EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr41342012335'UTRnovel0.42
BRCAchr4134200229Missense_MutationnovelR264Q0.08
BRCAchr4134200496Missense_MutationNAR175Q0.16
BRCAchr4134200855Nonsense_MutationNAY55*0.13
BRCAchr41342010955'UTRnovel0.35
BRCAchr4134200488Missense_MutationNAR178C0.36
BRCAchr4134200711Missense_MutationNAK103N0.13
BRCAchr4134200560Missense_MutationnovelI154F0.13
BRCAchr4134200744SilentNAL92L0.31
CESCchr4134200930SilentnovelF30F0.4
CESCchr41341998953'UTRnovel0.63
CESCchr4134200086Missense_MutationNAE312K0.2RRM_5
CESCchr4134200038Missense_MutationnovelE328Q0.42RRM_5
COADchr41342012335'UTRnovel0.3
COADchr4134200107Missense_MutationNAD305N0.23RRM_5
COADchr4134200230Missense_MutationnovelR264W0.27
COADchr4134200091Missense_MutationnovelR310Q0.32RRM_5
COADchr4134200555SilentnovelE155E0.41
COADchr4134200158Missense_MutationnovelR288C0.34
COADchr4134200496Missense_MutationNAR175Q0.33
COADchr4134200756Silentrs746989490R88R0.38
COADchr41342011255'UTRrs7570424920.17
COADchr4134200350Missense_MutationNAD224Y0.24
COADchr4134200759SilentNAQ87Q0.56
COADchr4134200997Missense_Mutationrs369585514R8H0.3
COADchr4134200368Missense_MutationnovelS218C0.22
COADchr4134200406Missense_MutationnovelR205I0.31
COADchr4134199995Missense_MutationNAP342H0.08RRM_5
COADchr4134199956Missense_Mutationrs373992035R355H0.22RRM_5
COADchr4134200819SilentNAA67A0.36
COADchr4134200775Missense_MutationNAR82H0.32
COADchr4134200164Nonsense_Mutationrs540190827R286*0.31
COADchr4134200807Missense_MutationnovelM71I0.22
COADchr41342010385'UTRrs7615172200.09
COADchr41342011695'UTRNA0.25
COADchr4134200528SilentNAG164G0.12
COADchr4134200488Missense_MutationNAR178C0.16
COADchr4134200725Missense_MutationNAN99D0.31
COADchr4134200375Missense_MutationnovelK215N0.4
COADchr4134200443Missense_MutationNAY193H0.41
COADchr4134199919SilentnovelA367A0.62
COADchr4134200647Missense_MutationnovelL125I0.4
ESCAchr4134200937Missense_MutationnovelR28M0.67
ESCAchr4134200302Missense_MutationnovelH240Y0.24
HNSCchr4134200360Missense_MutationnovelK220N0.38
KIRCchr4134199919Silentrs779783392A367A0.21
KIRPchr4134199993Nonsense_MutationNAE343*0.27RRM_5
LIHCchr4134200379Missense_MutationNAG214V0.44
LIHCchr4134200209Nonsense_Mutationrs779118612R271*0.18
LIHCchr4134200056Missense_Mutationrs756917832V322F0.27RRM_5
LIHCchr4134200844Nonsense_MutationNAL59*0.46
LIHCchr4134200154Missense_MutationnovelG289V0.1
LIHCchr41342012055'UTRnovel0.39
LIHCchr4134199943SilentnovelS359S0.3
LUSCchr4134200901Missense_MutationnovelR40L0.43
READchr41342010765'UTRNA0.23
READchr41342011545'UTRNA0.29
SARCchr4134199947Missense_MutationnovelG358V0.42RRM_5
SARCchr41341998653'UTRnovel0.31
SARCchr41342010545'UTRnovel0.28
SARCchr4134199912Missense_MutationnovelH370N0.11
SARCchr4134200544Missense_MutationnovelG159A0.09
UCECchr4134200617Missense_MutationnovelG135C0.27
UCECchr4134200403Missense_MutationNAL206S0.31
UCECchr4134200086Missense_MutationNAE312K0.31RRM_5
UCECchr4134200414SilentnovelD202D0.42
UCECchr4134200711Missense_MutationNAK103N0.4
UCECchr4134200086Missense_MutationNAE312K0.46RRM_5
UCECchr41342011655'UTRnovel0.58
UCECchr41341998143'UTRnovel0.25
UCECchr4134200086Missense_MutationNAE312K0.46RRM_5
UCECchr4134200437Missense_MutationnovelK195Q0.38
UCECchr41342011125'UTRnovel0.38
UCECchr4134200433Frame_Shift_DelnovelN196Tfs*110.26
UCECchr4134200296Missense_MutationNAA242T0.37
UCECchr4134200086Missense_MutationNAE312K0.38RRM_5
UCECchr4134200340Missense_MutationnovelG227E0.48
UCECchr4134200086Missense_MutationNAE312K0.22RRM_5
UCECchr4134200862Missense_MutationnovelY53F0.33
UCECchr4134200086Missense_MutationNAE312K0.28RRM_5
UCECchr4134200350Missense_MutationNAD224Y0.46
UCECchr4134200288Missense_MutationnovelK244N0.27
UCECchr4134200293Missense_MutationNAA243T0.34
UCECchr4134200275Nonsense_MutationNAE249*0.12
UCECchr4134200058Missense_MutationNAR321I0.28RRM_5
UCECchr4134200948SilentNAD24D0.26
UCECchr4134200124Missense_MutationnovelN299S0.33RRM_5
UCECchr41342010275'UTRnovel0.6
UCECchr4134200049Missense_MutationnovelV324A0.36RRM_5
UCECchr4134200497Nonsense_MutationnovelR175*0.26

