EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
19521958Upregulation of myosin Va by Snail is involved in cancer cell migration and metastasis.Int J Cancer2010 Jan 1Lan Ldoi: 10.1002/ijc.24641.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1552397353Missense_MutationnovelK389N0.38
BLCAchr1552416224Missense_MutationnovelR178Q0.26
BLCAchr1552340354Missense_MutationNAE1361K0.13
BLCAchr1552428497Missense_MutationnovelE71K0.3
BLCAchr1552353628Missense_MutationNAE1200K0.08
BLCAchr1552346361Missense_MutationnovelR1320I0.27
BLCAchr1552340354Missense_MutationNAE1361K0.22
BLCAchr1552375421SilentnovelI820I0.42
BLCAchr1552407395SilentnovelN281N0.16
BLCAchr1552376434Missense_MutationNAR778Q0.29
BLCAchr1552416267Missense_MutationnovelE164Q0.2
BLCAchr1552317108Frame_Shift_InsnovelK1758Nfs*50.05
BLCAchr1552364698SilentnovelT1055T0.44
BLCAchr1552321363Missense_MutationnovelM1624I0.49
BLCAchr1552370285Missense_Mutationrs373825708R984W0.86
BLCAchr1552410362Missense_MutationNAL243F0.33
BRCAchr1552375447SilentNAL812L0.14
BRCAchr15523136343'UTRnovel0.12
BRCAchr1552319097Missense_MutationnovelK1708E0.1
BRCAchr1552351465Nonsense_MutationNAS1213*0.23
BRCAchr1552319248SilentnovelG1657G0.42
BRCAchr1552367103Missense_MutationNAE1030K0.39
BRCAchr1552370240SilentNAL999L0.14
BRCAchr1552353897Nonsense_MutationNAE1181*0.35
BRCAchr1552353648Missense_MutationNAR1193T0.19
BRCAchr1552343175Nonsense_MutationNAE1328*0.12
BRCAchr1552360030Missense_Mutationrs770697352E1121K0.3
BRCAchr1552327897SilentNAR1530R0.24
BRCAchr1552370195Missense_MutationNAD1014H0.52
BRCAchr1552375443Missense_Mutationrs561485938R813H0.25
BRCAchr1552376530In_Frame_InsnovelT746delinsKKCSTSP0.04
BRCAchr1552376532Frame_Shift_InsnovelT746Nfs*250.02
BRCAchr1552353964SilentNAL1158L0.28
CESCchr1552353628Missense_MutationNAE1200K0.24
CESCchr1552389291Missense_MutationnovelE539K0.32
CESCchr1552416155Missense_MutationnovelP201R0.21
CESCchr1552372132Missense_MutationNAD937H0.11
CESCchr1552337836IntronNA0.44
CESCchr1552405361Nonsense_MutationNAR327*0.22
CESCchr1552379639Missense_MutationNAE732K0.3
CESCchr1552328004Missense_MutationnovelL1495M0.37
CESCchr1552360068Missense_MutationnovelP1108H0.11
CESCchr1552364586Missense_MutationNAD1093N0.26
CESCchr1552343170SilentnovelL1329L0.22
CESCchr15523134113'UTRnovel0.37
COADchr1552387854Missense_MutationNAQ576R0.22
COADchr1552372305Missense_Mutationrs569010771R879H0.3
COADchr1552389308Missense_MutationNAN533S0.45
COADchr1552321491Missense_MutationNAT1582A0.2
COADchr1552375335Missense_Mutationrs754654495R849Q0.29
COADchr1552353906Missense_Mutationrs767451086R1178C0.16
COADchr1552367056SilentNAI1045I0.21
COADchr1552376399Missense_MutationNAR790W0.22
COADchr1552383159Missense_MutationnovelE648D0.08
COADchr1552376533Missense_MutationnovelK745M0.39
COADchr1552396367SilentnovelE450E0.38
COADchr1552340332Missense_Mutationrs753717165R1368H0.13
COADchr1552379889Missense_MutationnovelV678M0.05
COADchr1552317191Missense_Mutationrs369584772R1731C0.38
COADchr1552375368Missense_MutationnovelR838Q0.35
COADchr1552351480Missense_Mutationrs778992454R1208H0.39
COADchr1552428521Nonsense_MutationNAR63*0.43
COADchr1552375380Missense_MutationNAY834F0.34
COADchr1552327902Missense_MutationNAV1529L0.43
