EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27509259Loss of GFAT1 promotes epithelial-to-mesenchymal transition and predicts unfavorable prognosis in gastric cancer.Oncotarget2016 Jun 21Duan Fdoi: 10.18632/oncotarget.9538.
26715276Altered glycometabolism affects both clinical features and prognosis of triple-negative and neoadjuvant chemotherapy-treated breast cancer.Tumour Biol2016 JunDong Tdoi: 10.1007/s13277-015-4729-8
27996048High expression of GFAT1 predicts poor prognosis in patients with pancreatic cancer.Sci Rep2016 Dec 20Yang Cdoi: 10.1038/srep39044.
30305725IL-8-induced O-GlcNAc modification via GLUT3 and GFAT regulates cancer stem cell-like properties in colon and lung cancer cells.Oncogene2019 FebShimizu Mdoi: 10.1038/s41388-018-0533-4

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr269363662Missense_MutationNAD78N0.36
BLCAchr269345923SilentnovelV362V0.17
BLCAchr269354507Missense_MutationnovelP223A0.06
BLCAchr269348196SilentNAQ328Q0.54
BLCAchr269328291Missense_MutationnovelQ625K0.13
BLCAchr269354521Missense_MutationnovelS218Y0.21
BLCAchr269342226Missense_MutationNAH377D0.17
BRCAchr269342194Missense_MutationNAL387F0.27
BRCAchr269350166Missense_MutationnovelS253R0.07
BRCAchr269327066Missense_MutationNAV635L0.23
BRCAchr269358385Missense_Mutationrs770856462R163W0.06
BRCAchr269374015Missense_MutationNAD36Y0.19
CESCchr269327039Missense_MutationnovelE644K0.42
CESCchr269345909Missense_MutationNAY367S0.38
CESCchr269338559Missense_MutationNAQ404E0.37
CESCchr269342202Missense_MutationnovelR385W0.25
CESCchr269326965SilentNAV668V0.25
CESCchr269354513Missense_MutationnovelH221D0.39
CESCchr269348178SilentNAI334I0.26
COADchr269328345Missense_MutationNAV607M0.26
COADchr269329321In_Frame_DelNAY567del0.31
COADchr269338031Missense_MutationnovelG450D0.31
COADchr269374093Missense_MutationNAY10H0.26
COADchr2693260853'UTRnovel0.42
COADchr269358463Missense_MutationNAE137K0.18
COADchr269345955Missense_MutationnovelE352K0.34
COADchr269326991Missense_MutationNAD660N0.17
DLBCchr269337960Missense_MutationnovelR474W0.32
ESCAchr269338497Missense_MutationnovelD424E0.08
GBMchr269328324Missense_MutationnovelD614Y0.29
GBMchr269338528Missense_MutationnovelV414A0.28
GBMchr269350125SilentnovelF266F0.49
GBMchr269363562Missense_Mutationrs189717232R111H0.21
GBMchr269363662Missense_MutationnovelD78Y0.23
GBMchr269348297Missense_Mutationrs764200601E295K0.37
GBMchr269356532Missense_MutationNAK190R0.08
HNSCchr269337994SilentnovelV462V0.38
HNSCchr269329719Missense_MutationNAR521H0.2
HNSCchr269374051Missense_MutationnovelI24L0.25
LAMLchr269338530SilentNAP413P0.08
LGGchr269327008Missense_Mutationrs751623973K654R0.28
LGGchr269370029Missense_MutationnovelK65N0.09
LGGchr269374069Missense_MutationnovelE18K0.22
LIHCchr269358464Splice_SitenovelX137_splice0.31
LUADchr269338496Nonsense_MutationNAR425*0.18
LUADchr269370097Missense_MutationnovelD43N0.47
LUADchr269350079Frame_Shift_DelnovelS282Vfs*40.64
LUADchr269337957Missense_MutationNAE475K0.25
LUADchr269348264Missense_MutationNAR306C0.24
LUADchr269374113Missense_MutationNAG3V0.3
LUADchr269374011Missense_MutationnovelS37F0.25
LUADchr269342170Missense_MutationNAS395R0.04
LUADchr269329771Missense_MutationNAV504L0.07
LUSCchr269329757SilentnovelL508L0.37
