EuRBPDB

Note: to get the extension of tumor abbreviations.

Cancer Related Information
Basic Information

Cancer associated literatures

PID	Title	Article	Time	Author	Doi
25985019	Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers.	Sci Rep	2015 May 18	Jang JS	doi: 10.1038/srep09755.
26997225	Staphylococcal Nuclease and Tudor Domain Containing 1 (SND1 Protein) Promotes Hepatocarcinogenesis by Inhibiting Monoglyceride Lipase (MGLL).	J Biol Chem	2016 May 13	Rajasekaran D	doi: 10.1074/jbc.M116.715359
25965817	MiR-361-5p inhibits colorectal and gastric cancer growth and metastasis by targeting staphylococcal nuclease domain containing-1.	Oncotarget	2015 Jul 10	Ma F	-
22396537	Multifunction protein staphylococcal nuclease domain containing 1 (SND1) promotes tumor angiogenesis in human hepatocellular carcinoma through novel pathway that involves nuclear factor ??B and miR-221.	J Biol Chem	2012 Apr 20	Santhekadur PK	doi: 10.1074/jbc.M111.321646
28428278	Oncogenic Role of SND1 in Development and Progression of Hepatocellular Carcinoma.	Cancer Res	2017 Jun 15	Jariwala N	doi: 10.1158/0008-5472.CAN-17-0298
17909068	SND1, a component of RNA-induced silencing complex, is up-regulated in human colon cancers and implicated in early stage colon carcinogenesis.	Cancer Res	2007 Oct 1	Tsuchiya N	-
19435788	Staphylococcal nuclease domain-containing protein 1 as a potential tissue marker for prostate cancer.	Am J Pathol	2009 Jun	Kuruma H	doi: 10.2353/ajpath.2009.080776
23995791	The transcriptional co-activator SND1 is a novel regulator of alternative splicing in prostate cancer cells.	Oncogene	2014 Jul 17	Cappellari M	doi: 10.1038/onc.2013.360
24155205	MicroRNA-127 is downregulated by Tudor-SN protein and contributes to metastasis and proliferation in breast cancer cell line MDA-MB-231.	Anat Rec (Hoboken)	2013 Dec	Zhao X	doi: 10.1002/ar.22823
23065261	Prognostic impact of Metadherin-SND1 interaction in colon cancer.	Mol Biol Rep	2012 Dec	Wang N	doi: 10.1007/s11033-012-1933-0
25405367	Role of the staphylococcal nuclease and tudor domain containing 1 in oncogenesis (review).	Int J Oncol	2015 Feb	Jariwala N	doi: 10.3892/ijo.2014.2766