COADchr1552372321Missense_MutationNAR874W0.22
COADchr1552389302Missense_MutationnovelC535S0.31
COADchr1552370265Missense_MutationNAE990D0.38
COADchr1552410336SilentNAF251F0.46
COADchr1552405303Missense_MutationNAD346G0.2
COADchr1552397258Missense_MutationNAQ421R0.08
COADchr1552364695Missense_MutationnovelM1056I0.06
COADchr1552384234Missense_Mutationrs751663129R614Q0.29
COADchr1552321366SilentnovelP1623P0.36
COADchr15523136633'UTRnovel0.18
COADchr1552317076Missense_MutationNAS1769Y0.21
COADchr1552376523SilentnovelI748I0.11
COADchr1552383120SilentnovelI661I0.12
COADchr1552396371Missense_MutationNAF449C0.13
COADchr1552397246Missense_MutationnovelS425Y0.24
COADchr1552319095SilentNAK1708K0.3
COADchr1552351291Missense_MutationNAS1271Y0.26
COADchr1552405361Nonsense_MutationNAR327*0.44
COADchr1552336477Frame_Shift_InsnovelI1440Nfs*190.44
COADchr1552317074Missense_MutationnovelM1770L0.57
COADchr1552353988SilentnovelL1150L0.08
COADchr1552383100Missense_MutationnovelF668S0.52
COADchr1552375377Missense_MutationnovelK835R0.3
COADchr1552389297Missense_MutationNAL537I0.22
COADchr1552410392Nonsense_MutationNAR233*0.21
COADchr1552384234Missense_Mutationrs751663129R614Q0.24
ESCAchr1552379840Missense_MutationnovelA694V0.16
ESCAchr1552384255Missense_MutationnovelS607L0.21
GBMchr1552372345Missense_MutationnovelA866T0.42
GBMchr1552425917Missense_MutationnovelI123S0.43
GBMchr1552405300Missense_MutationnovelS347N0.13
GBMchr15523136263'UTRnovel0.13
GBMchr1552397212SilentnovelL436L0.05
GBMchr1552319187Missense_MutationnovelH1678D0.06
GBMchr1552319324Missense_MutationnovelH1632L0.54
HNSCchr1552384309Missense_MutationnovelP589L0.56
HNSCchr1552433258Missense_MutationnovelE19Q0.28
HNSCchr1552317209Nonsense_MutationnovelQ1725*0.33
HNSCchr1552379834Missense_MutationnovelG696D0.12
HNSCchr1552392040Missense_MutationnovelM478V0.16
HNSCchr1552405360Missense_Mutationrs548669169R327Q0.24
HNSCchr1552372217SilentnovelL908L0.34
HNSCchr1552397330Missense_MutationnovelT397K0.23
HNSCchr1552405374Missense_MutationnovelQ322H0.26
HNSCchr1552327860Missense_MutationnovelV1543L0.21
HNSCchr1552367068SilentnovelL1041L0.19
HNSCchr1552364585Missense_MutationnovelD1093V0.32
HNSCchr1552379851SilentnovelI690I0.21
HNSCchr1552313839Nonsense_MutationnovelR1809*0.31
HNSCchr1552327920SilentnovelL1523L0.12
HNSCchr1552317191Missense_MutationnovelR1731G0.12
HNSCchr1552379904Missense_MutationNAD673H0.26
HNSCchr1552433232SilentnovelL27L0.12
HNSCchr1552319099Missense_Mutationrs758007236R1707Q0.08
HNSCchr1552376497Missense_MutationnovelY757F0.23
HNSCchr1552340332Missense_Mutationrs753717165R1368L0.17
KIRCchr1552353639Missense_MutationNAI1196S0.22
KIRCchr1552353994SilentNAV1148V0.18
KIRCchr1552428453SilentNAV85V0.08
KIRCchr1552410382Missense_MutationNAG236A0.07
KIRPchr1552407329SilentnovelK303K0.33
KIRPchr1552323416Missense_MutationnovelS1555C0.42
KIRPchr1552314174SilentNAP1788P0.35
LAMLchr1552416177Missense_MutationnovelE194K0.07
LGGchr1552428416Missense_MutationNAL98V0.33
LGGchr1552330448Missense_MutationNAR1462Q0.37
LGGchr1552376454SilentnovelI771I0.27
LGGchr1552330449Nonsense_MutationNAR1462*0.45
LGGchr1552313719SilentnovelL1849L0.08
LGGchr1552340384Missense_MutationnovelS1351P0.15