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.13332.13e-13
LUADDEL0.21120.050802
MESODEL0.36780.075661

Survival Analysis
CancerP-value Q-value
KIRC0.00011

Kaplan-Meier Survival Analysis

STAD0.0097

Kaplan-Meier Survival Analysis

SARC0.034

Kaplan-Meier Survival Analysis

MESO0.02

Kaplan-Meier Survival Analysis

UCS0.0078

Kaplan-Meier Survival Analysis

HNSC0.025

Kaplan-Meier Survival Analysis

BLCA0.0036

Kaplan-Meier Survival Analysis

CESC0.047

Kaplan-Meier Survival Analysis

LAML0.0059

Kaplan-Meier Survival Analysis

UVM0.026

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000254535 (Gene tree)
Gene ID
132430
Gene Symbol
PABPC4L
Alias
N
Full Name
poly(A) binding protein cytoplasmic 4 like
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
5,416 bases
Position
chr4:134,196,333-134,201,748
Accession
31955
RBP type
canonical RBP
Summary
(Poly(A) Binding Protein Cytoplasmic 4 Like) is a Protein Coding gene. Among its related pathways are mRNA surveillance pathway and RNA transport. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is PABPC4.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000463233RRM_5PF13893.63.6e-1413
ENSP00000463233RRM_5PF13893.63.6e-1423
ENSP00000463233RRM_5PF13893.63.6e-1433
ENSP00000463233RRM_1PF00076.227.1e-8514
ENSP00000463233RRM_1PF00076.227.1e-8524
ENSP00000463233RRM_1PF00076.227.1e-8534
ENSP00000463233RRM_1PF00076.227.1e-8544
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000421491PABPC4L-2014944XM_017007727ENSP00000463233370 (aa)-P0CB38
Gene Model
Click here to download ENSG00000254535's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
hsa03015mRNA surveillance pathwayKEGG
hsa03018RNA degradationKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000254535Apolipoproteins B8.28509725157023E-517903299
ENSG00000254535Platelet Count8.901e-005-
ENSG00000254535Platelet Count8.901e-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000254535's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000254535PABPC4L5034.722ENSG00000149187CELF18334.586
ENSG00000254535PABPC4L9430.178ENSG00000107105ELAVL29930.337
ENSG00000254535PABPC4L9533.613ENSG00000151923TIAL19833.613
ENSG00000254535PABPC4L7130.726ENSG00000135486HNRNPA19332.743
ENSG00000254535PABPC4L9731.361ENSG00000116001TIA19033.094
ENSG00000254535PABPC4L9863.265ENSG00000186288PABPC1L2A9863.265
ENSG00000254535PABPC4L9861.798ENSG00000174740PABPC59959.624
ENSG00000254535PABPC4L9972.162ENSG00000070756PABPC19973.832