LUSCchr269358455Missense_MutationnovelK139N0.4
LUSCchr269370093Missense_MutationNAG44E0.06
LUSCchr269354536Missense_MutationnovelS213I0.18
LUSCchr269328374Missense_MutationnovelP597L0.37
LUSCchr269342251Splice_SiteNAX369_splice0.12
PAADchr269326205Missense_MutationnovelS695Y0.25
READchr269370080Missense_MutationnovelK48N0.06
READchr269370081Missense_MutationnovelK48R0.06
READchr269359305Missense_MutationnovelG124E0.37
READchr269348248Missense_Mutationrs536982477R311Q0.15
SKCMchr269348220SilentnovelP320P0.26
SKCMchr269348221Missense_MutationnovelP320L0.25
SKCMchr269342243Nonsense_MutationnovelL371*0.57
SKCMchr269350150Missense_MutationnovelR258H0.12
SKCMchr2693871165'UTRnovel0.38
SKCMchr2693871175'UTRnovel0.38
SKCMchr269359306Missense_MutationnovelG124R0.3
SKCMchr269374049Silentrs773258998I24I0.06
SKCMchr269338458SilentNAF437F0.52
SKCMchr269328433SilentNAI577I0.41
SKCMchr269337995Missense_MutationNAV462A0.11
STADchr2693261693'UTRnovel0.31
STADchr2693261713'UTRnovel0.26
STADchr269363563Missense_Mutationrs201322234R111C0.12
STADchr269338538Missense_MutationnovelE411Q0.1
STADchr269359275Missense_MutationNAK134T0.47
STADchr269350169Missense_MutationNAG252R0.38
STADchr269363562Missense_Mutationrs189717232R111H0.22
STADchr269342201Missense_MutationNAR385Q0.09
STADchr269328343SilentNAV607V0.31
STADchr269354498Missense_MutationNAY226H0.13
STADchr269342215Silentrs781010273E380E0.08
THCAchr269370093Missense_MutationNAG44E0.39
UCECchr269326191Nonstop_Mutationnovel*700Rext*260.36
UCECchr269348248Missense_Mutationrs536982477R311Q0.33
UCECchr269342199Missense_MutationnovelR386C0.13
UCECchr269374080Missense_MutationNAR14Q0.43
UCECchr269354313Splice_SitenovelX229_splice0.2
UCECchr269329724SilentNAE519E0.26
UCECchr269329688SilentnovelL531L0.11
UCECchr269329392Missense_Mutationrs755583835E544K0.21
UCECchr269358416SilentnovelI152I0.35
UCECchr269348215Missense_MutationNAR322Q0.22
UCECchr269326208Missense_MutationNAK694T0.15
UCECchr269359318Missense_Mutationrs776244383V120I0.2
UCECchr269328347Missense_MutationnovelP606H0.16
UCECchr269356506Missense_MutationnovelV199I0.47
UCECchr269348234Missense_MutationNAA316T0.24
UCECchr269342194SilentnovelL387L0.25
UCECchr269374071Missense_Mutationrs775399768R17Q0.29
UCECchr269342250Splice_SiteNAX369_splice0.32
UCECchr269328429Nonsense_MutationnovelE579*0.6
UCECchr2693260183'UTRnovel0.31
UCECchr269370028Missense_MutationnovelV66I0.43
UCECchr269338464Nonsense_MutationnovelC435*0.58
UCECchr269374086Missense_MutationnovelV12A0.51
UCECchr2693259233'UTRnovel0.43
UCECchr269363644Nonsense_MutationNAE84*0.42
UCECchr269359267Splice_SitenovelX136_splice0.23
UCECchr269342177Missense_MutationnovelG393E0.25
UCECchr269326967Missense_MutationnovelV668M0.33
UCECchr269326220Missense_MutationnovelR690Q0.18
UCECchr269338541Missense_MutationnovelT410S0.26
UCECchr269363628Missense_MutationnovelL89P0.32
UCECchr269348248Missense_Mutationrs536982477R311Q0.46
UCECchr269363569Missense_MutationNAP109T0.52
UCECchr269327072Missense_MutationnovelR633W0.38
UCECchr269328429Missense_MutationNAE579K0.48
UCECchr269337919SilentnovelE487E0.11
UCECchr269338027SilentnovelL451L0.04
UCECchr269363562Missense_Mutationrs189717232R111H0.51
UCECchr269348239Missense_MutationnovelR314Q0.35
UCSchr269326919Missense_MutationnovelY684H0.53