LGGchr1552379713Frame_Shift_DelnovelF707Sfs*70.41
LIHCchr1552343122SilentnovelA1345A0.13
LIHCchr1552360080Missense_MutationNAH1104R0.26
LIHCchr1552330493Missense_MutationNAQ1447L0.67
LIHCchr1552346433Frame_Shift_DelnovelL1296Wfs*70.42
LIHCchr1552319271Missense_MutationnovelT1650S0.37
LUADchr1552364633Missense_MutationnovelR1077K0.11
LUADchr1552353608SilentNAL1206L0.05
LUADchr1552319281SilentnovelL1646L0.13
LUADchr1552372319SilentNAR874R0.36
LUADchr1552353980Nonsense_MutationNAS1153*0.2
LUADchr1552379859Nonsense_MutationnovelE688*0.39
LUADchr1552428433Missense_MutationnovelR92L0.05
LUADchr1552319301Missense_MutationnovelG1640W0.12
LUADchr1552397220Missense_MutationnovelG434C0.37
LUADchr1552370237Missense_MutationnovelE1000K0.26
LUADchr1552330392Nonsense_MutationNAK1481*0.19
LUADchr1552354000SilentNAK1146K0.17
LUADchr1552397330Missense_Mutationrs761247058T397M0.24
LUADchr1552317222Missense_MutationnovelR1720S1
LUADchr1552353884Missense_MutationnovelR1185L0.32
LUADchr1552408141Splice_SitenovelX253_splice0.07
LUADchr1552372168Missense_MutationNAM925L0.28
LUADchr1552343146SilentnovelL1337L0.76
LUADchr1552351267Missense_MutationNAA1279V0.15
LUSCchr1552360037SilentnovelS1118S0.32
LUSCchr1552351325Missense_MutationnovelD1260Y0.24
LUSCchr1552321455Missense_MutationNAD1594H0.14
LUSCchr1552425907SilentNAA126A0.33
LUSCchr1552367110SilentNAL1027L0.08
LUSCchr1552397211Missense_MutationnovelD437H0.62
LUSCchr1552375404Missense_MutationNAR826P0.2
LUSCchr1552408114SilentNAI261I0.3
LUSCchr1552327963SilentnovelL1508L0.22
LUSCchr1552364617Silentrs755587361L1082L0.11
LUSCchr1552379839SilentnovelA694A0.33
LUSCchr1552327928Missense_MutationNAA1520V0.2
LUSCchr1552367100Missense_MutationNAN1031H0.19
LUSCchr1552376433SilentnovelR778R0.69
LUSCchr1552370283SilentnovelR984R0.42
LUSCchr1552428537SilentNAK57K0.3
LUSCchr1552379653Missense_MutationnovelC727F0.18
LUSCchr1552384284Missense_MutationnovelK597N0.17
MESOchr1552351259Missense_MutationnovelP1282T0.22
OVchr1552425959Missense_MutationNAA109G0.44
OVchr1552425950Nonsense_MutationnovelP112delinsQMKGLV*S0.11
OVchr1552425951Frame_Shift_InsnovelP112Vfs*350.05
OVchr1552397216Missense_MutationnovelV435G0.11
OVchr1552370225Missense_MutationnovelS1004T0.08
OVchr1552353983Missense_MutationnovelM1152R0.04
OVchr1552319077Missense_MutationnovelS1714R0.1
OVchr1552353934SilentnovelE1168E0.08
OVchr1552397279Missense_MutationNAW414S0.15
OVchr1552375301Splice_Regionnovel0.37
OVchr1552319229Missense_MutationnovelI1664F0.61
OVchr1552370306Missense_Mutationrs373690028E977K0.3
OVchr1552319079Missense_MutationnovelS1714R0.2
OVchr1552313776Missense_MutationnovelP1830S0.18
OVchr1552340390SilentnovelL1349L0.48
PAADchr1552351400Missense_MutationnovelP1235S0.32
PAADchr1552379821Splice_SitenovelX700_splice0.15
PAADchr1552364656Silentrs183302379L1069L0.09
PCPGchr1552353902Missense_MutationnovelK1179T0.13
PRADchr1552372203Missense_MutationNAR913H0.26
PRADchr1552375443Missense_Mutationrs561485938R813H0.34
PRADchr1552340251Missense_MutationnovelA1395V0.14
PRADchr1552372342Missense_MutationnovelV867I0.17
READchr15523136023'UTRnovel0.42
READchr1552428520Missense_Mutationrs766669585R63Q0.43
READchr1552389246Missense_MutationNAA554S0.26
READchr1552370378Missense_MutationNAL953M0.43