ENSG00000254535PABPC4L9636.111ENSG00000100461RBM236436.111
ENSG00000254535PABPC4L9863.265ENSG00000184388PABPC1L2B9863.265
ENSG00000254535PABPC4L9742.105ENSG00000143368SF3B47842.105
ENSG00000254535PABPC4L9975.405ENSG00000090621PABPC410076.744
ENSG00000254535PABPC4L8631.707ENSG00000066044ELAVL18231.707
ENSG00000254535PABPC4L9731.395ENSG00000179950PUF606233.333
ENSG00000254535PABPC4L9963.514ENSG00000101104PABPC1L9861.728
ENSG00000254535PABPC4L6237.349ENSG00000099622CIRBP9837.179
ENSG00000254535PABPC4L9130.345ENSG00000121390PSPC15330.345
ENSG00000254535PABPC4L9537.500ENSG00000131051RBM399037.500
ENSG00000254535PABPC4L9967.838ENSG00000151846PABPC36167.838
ENSG00000254535PABPC4L8240.789ENSG00000102317RBM35840.789
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000254535PABPC4L10097.027ENSANAG00000017199PABPC4L8797.027Aotus_nancymaae
ENSG00000254535PABPC4L9989.702ENSBTAG00000046902PABPC4L9989.702Bos_taurus
ENSG00000254535PABPC4L10097.297ENSCJAG00000045332PABPC4L8697.297Callithrix_jacchus
ENSG00000254535PABPC4L9973.913ENSCAFG00020019182-5473.913Canis_lupus_dingo
ENSG00000254535PABPC4L9989.702ENSCHIG00000007231PABPC4L9989.702Capra_hircus
ENSG00000254535PABPC4L9880.896ENSCAPG00000000555PABPC4L10080.896Cavia_aperea
ENSG00000254535PABPC4L10078.378ENSCPOG00000033167PABPC4L10078.378Cavia_porcellus
ENSG00000254535PABPC4L10097.297ENSCCAG00000031681PABPC4L8697.297Cebus_capucinus
ENSG00000254535PABPC4L10083.784ENSCLAG00000017628PABPC4L10083.784Chinchilla_lanigera
ENSG00000254535PABPC4L10097.027ENSCANG00000037677PABPC4L10097.027Colobus_angolensis_palliatus
ENSG00000254535PABPC4L10082.973ENSCGRG00001002070Pabpc4l10082.973Cricetulus_griseus_chok1gshd
ENSG00000254535PABPC4L10082.973ENSCGRG00000020086Pabpc4l10082.973Cricetulus_griseus_crigri
ENSG00000254535PABPC4L10092.162ENSDNOG00000031077PABPC4L9592.162Dasypus_novemcinctus
ENSG00000254535PABPC4L9989.702ENSEASG00005007883PABPC4L9989.702Equus_asinus_asinus
ENSG00000254535PABPC4L9989.973ENSECAG00000031416PABPC4L9989.973Equus_caballus
ENSG00000254535PABPC4L9990.244ENSFCAG00000028270PABPC4L9990.244Felis_catus
ENSG00000254535PABPC4L9983.740ENSFDAG00000019606PABPC4L9983.740Fukomys_damarensis
ENSG00000254535PABPC4L10099.459ENSGGOG00000024991PABPC4L10099.459Gorilla_gorilla
ENSG00000254535PABPC4L9984.011ENSHGLG00000020104PABPC4L9984.011Heterocephalus_glaber_female
ENSG00000254535PABPC4L9984.011ENSHGLG00100020648PABPC4L9984.011Heterocephalus_glaber_male
