSOPRG00000002937MEX3A9991.392Ochotona_princeps
ENSG00000254726MEX3A10093.077ENSODEG00000009643MEX3A10093.077Octodon_degus
ENSG00000254726MEX3A10084.069ENSOCUG00000005640MEX3A10083.109Oryctolagus_cuniculus
ENSG00000254726MEX3A7898.759ENSOGAG00000029891MEX3A9998.759Otolemur_garnettii
ENSG00000254726MEX3A8287.765ENSOARG00000005471MEX3A10089.412Ovis_aries
ENSG00000254726MEX3A8595.701ENSPPAG00000016303MEX3A8399.758Pan_paniscus
ENSG00000254726MEX3A10095.777ENSPPRG00000006585MEX3A10095.777Panthera_pardus
ENSG00000254726MEX3A100100.000ENSPTRG00000030373MEX3A100100.000Pan_troglodytes
ENSG00000254726MEX3A9093.376ENSPANG00000020303MEX3A9693.376Papio_anubis
ENSG00000254726MEX3A10088.484ENSPEMG00000019014Mex3a10088.484Peromyscus_maniculatus_bairdii
ENSG00000254726MEX3A10094.118ENSPCIG00000018950MEX3A10093.169Phascolarctos_cinereus
ENSG00000254726MEX3A10096.154ENSPCOG00000019307MEX3A10096.154Propithecus_coquereli
ENSG00000254726MEX3A7695.685ENSPVAG00000010333MEX3A10095.685Pteropus_vampyrus
ENSG00000254726MEX3A8195.962ENSRNOG00000058654AC119762.39997.549Rattus_norvegicus
ENSG00000254726MEX3A7199.187ENSRBIG00000033197MEX3A8499.187Rhinopithecus_bieti
ENSG00000254726MEX3A7199.187ENSRROG00000029193MEX3A8499.187Rhinopithecus_roxellana
ENSG00000254726MEX3A10088.654ENSSBOG00000025317MEX3A10088.846Saimiri_boliviensis_boliviensis
ENSG00000254726MEX3A7194.681ENSSHAG00000013466MEX3A10094.681Sarcophilus_harrisii
ENSG00000254726MEX3A7197.554ENSSARG00000009868MEX3A10097.554Sorex_araneus
ENSG00000254726MEX3A7179.357ENSSPUG00000002522MEX3A9277.513Sphenodon_punctatus
ENSG00000254726MEX3A10098.846ENSSSCG00000006497MEX3A10098.846Sus_scrofa
ENSG00000254726MEX3A7178.667ENSTGUG00000003692MEX3A9878.133Taeniopygia_guttata
ENSG00000254726MEX3A7698.228ENSTTRG00000013346MEX3A8698.228Tursiops_truncatus
ENSG00000254726MEX3A7797.750ENSUAMG00000013807MEX3A9497.750Ursus_americanus
ENSG00000254726MEX3A10089.205ENSVVUG00000005834MEX3A10089.962Vulpes_vulpes
ENSG00000254726MEX3A7174.394ENSXETG00000012704mex3a10073.262Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body-IEAComponent
GO:0003723RNA binding22681889.HDAFunction
GO:0005634nucleus-IEAComponent
GO:0005829cytosol-IDAComponent
GO:0046872metal ion binding-IEAFunction
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