READchr1552319198Missense_MutationNAV1674D0.08
READchr1552330465SilentNAI1456I0.36
SKCMchr15523136613'UTRnovel0.27
SKCMchr1552359982Missense_MutationNAP1137S0.56
SKCMchr1552416275Missense_MutationNAV161A0.29
SKCMchr1552372308Missense_MutationNAA878V0.3
SKCMchr1552330476Missense_Mutationrs147898420P1453S0.22
SKCMchr1552353900Missense_MutationnovelE1180K0.28
SKCMchr1552313760Missense_MutationNAS1835F0.06
SKCMchr1552323393Nonsense_MutationnovelS1559_R1563delins*0.23
SKCMchr1552364579Missense_MutationNAL1095P0.36
SKCMchr1552372253SilentNAF896F0.36
SKCMchr1552351389Silentrs374975383T1238T0.3
SKCMchr1552389255Nonsense_MutationNAQ551*0.19
SKCMchr1552428421Missense_MutationNAS96F0.19
SKCMchr1552330424Missense_MutationnovelE1470G0.29
SKCMchr1552330425Missense_MutationnovelE1470K0.29
SKCMchr1552433260Missense_Mutationrs753155018P18L0.42
SKCMchr1552433261Missense_MutationnovelP18S0.43
SKCMchr1552353885Missense_MutationnovelR1185C0.27
SKCMchr1552353886SilentnovelL1184L0.26
SKCMchr1552351262Nonsense_MutationnovelQ1281*0.41
SKCMchr1552379880SilentNAL681L0.3
SKCMchr1552376517SilentNAF750F0.46
SKCMchr1552379899SilentNAE674E0.24
SKCMchr1552389355SilentNAK517K0.36
SKCMchr1552319104Silentrs779762270L1705L0.07
STADchr1552397333Missense_MutationnovelA396V0.39
STADchr1552375443Missense_Mutationrs561485938R813L0.37
STADchr1552410351Missense_MutationnovelK246N0.11
STADchr1552397235Missense_MutationnovelQ429K0.34
STADchr1552376431Missense_MutationnovelG779V0.45
STADchr1552397412Missense_MutationNAE370K0.15
STADchr1552397258Missense_MutationNAQ421R0.32
STADchr1552370301SilentnovelA978A0.33
STADchr1552376366Missense_Mutationrs376727710R801W0.4
STADchr1552384197SilentnovelQ626Q0.37
STADchr1552351406Missense_MutationNAS1233G0.28
STADchr1552396331SilentNAQ462Q0.25
STADchr1552387874Frame_Shift_DelnovelK569Rfs*50.29
STADchr15523136553'UTRrs7709809790.43
STADchr1552372317Missense_MutationnovelG875D0.39
STADchr1552314174SilentNAP1788P0.31
STADchr1552397321Missense_MutationNAR400H0.3
STADchr1552372124Splice_RegionNAQ939Q0.26
STADchr1552433249Missense_MutationNAW22R0.15
STADchr1552327861Frame_Shift_DelnovelV1543Yfs*20.16
STADchr1552407359SilentNAS293S0.31
STADchr1552376399Missense_MutationNAR790W0.33
STADchr1552330449Nonsense_MutationNAR1462*0.13
STADchr1552370257Missense_MutationNAA993V0.25
STADchr1552319297Missense_MutationNAV1641A0.23
STADchr1552323386Frame_Shift_DelnovelL1565Cfs*40.38
STADchr1552379850Nonsense_MutationnovelR691*0.23
STADchr1552370419Splice_SiteNAX940_splice0.23
STADchr1552376476Missense_MutationNAD764G0.1
STADchr1552376452Missense_Mutationrs185892206R772Q0.15
TGCTchr1552379633SilentnovelL734L0.06
TGCTchr1552353625Missense_MutationnovelL1201V0.08
THCAchr1552317108In_Frame_InsnovelK1758delinsNIFL0.1
UCECchr1552389237Splice_SiteNAX556_splice0.33
UCECchr15523135763'UTRnovel0.34
UCECchr1552323360Nonsense_MutationNAE1574*0.29
UCECchr1552370192Nonsense_MutationNAR1015*0.27
UCECchr1552314204Splice_SitenovelX1779_splice0.47
UCECchr1552351291Missense_MutationNAS1271Y0.28
UCECchr1552407366Missense_MutationnovelG291E0.4
UCECchr1552330364Missense_MutationNAN1490S0.29
UCECchr1552370341Missense_Mutationrs199883205R965Q0.12
UCECchr1552376540Missense_MutationNAF743L0.35