ENSG00000254535PABPC4L10087.601ENSSTOG00000019472PABPC4L9987.601Ictidomys_tridecemlineatus
ENSG00000254535PABPC4L9982.927ENSJJAG00000004090Pabpc4l9982.927Jaculus_jaculus
ENSG00000254535PABPC4L10083.243ENSMAUG00000016313Pabpc4l10083.243Mesocricetus_auratus
ENSG00000254535PABPC4L10095.135ENSMICG00000029683PABPC4L10095.135Microcebus_murinus
ENSG00000254535PABPC4L10084.324ENSMOCG00000007551Pabpc4l10084.324Microtus_ochrogaster
ENSG00000254535PABPC4L10081.081MGP_CAROLIEiJ_G0024968Pabpc4l10081.081Mus_caroli
ENSG00000254535PABPC4L10081.351ENSMUSG00000090919Pabpc4l10081.351Mus_musculus
ENSG00000254535PABPC4L10081.622MGP_PahariEiJ_G0026409Pabpc4l10081.622Mus_pahari
ENSG00000254535PABPC4L10080.811MGP_SPRETEiJ_G0025903Pabpc4l10080.811Mus_spretus
ENSG00000254535PABPC4L9978.862ENSMLUG00000008254PABPC4L9978.862Myotis_lucifugus
ENSG00000254535PABPC4L10087.568ENSNGAG00000001502Pabpc4l10087.568Nannospalax_galili
ENSG00000254535PABPC4L10099.459ENSNLEG00000019300PABPC4L10099.459Nomascus_leucogenys
ENSG00000254535PABPC4L10087.568ENSOGAG00000026166PABPC4L10087.568Otolemur_garnettii
ENSG00000254535PABPC4L9999.690ENSPPAG00000043745PABPC4L9399.690Pan_paniscus
ENSG00000254535PABPC4L9989.702ENSPPRG00000018628PABPC4L9989.702Panthera_pardus
ENSG00000254535PABPC4L9990.244ENSPTIG00000010106PABPC4L9990.244Panthera_tigris_altaica
ENSG00000254535PABPC4L9999.690ENSPTRG00000045513-7899.690Pan_troglodytes
ENSG00000254535PABPC4L10083.243ENSPEMG00000012565Pabpc4l10083.243Peromyscus_maniculatus_bairdii
ENSG00000254535PABPC4L10095.135ENSPCOG00000025578PABPC4L10095.135Propithecus_coquereli
ENSG00000254535PABPC4L10081.892ENSRNOG00000029749Pabpc4l10081.892Rattus_norvegicus
ENSG00000254535PABPC4L10095.946ENSRBIG00000030229PABPC4L10095.946Rhinopithecus_bieti
ENSG00000254535PABPC4L10095.676ENSRROG00000020367PABPC4L10095.676Rhinopithecus_roxellana
ENSG00000254535PABPC4L10095.135ENSSBOG00000016382PABPC4L10095.135Saimiri_boliviensis_boliviensis
ENSG00000254535PABPC4L9984.282ENSSSCG00000009067PABPC4L9984.282Sus_scrofa
ENSG00000254535PABPC4L9989.431ENSUAMG00000001289PABPC4L9989.431Ursus_americanus
ENSG00000254535PABPC4L9989.431ENSUMAG00000014887PABPC4L9989.431Ursus_maritimus
ENSG00000254535PABPC4L8776.074ENSVVUG00000011060-7476.074Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0010494cytoplasmic stress granule21873635.IBAComponent
GO:1990904ribonucleoprotein complex21873635.IBAComponent
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