EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
29249663HN1L Promotes Triple-Negative Breast Cancer Stem Cells through LEPR-STAT3 Pathway.Stem Cell Reports2018 Jan 9Liu Ydoi: 10.1016/j.stemcr.2017.11.010

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr161691916SilentNAG89G0.18
BLCAchr161698848Missense_MutationnovelE141D0.46
BLCAchr161698953Missense_MutationnovelK176N0.11
BLCAchr161691901SilentnovelL84L0.61
BRCAchr1616990233'UTRnovel0.27
BRCAchr161685530Missense_MutationNAN46D0.76
CESCchr161691843Missense_MutationNAG65E0.23
CESCchr1617005943'UTRnovel0.44
CESCchr1617011583'UTRnovel0.5
COADchr1616990613'UTRnovel0.43
COADchr161697849Missense_MutationNAS125L0.09
COADchr1616991223'UTRnovel0.4
COADchr161685565Missense_MutationnovelI57M0.09
COADchr161697846Missense_MutationNAK124R0.09
COADchr161697849Missense_MutationNAS125L0.32
COADchr161685517Silentrs755954033N41N0.22
COADchr161698940Missense_MutationnovelR172H0.39
COADchr161691845Missense_MutationNAG66S0.37
GBMchr161691908Missense_MutationnovelP87S0.22
HNSCchr161685474Missense_MutationnovelL27R0.45
HNSCchr161698968SilentnovelP181P0.17
HNSCchr161691946SilentnovelV99V0.26
HNSCchr161697823Missense_MutationNAF116L0.25
KIRCchr161697809Splice_Regionnovel0.2
KIRCchr161698906Missense_MutationNAD161N0.19
KIRPchr161685485Frame_Shift_DelnovelP31Qfs*540.66
LUADchr161698975Nonsense_MutationnovelK184*0.28
LUSCchr161698880Missense_MutationnovelK152M0.21
LUSCchr161691942Missense_MutationnovelP98Q0.18
LUSCchr161698832Missense_MutationNAG136V0.23
OVchr161698988In_Frame_InsnovelS188_F189insFQN0.05
OVchr161685504Missense_MutationnovelS37C0.06
OVchr161685445Missense_MutationnovelM17I0.26
PAADchr1616990463'UTRnovel0.56
READchr161697849Missense_MutationNAS125L0.42
SKCMchr161698940Missense_MutationnovelR172P0.36
SKCMchr1616990663'UTRnovel0.29
SKCMchr161685480Missense_MutationNAG29E0.36
SKCMchr1616990613'UTRnovel0.38
SKCMchr161685555Missense_MutationnovelP54H0.16
SKCMchr161691880SilentNAP77P0.27
SKCMchr161685500Missense_MutationnovelP36S0.23
SKCMchr161698898Missense_MutationNAP158L0.17
SKCMchr161697839Missense_MutationNAE122K0.3
TGCTchr161698930Missense_MutationnovelP169A0.13
UCECchr1617013383'UTRnovel0.44
UCECchr161698826Missense_Mutationrs548126456P134L0.38
UCECchr161691890Nonsense_MutationNAR81*0.19
UCECchr161698958Missense_MutationNAL178P0.18
UCECchr1616990163'UTRnovel0.3
UCECchr161685754Intronnovel0.42
UCECchr161685466Silentrs775793002S24S0.42
UCECchr1617013783'UTRnovel0.14
UCECchr161691895SilentnovelQ82Q0.28
UCECchr161691890Nonsense_MutationNAR81*0.39
UCECchr161698863Missense_MutationnovelR146S0.07
UCECchr161685521Missense_MutationNAM43V0.12
UCECchr1616991303'UTRnovel0.25
UCECchr161685481SilentnovelG29G0.29
UCECchr1616990573'UTRnovel0.33
UCECchr161698931Missense_MutationNAP169L0.38
UCECchr161698933Missense_MutationNAR170G0.37
UCECchr161697849Missense_MutationNAS125L0.48
UCECchr161698875Silentrs530937320P150P0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.54440.22898
CHOLDEL0.11110.23475
ESCADEL0.28260.012791
LUADDEL0.1260.1886
UCSDEL0.51790.13407

Survival Analysis
CancerP-value Q-value
KIRC0.0023

Kaplan-Meier Survival Analysis

SARC0.0032

Kaplan-Meier Survival Analysis

MESO0.00017

Kaplan-Meier Survival Analysis

ACC0.00014

Kaplan-Meier Survival Analysis

HNSC0.021

Kaplan-Meier Survival Analysis

SKCM0.00011

Kaplan-Meier Survival Analysis

PRAD0.05

Kaplan-Meier Survival Analysis

BRCA0.032

Kaplan-Meier Survival Analysis

COAD0.011

Kaplan-Meier Survival Analysis

PAAD0.0022

Kaplan-Meier Survival Analysis

READ0.0029

Kaplan-Meier Survival Analysis

LAML0.021

Kaplan-Meier Survival Analysis

UCEC0.0003

Kaplan-Meier Survival Analysis

LIHC0.00064

Kaplan-Meier Survival Analysis

LGG0.00011

Kaplan-Meier Survival Analysis

LUAD0.013

Kaplan-Meier Survival Analysis

UVM0.011

Kaplan-Meier Survival Analysis

Drugs

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Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000206053 (Gene tree)
Gene ID
90861
Gene Symbol
JPT2
Alias
FLJ13092|L11|KIAA1426|C16orf34|HN1L
Full Name
Jupiter microtubule associated homolog 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
24,025 bases
Position
chr16:1,678,256-1,702,280
Accession
14137
RBP type
non-canonical RBP
Summary
(Jupiter Microtubule Associated Homolog 2) is a Protein Coding gene.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000566691JPT2-208601-ENSP00000454529115 (aa)-H3BMT0
ENST00000382711JPT2-203894-ENSP00000372158174 (aa)-Q9H910
ENST00000569256JPT2-213911--- (aa)--
ENST00000562569JPT2-205458-ENSP00000457344116 (aa)-H3BTV5
ENST00000565851JPT2-207565-ENSP00000457424167 (aa)-H3BU16
ENST00000567717JPT2-211857--- (aa)--
ENST00000566742JPT2-209593-ENSP00000454567190 (aa)-H3BMV3
ENST00000248098JPT2-2013718-ENSP00000248098190 (aa)-Q9H910
ENST00000566925JPT2-210570-ENSP0000045648777 (aa)-H3BS08
ENST00000569765JPT2-214782-ENSP0000045753698 (aa)-B4E1P3
ENST00000568376JPT2-212297--- (aa)--
ENST00000382710JPT2-202962-ENSP00000372157178 (aa)-A6NGP5
ENST00000562684JPT2-2063185-ENSP00000457694218 (aa)-Q9H910
ENST00000561516JPT2-2041065-ENSP0000045445970 (aa)-H3BMM8
Gene Model
Click here to download ENSG00000206053's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000206053's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000206053JPT29989.474ENSMUSG00000024165Jpt210079.474Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005634nucleus-IEAComponent
GO:0005829cytosol-IDAComponent
GO:0005886plasma membrane-IDAComponent
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