UCECchr1552396382Missense_MutationNAE445D0.47
UCECchr1552397287SilentNAL411L0.46
UCECchr1552410370Missense_MutationNAR240I0.39
UCECchr1552319185SilentnovelH1678H0.41
UCECchr1552327935Nonsense_MutationNAR1518*0.31
UCECchr1552353648Missense_MutationnovelR1193I0.21
UCECchr1552383165SilentnovelL646L0.1
UCECchr1552407376Missense_MutationnovelT288A0.42
UCECchr1552327935Nonsense_MutationNAR1518*0.41
UCECchr15523134223'UTRnovel0.4
UCECchr1552336478Frame_Shift_DelnovelI1440Lfs*40.36
UCECchr1552340343Silentrs781406210A1364A0.42
UCECchr1552353875Missense_MutationnovelA1188V0.44
UCECchr1552387833Missense_MutationnovelS583N0.32
UCECchr1552317063SilentnovelA1773A0.45
UCECchr1552319274Nonsense_MutationNAR1649*0.37
UCECchr1552425937SilentnovelL116L0.33
UCECchr15523134153'UTRnovel0.4
UCECchr1552387851Missense_MutationNAI577S0.33
UCECchr1552389242Missense_MutationnovelD555G0.07
UCECchr1552375390Missense_Mutationrs200320492R831C0.21
UCECchr1552379858Missense_MutationNAE688G0.34
UCECchr1552313816Frame_Shift_InsnovelQ1816Hfs*250.04
UCECchr1552330499Nonsense_MutationnovelV1445delinsEILI*L0.04
UCECchr1552397463Missense_MutationnovelK353E0.44
UCECchr1552367055Missense_Mutationrs56132571V1046M0.4
UCECchr15523136443'UTRnovel0.08
UCECchr1552313798Frame_Shift_InsnovelH1823Tfs*570.08
UCECchr1552313800Frame_Shift_InsnovelK1822Efs*580.06
UCECchr1552351291Missense_MutationNAS1271Y0.21
UCECchr1552376366Missense_Mutationrs376727710R801W0.16
UCECchr1552396345Frame_Shift_InsnovelN458Gfs*300.07
UCECchr1552405300Missense_MutationnovelS347N0.1
UCECchr1552410397Missense_MutationNAR231I0.27
UCECchr1552416230Missense_MutationNAA176V0.33
UCECchr1552428434Missense_MutationNAR92C0.31
UCECchr1552375336Nonsense_MutationnovelR849*0.19
UCECchr1552383099Missense_MutationnovelF668L0.25
UCECchr1552405312Missense_Mutationrs527359862R343Q0.36
UCECchr15523136183'UTRnovel0.43
UCECchr15523132353'UTRnovel0.56
UCECchr15523135713'UTRnovel0.4
UCECchr1552372278Missense_MutationnovelA888V0.38
UCECchr1552416224Missense_MutationnovelR178Q0.49
UCECchr15523087283'UTRnovel0.09
UCECchr15523133763'UTRnovel0.25
UCECchr1552340344Missense_MutationnovelA1364V0.44
UCECchr1552410366SilentnovelT241T0.17
UCECchr1552416293Missense_MutationnovelR155Q0.48
UCECchr15523134623'UTRnovel0.36
UCECchr1552319292Missense_MutationnovelP1643S0.26
UCECchr1552389353Missense_MutationnovelG518V0.26
UCECchr1552376408Missense_MutationnovelL787I0.16
UCECchr15523128303'UTRnovel0.4
UCECchr1552384249Missense_Mutationrs781079093R609H0.38
UCECchr1552348828Splice_SiteNAX1284_splice0.34
UCECchr15523130073'UTRnovel0.38
UCECchr1552319200Silentrs768731860S1673S0.62
UCECchr1552370342Nonsense_MutationNAR965*0.22
UCECchr15523136363'UTRnovel0.46
UCECchr1552376486Missense_MutationnovelL761V0.43
UCECchr1552405365Missense_MutationNAI325M0.29
UCECchr1552323421Silentrs754004948T1553T0.44
UCECchr1552351427Missense_Mutationrs766026322R1226C0.52
UCECchr1552353972Missense_MutationnovelL1156I0.5
UCECchr1552384250Missense_Mutationrs192993048R609C0.38
UCECchr1552317076Missense_MutationNAS1769Y0.52
UCECchr1552327858SilentnovelV1543V0.43
UCECchr1552372184Missense_MutationnovelK919N0.17
UCECchr1552408111Missense_MutationnovelF262L0.58
UCECchr1552396358SilentNAC453C0.47