Differential Expression

Expression in 33 cancers

Mutations

Cancer	Chr	Position	Mutation Type	dbSNP	Protein-change	Allele Freq	RBD
ACC	chr7	127652368	5'UTR	novel		0.43
ACC	chr7	127990967	Missense_Mutation	novel	A564S	0.31
BLCA	chr7	127990962	Missense_Mutation	NA	R562K	0.25
BLCA	chr7	127701300	Nonsense_Mutation	NA	S189*	0.07
BLCA	chr7	127887955	Missense_Mutation	novel	R466L	0.05
BLCA	chr7	128092142	3'UTR	novel		0.1
BLCA	chr7	128089624	Missense_Mutation	NA	G852W	0.07	TUDOR
BLCA	chr7	128081363	Missense_Mutation	novel	W658R	0.39
BLCA	chr7	128074678	Silent	NA	Q652Q	0.13
BLCA	chr7	128092020	Nonsense_Mutation	novel	R899*	0.31
BLCA	chr7	127904746	Splice_Site	NA	X485_splice	0.17
BLCA	chr7	127703306	Frame_Shift_Ins	novel	*G275Vfs61**	0.3
BLCA	chr7	127929224	Nonsense_Mutation	novel	Q522*	0.31
BLCA	chr7	127704941	Missense_Mutation	NA	E315Q	0.1
BLCA	chr7	127998098	Intron	novel		0.06
BLCA	chr7	127997700	Intron	novel		0.18
BRCA	chr7	127703312	Missense_Mutation	novel	I277V	0.06
BRCA	chr7	128084762	Missense_Mutation	NA	D717Y	0.33
BRCA	chr7	128091875	Silent	rs767963514	S887S	0.47
BRCA	chr7	128091876	Missense_Mutation	novel	A888S	0.09	TUDOR
BRCA	chr7	128081907	Intron	novel		0.08
BRCA	chr7	127703231	Frame_Shift_Del	NA	*F251Sfs39**	0.44
CESC	chr7	127686646	Missense_Mutation	NA	Q38E	0.35
CESC	chr7	128092137	3'UTR	novel		0.33
CESC	chr7	128085729	Silent	novel	E751E	0.33
CESC	chr7	127997839	Intron	rs752834511		0.37
CESC	chr7	128085774	Silent	rs747235161	Y766Y	0.25
CESC	chr7	128081451	Missense_Mutation	novel	V687G	0.48
CESC	chr7	127807495	Missense_Mutation	NA	K388N	0.36
CESC	chr7	127998098	Intron	novel		0.5
CESC	chr7	127686646	Missense_Mutation	NA	Q38E	0.23
CESC	chr7	127703318	Missense_Mutation	NA	H279Y	0.35
CHOL	chr7	128084724	Missense_Mutation	novel	G704D	0.33
COAD	chr7	127704854	Nonsense_Mutation	NA	E286*	0.46
COAD	chr7	128081885	Intron	NA		0.38
COAD	chr7	128091963	Splice_Site	novel	X890_splice	0.3
COAD	chr7	127929276	Missense_Mutation	rs143989011	R539H	0.11
COAD	chr7	127807503	Missense_Mutation	rs771628442	R391H	0.25
COAD	chr7	128074624	Silent	novel	A634A	0.19
COAD	chr7	128086960	Missense_Mutation	rs139075193	R776H	0.38
COAD	chr7	128092003	Nonsense_Mutation	novel	W893*	0.41	TUDOR
COAD	chr7	127694863	Missense_Mutation	novel	K88N	0.09
COAD	chr7	128084721	Splice_Region	novel		0.34
COAD	chr7	127703230	Missense_Mutation	novel	K249N	0.23
COAD	chr7	127929195	Frame_Shift_Del	NA	*A514Qfs156**	0.37
COAD	chr7	128084805	Missense_Mutation	rs552426263	R731H	0.24
COAD	chr7	127702490	Silent	NA	D215D	0.22
COAD	chr7	128081423	Nonsense_Mutation	novel	R678*	0.05
COAD	chr7	127844334	Missense_Mutation	rs200994299	T418M	0.12
COAD	chr7	127929237	Missense_Mutation	NA	R526H	0.23
COAD	chr7	128092177	3'UTR	novel		0.63
COAD	chr7	128089669	Missense_Mutation	novel	K867E	0.15	TUDOR
COAD	chr7	127844335	Silent	rs751946216	T418T	0.16
COAD	chr7	127997787	Intron	novel		0.07
COAD	chr7	128074659	Missense_Mutation	NA	A646V	0.29
COAD	chr7	127887899	Splice_Region	novel		0.22
COAD	chr7	127997673	Intron	novel		0.26
COAD	chr7	127703180	Missense_Mutation	NA	R233W	0.31