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRPDEL0.02430.08832
PAADDEL0.04890.2014
READDEL0.06670.19022

Survival Analysis
CancerP-value Q-value
KIRC0.011

Kaplan-Meier Survival Analysis

SARC0.0012

Kaplan-Meier Survival Analysis

SKCM0.032

Kaplan-Meier Survival Analysis

PRAD0.023

Kaplan-Meier Survival Analysis

BRCA0.023

Kaplan-Meier Survival Analysis

ESCA0.048

Kaplan-Meier Survival Analysis

KIRP0.0064

Kaplan-Meier Survival Analysis

COAD0.0014

Kaplan-Meier Survival Analysis

READ0.015

Kaplan-Meier Survival Analysis

LAML0.00032

Kaplan-Meier Survival Analysis

KICH0.022

Kaplan-Meier Survival Analysis

LIHC0.0071

Kaplan-Meier Survival Analysis

UVM0.00096

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000198380 (Gene tree)
Gene ID
2673
Gene Symbol
GFPT1
Alias
GFAT|GFA|GFAT1|GFPT
Full Name
glutamine--fructose-6-phosphate transaminase 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
67,486 bases
Position
chr2:69,319,769-69,387,254
Accession
4241
RBP type
non-canonical RBP
Summary
This gene encodes the first and rate-limiting enzyme of the hexosamine pathway and controls the flux of glucose into the hexosamine pathway. The product of this gene catalyzes the formation of glucosamine 6-phosphate. [provided by RefSeq, Sep 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000357308GFPT1-2018703XM_017003801ENSP00000349860699 (aa)XP_016859290Q06210
ENST00000361060GFPT1-2028632XM_017003802ENSP00000354347681 (aa)XP_016859291Q06210
ENST00000493759GFPT1-203524--- (aa)--
ENST00000494201GFPT1-204625--- (aa)--
Gene Model
Click here to download ENSG00000198380's gene model file
Pathways
Pathway IDPathway NameSource
hsa00250Alanine, aspartate and glutamate metabolismKEGG
hsa00520Amino sugar and nucleotide sugar metabolismKEGG
hsa01100Metabolic pathwaysKEGG
hsa04931Insulin resistanceKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000198380rs4410328269373551?Body fat percentage30593698[0.071-0.155] unit decrease0.11318EFO_0007800
ENSG00000198380rs4410328269373551?Body fat percentage30593698[0.078-0.182] unit decrease0.12996EFO_0007800
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000198380's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0004360glutamine-fructose-6-phosphate transaminase (isomerizing) activity21873635.IBAFunction
GO:0005829cytosol-TASComponent
GO:0006002fructose 6-phosphate metabolic process21873635.IBAProcess
GO:0006047UDP-N-acetylglucosamine metabolic process21873635.IBAProcess
GO:0006048UDP-N-acetylglucosamine biosynthetic process-IEAProcess
GO:0006048UDP-N-acetylglucosamine biosynthetic process-TASProcess
GO:0006112energy reserve metabolic process1460020.TASProcess
GO:0006487protein N-linked glycosylation21873635.IBAProcess
GO:0006541glutamine metabolic process-IEAProcess
GO:0032922circadian regulation of gene expression-ISSProcess
GO:0036498IRE1-mediated unfolded protein response-TASProcess
GO:0070062extracellular exosome20458337.HDAComponent
GO:0097367carbohydrate derivative binding-IEAFunction
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