UCECchr1552405292Missense_MutationnovelI350V0.62
UCECchr1552364604Missense_Mutationrs766723050R1087C0.26
UCECchr15523131043'UTRnovel0.11
UCECchr15523135673'UTRnovel0.27
UCECchr1552353621Missense_MutationnovelE1202G0.14
UCECchr1552370257Missense_MutationNAA993V0.32
UCECchr1552379838Missense_MutationnovelA695T0.35
UCECchr15523132113'UTRnovel0.13
UCECchr1552367097Missense_Mutationrs754856360T1032A0.2
UCECchr1552425931Missense_Mutationrs747516586I118M0.23
UCECchr1552323384Missense_MutationnovelH1566Y0.44
UCECchr1552314148Missense_MutationnovelS1797Y0.57
UCECchr1552336522Missense_Mutationrs201575346T1425M0.33
UCECchr1552364690Missense_MutationnovelK1058T0.38
UCECchr1552397330Missense_Mutationrs761247058T397M0.4
UCECchr1552428474SilentnovelS78S0.16
UCECchr1552379894Missense_MutationnovelR676M0.32
UCECchr15523087793'UTRnovel0.31
UCECchr15523118593'UTRnovel0.5
UCECchr1552351427Missense_Mutationrs766026322R1226C0.31
UCECchr1552397233SilentnovelQ429Q0.34
UCECchr1552340312Missense_MutationNAK1375E0.12
UCECchr1552387858Nonsense_MutationnovelE575*0.06
UCECchr1552425917Missense_MutationNAI123T0.2
UCECchr1552408064Missense_MutationNAR278P0.39
UCECchr15523117673'UTRnovel0.27
UCECchr1552319149Missense_MutationnovelK1690N0.11
UCECchr1552336516Missense_Mutationrs368488059R1427H0.13
UCECchr1552337835Intronrs7510519820.28
UCECchr1552397295Missense_MutationNAA409T0.18
UCECchr1552321366SilentnovelP1623P0.31
UCECchr1552348819Missense_Mutationrs753550026K1286M0.55
UCECchr1552379633SilentnovelL734L0.59
UCECchr1552319329SilentnovelL1630L0.07
UCECchr1552319330Missense_MutationnovelL1630Q0.07
UCECchr15523133923'UTRnovel0.5
UCECchr1552337870Intronnovel0.39
UCECchr1552367056SilentNAI1045I0.5
UCECchr1552387843Missense_MutationNAL580I0.44
UCECchr1552408064Missense_MutationNAR278Q0.46
UCECchr1552425954Missense_MutationNAN111H0.46
UCECchr1552383128Missense_Mutationrs762594836R659C0.42
UCECchr1552387888Missense_MutationNAL565I0.29
UCECchr1552389281Missense_Mutationrs769248373R542H0.33
UCECchr1552351335Silentrs373420132S1256S0.28
UCECchr1552392057Missense_MutationnovelL472S0.29
UCECchr1552323368Missense_MutationnovelY1571C0.27
UCECchr1552330470Nonsense_MutationnovelQ1455*0.23
UCECchr1552370234Nonsense_MutationnovelQ1001*0.24
UCECchr1552372204Missense_Mutationrs779455603R913C0.45
UCECchr1552376366Missense_Mutationrs376727710R801W0.42
UCECchr1552392018Missense_MutationnovelT485I0.22
UCECchr1552397388Missense_Mutationrs575067651R378W0.24
UCECchr1552405310Missense_MutationnovelD344N0.3
UCECchr1552428405Silentrs770112853T101T0.17
UCECchr1552340296Missense_Mutationrs759219111R1380Q0.4
UCECchr1552410392Nonsense_MutationNAR233*0.5
UCECchr1552428405Silentrs770112853T101T0.34
UCECchr1552313798Nonsense_MutationnovelH1823Dfs*40.07
UCECchr1552379710Missense_MutationnovelS708N0.32
UCECchr1552323368Missense_MutationnovelY1571C0.42
UCECchr1552428436Missense_MutationnovelV91A0.5
UCECchr1552336478Frame_Shift_DelnovelI1440Lfs*40.14
UCECchr1552379839Silentrs193027836A694A0.27
UCECchr15523136083'UTRnovel0.38
UCECchr1552370285Missense_Mutationrs373825708R984W0.43
UCECchr15523119623'UTRnovel0.37
UCECchr1552351481Missense_Mutationrs746171056R1208C0.36
UCSchr1552425868SilentnovelI139I0.36