COAD	chr7	128081956	Intron	novel		0.05
COAD	chr7	128085715	Missense_Mutation	rs369890577	R747C	0.23
ESCA	chr7	127997812	Intron	novel		0.43
ESCA	chr7	128074537	Silent	novel	G605G	0.52
ESCA	chr7	128089507	Missense_Mutation	novel	A813T	0.18
GBM	chr7	127703232	Missense_Mutation	novel	F250S	0.06
GBM	chr7	128092115	3'UTR	rs368124781		0.26
GBM	chr7	127702442	Silent	rs765228444	I199I	0.19
GBM	chr7	127997725	Intron	rs146675053		0.27
GBM	chr7	127844417	Missense_Mutation	novel	G446R	0.29
GBM	chr7	128092068	3'UTR	rs777229708		0.27
GBM	chr7	127694893	Frame_Shift_Ins	novel	*I99Nfs44**	0.09
HNSC	chr7	127929319	Silent	novel	F553F	0.33
HNSC	chr7	127997857	Intron	novel		0.21
KICH	chr7	127652401	Frame_Shift_Del	novel	*S10Pfs81**	0.05
KICH	chr7	127652403	In_Frame_Del	novel	S11_G13del	0.04
KIRC	chr7	128081925	Intron	NA		0.16
KIRC	chr7	127701247	Silent	NA	H171H	0.12
KIRP	chr7	127997791	Intron	novel		0.31
KIRP	chr7	128085713	Missense_Mutation	novel	Y746C	0.12
LAML	chr7	128092071	3'UTR	novel		0.38
LGG	chr7	127990971	Missense_Mutation	NA	R565Q	0.32
LGG	chr7	127686747	Missense_Mutation	novel	K71N	0.18
LGG	chr7	127702506	Missense_Mutation	novel	V221F	0.08
LGG	chr7	127929326	Missense_Mutation	novel	A556T	0.51
LIHC	chr7	127698892	Missense_Mutation	NA	I123V	0.05
LIHC	chr7	127997950	Intron	NA		0.53
LIHC	chr7	128089646	Missense_Mutation	NA	G859E	0.5	TUDOR
LIHC	chr7	128081360	Missense_Mutation	NA	V657L	0.56
LIHC	chr7	127707575	Missense_Mutation	novel	R322S	0.15
LIHC	chr7	127652364	5'UTR	novel		0.45
LUAD	chr7	127698898	Nonsense_Mutation	NA	E125*	0.48
LUAD	chr7	127701232	Missense_Mutation	novel	E166D	0.11
LUAD	chr7	127701233	Missense_Mutation	novel	G167W	0.11
LUAD	chr7	127702466	Frame_Shift_Del	novel	*V208Sfs82**	0.22
LUAD	chr7	127997951	Intron	novel		0.62
LUAD	chr7	128089558	Missense_Mutation	NA	V830L	0.18
LUAD	chr7	128085781	Splice_Site	NA	X768_splice	0.27
LUAD	chr7	127703255	Nonsense_Mutation	NA	Q258*	0.32
LUAD	chr7	128087033	Missense_Mutation	novel	F800L	0.47
LUAD	chr7	127703178	Missense_Mutation	NA	R232L	0.22
LUAD	chr7	127702437	Missense_Mutation	NA	I198V	0.25
LUAD	chr7	128081906	Intron	novel		0.22
LUAD	chr7	127998174	Intron	novel		0.33
LUAD	chr7	127888002	Missense_Mutation	NA	A482T	0.31
LUAD	chr7	127702439	Missense_Mutation	NA	I198M	0.09
LUAD	chr7	127694932	Missense_Mutation	NA	M111I	0.2
LUAD	chr7	128089560	Silent	NA	V830V	0.25
LUAD	chr7	128091990	Splice_Site	novel	X890_splice	0.08
LUAD	chr7	128089624	Missense_Mutation	NA	G852W	0.17	TUDOR
LUAD	chr7	127998012	Intron	novel		0.22
LUAD	chr7	128089581	Frame_Shift_Del	novel	*H839Mfs18**	0.2
LUAD	chr7	128074555	Silent	novel	L611L	0.2
LUSC	chr7	127686664	Missense_Mutation	novel	P44S	0.39
LUSC	chr7	128084757	Missense_Mutation	novel	R715P	0.15
LUSC	chr7	127904818	Missense_Mutation	novel	G509V	0.27
LUSC	chr7	128085744	Silent	novel	P756P	0.2
LUSC	chr7	127686641	Missense_Mutation	novel	R36P	0.18
LUSC	chr7	127703214	Missense_Mutation	novel	F244S	0.2
LUSC	chr7	128087036	Silent	NA	I801I	0.16
LUSC	chr7	128092161	3'UTR	novel		0.23
LUSC	chr7	127887990	Missense_Mutation	NA	E478Q	0.1
LUSC	chr7	127997789	Intron	novel		0.04