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.20.079424
CESCDEL0.18640.00049652
KICHAMP0.25760.21756
KIRPDEL0.10070.2062
PAADDEL0.11410.13216
READDEL0.43640.025797

Survival Analysis
CancerP-value Q-value
KIRC0.0052

Kaplan-Meier Survival Analysis

STAD0.0017

Kaplan-Meier Survival Analysis

MESO0.012

Kaplan-Meier Survival Analysis

PAAD0.019

Kaplan-Meier Survival Analysis

PCPG0.036

Kaplan-Meier Survival Analysis

BLCA0.0036

Kaplan-Meier Survival Analysis

LGG0.00012

Kaplan-Meier Survival Analysis

THCA0.043

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000197535 (Gene tree)
Gene ID
4644
Gene Symbol
MYO5A
Alias
MYO5|GS1|MYR12|MYH12
Full Name
myosin VA
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
221,768 bases
Position
chr15:52,307,283-52,529,050
Accession
7602
RBP type
non-canonical RBP
Summary
This gene is one of three myosin V heavy-chain genes, belonging to the myosin gene superfamily. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1), Griscelli syndrome type-3 (GS3) and neuroectodermal melanolysosomal disease, or Elejalde disease. Multiple alternatively spliced transcript variants encoding different isoforms have been reported, but the full-length nature of some variants has not been determined. [provided by RefSeq, Dec 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23176491Roles for myosin Va in RNA transport and turnover.Biochem Soc Trans2012 Dec 1McCaffrey MWdoi: 10.1042/BST20120172.
17141617Myosin-Va facilitates the accumulation of mRNA/protein complex in dendritic spines.Curr Biol2006 Dec 5Yoshimura A-
24637809Actin and myosin-dependent localization of mRNA to dendrites.PLoS One2014 Mar 17Balasanyan Vdoi: 10.1371/journal.pone.0092349
24272908Myosin Va associates with mRNA in ribonucleoprotein particles present in myelinated peripheral axons and in the central nervous system.Dev Neurobiol2014 MarCalliari Adoi: 10.1002/dneu.22155
28566250Local Somatodendritic Translation and Hyperphosphorylation of Tau Protein Triggered by AMPA and NMDA Receptor Stimulation.EBioMedicine2017 JunKobayashi Sdoi: 10.1016/j.ebiom.2017.05.012
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000358212MYO5A-20212220-ENSP000003509451855 (aa)-F8W6H6
ENST00000399229MYO5A-2041758-ENSP00000382175585 (aa)-E7ERV5
ENST00000556196MYO5A-2103008-ENSP0000045117847 (aa)-G3V3C9
ENST00000568914MYO5A-212693-ENSP00000458016231 (aa)-O95317
ENST00000613858MYO5A-21312139-ENSP000004814201828 (aa)-A0A087WY00
ENST00000399233MYO5A-20612220XM_011521607ENSP000003821791855 (aa)XP_011519909F8WE88
ENST00000399231MYO5A-20512225XM_011521606ENSP000003821771855 (aa)XP_011519908Q9Y4I1
ENST00000465290MYO5A-207583--- (aa)--
ENST00000469611MYO5A-208500--- (aa)--
ENST00000399228MYO5A-203684-ENSP00000382174228 (aa)-Q9UES5
ENST00000553916MYO5A-2095989XM_005254397ENSP000004511091853 (aa)XP_005254454G3V394
ENST00000356338MYO5A-20111971XM_011521611ENSP000003486931828 (aa)XP_011519913Q9Y4I1
ENST00000561810MYO5A-211435--- (aa)--
Gene Model
Click here to download ENSG00000197535's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000197535Urinalysis7.73635665676305E-617903292
ENSG00000197535Hip2.59134757096585E-717903296
ENSG00000197535Heart Failure2E-623934736
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000197535rs22226561552480826AMetabolite levels (Pyroglutamine)23934736[0.07-0.17] unit decrease0.12EFO_0005408
ENSG00000197535rs7528641552339794?Number of common colds28928442[0.01-0.026] unit decrease0.0181EFO_0008417
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000197535's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000197535MYO5A10099.487ENSMUSG00000034593Myo5a10099.487Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000146microfilament motor activity10448864.NASFunction
GO:0001726ruffle9852149.IDAComponent
GO:0001750photoreceptor outer segment-IEAComponent
GO:0003723RNA binding22681889.HDAFunction
GO:0005509calcium ion binding-IEAFunction
GO:0005515protein binding11980908.IPIFunction
GO:0005516calmodulin binding-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm9852149.IDAComponent
GO:0005764lysosome24006491.IDAComponent
GO:0005769early endosome24006491.IDAComponent
GO:0005770late endosome24006491.IDAComponent
GO:0005777peroxisome24006491.IDAComponent
GO:0005783endoplasmic reticulum24006491.IDAComponent
GO:0005790smooth endoplasmic reticulum-IEAComponent
GO:0005794Golgi apparatus-IEAComponent
GO:0005829cytosol24006491.IDAComponent
GO:0005882intermediate filament-IEAComponent
GO:0005884actin filament24006491.IDAComponent
GO:0006887exocytosis-IEAProcess
GO:0006892post-Golgi vesicle-mediated transport24006491.IMPProcess
GO:0007268chemical synaptic transmission-IEAProcess
GO:0007601visual perception-IEAProcess
GO:0016020membrane19946888.HDAComponent
GO:0016020membrane24006491.IDAComponent
GO:0016192vesicle-mediated transport-ISSProcess
GO:0016461unconventional myosin complex-IEAComponent
GO:0017137Rab GTPase binding15357836.24006491.IPIFunction
GO:0030048actin filament-based movement10448864.NASProcess
GO:0030050vesicle transport along actin filament24006491.IMPProcess
GO:0030073insulin secretion-IEAProcess
GO:0030318melanocyte differentiation-IEAProcess
GO:0030426growth cone10391919.NASComponent
GO:0031585regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity-IEAProcess
GO:0031982vesicle24006491.IDAComponent
GO:0031987locomotion involved in locomotory behavior-IEAProcess
GO:0032252secretory granule localization-IEAProcess
GO:0032402melanosome transport11980908.NASProcess
GO:0032433filopodium tip24006491.IDAComponent
GO:0032593insulin-responsive compartment-ISSComponent
GO:0032869cellular response to insulin stimulus-ISSProcess
GO:0035371microtubule plus-end-IEAComponent
GO:0042438melanin biosynthetic process-IEAProcess
GO:0042470melanosome11980908.IDAComponent
GO:0042476odontogenesis-IEAProcess
GO:0042552myelination-IEAProcess
GO:0042641actomyosin-IEAComponent
GO:0042759long-chain fatty acid biosynthetic process-IEAProcess
GO:0042802identical protein binding-IEAFunction
GO:0043005neuron projection10391919.NASComponent
GO:0043025neuronal cell body-IEAComponent
GO:0048820hair follicle maturation-IEAProcess
GO:0050808synapse organization-IEAProcess
GO:0051015actin filament binding-IEAFunction
GO:0055037recycling endosome24006491.IDAComponent
GO:0070062extracellular exosome23533145.HDAComponent
GO:0072659protein localization to plasma membrane-ISSProcess
GO:0097718disordered domain specific binding-IEAFunction
GO:0098794postsynapse-IEAComponent
GO:0098978glutamatergic synapse-IEAComponent
GO:0099089establishment of endoplasmic reticulum localization to postsynapse-IEAProcess
GO:0099566regulation of postsynaptic cytosolic calcium ion concentration-IEAProcess
GO:1903358regulation of Golgi organization24006491.IMPProcess
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