LUSC	chr7	127698885	Silent	NA	G120G	0.38
LUSC	chr7	127929245	Missense_Mutation	NA	A529S	0.25
LUSC	chr7	128081495	Nonsense_Mutation	novel	E702*	0.14
LUSC	chr7	127904786	Silent	NA	E498E	0.1
LUSC	chr7	127686757	Missense_Mutation	novel	D75Y	0.09
MESO	chr7	127702433	Splice_Site	novel	X197_splice	0.24
OV	chr7	128081947	Intron	novel		0.38
OV	chr7	127707578	Silent	NA	L323L	0.37
OV	chr7	127844328	Missense_Mutation	rs554481013	N416S	0.09
OV	chr7	128091868	Missense_Mutation	novel	A885D	0.41	TUDOR
OV	chr7	127997662	Intron	novel		0.35
PAAD	chr7	128074579	Silent	rs138799870	S619S	0.12
PAAD	chr7	128081902	Intron	novel		0.13
PAAD	chr7	128086971	Missense_Mutation	rs775970650	L780I	0.14
PRAD	chr7	127997812	Intron	novel		0.16
PRAD	chr7	128074668	Missense_Mutation	NA	A649V	0.17
PRAD	chr7	127703306	Missense_Mutation	novel	G275C	0.18
READ	chr7	127904762	Silent	novel	G490G	0.27
READ	chr7	128089505	Missense_Mutation	novel	D812G	0.17
SARC	chr7	127686703	Nonsense_Mutation	novel	G57*	0.2
SARC	chr7	127807502	Missense_Mutation	NA	R391C	0.14
SARC	chr7	127707604	Missense_Mutation	novel	P332H	0.38
SARC	chr7	128081481	Missense_Mutation	novel	Y697S	0.4
SKCM	chr7	128074551	Missense_Mutation	novel	W610L	0.52
SKCM	chr7	128074552	Nonsense_Mutation	novel	W610*	0.52
SKCM	chr7	128092194	3'UTR	novel		0.33
SKCM	chr7	128092068	3'UTR	rs777229708		0.24
SKCM	chr7	127703244	Missense_Mutation	rs780923933	S254L	0.32
SKCM	chr7	128089486	Splice_Region	novel		0.23
SKCM	chr7	127701308	Nonsense_Mutation	NA	Q192*	0.92
SKCM	chr7	128089593	Silent	NA	T841T	0.23
SKCM	chr7	128074579	Silent	rs138799870	S619S	0.35
SKCM	chr7	127704862	Silent	NA	L288L	0.48
SKCM	chr7	127703303	Missense_Mutation	NA	L274V	0.21
SKCM	chr7	127997791	Intron	NA		0.36
SKCM	chr7	127929215	Missense_Mutation	NA	P519S	0.44
SKCM	chr7	127701162	Splice_Site	NA	X143_splice	0.3
SKCM	chr7	127703205	Missense_Mutation	NA	P241L	0.32
SKCM	chr7	127721374	Missense_Mutation	novel	P376S	0.22
SKCM	chr7	127686699	Silent	novel	R55R	0.28
SKCM	chr7	128092021	Missense_Mutation	novel	R899Q	0.46
SKCM	chr7	127997762	Intron	novel		0.2
SKCM	chr7	127997886	Intron	novel		0.46
SKCM	chr7	127997725	Intron	rs146675053		0.51
SKCM	chr7	128089525	Missense_Mutation	NA	R819W	0.25
SKCM	chr7	127998018	Intron	novel		0.2
SKCM	chr7	127703205	Missense_Mutation	NA	P241L	0.36
SKCM	chr7	128081958	Intron	novel		0.42
SKCM	chr7	127704914	Missense_Mutation	rs748087476	R306W	0.54
SKCM	chr7	127844351	Missense_Mutation	NA	P424S	0.41
STAD	chr7	127929259	Silent	rs138583964	Y533Y	0.14
STAD	chr7	128089654	Missense_Mutation	NA	M862V	0.16	TUDOR
STAD	chr7	127698928	Silent	NA	R135R	0.41
STAD	chr7	128074547	Missense_Mutation	rs752279583	G609S	0.21
STAD	chr7	128084776	Frame_Shift_Del	NA	*P723Lfs2**	0.35
STAD	chr7	128092176	3'UTR	novel		0.19
STAD	chr7	128084799	Frame_Shift_Del	NA	*R731Afs11**	0.21
STAD	chr7	128089575	Silent	rs201745504	A835A	0.08
STAD	chr7	127807505	Missense_Mutation	NA	P392S	0.35
STAD	chr7	128089617	Silent	rs771438370	G849G	0.27
STAD	chr7	128092005	Missense_Mutation	NA	R894C	0.29	TUDOR
STAD	chr7	128085759	Silent	NA	V761V	0.33
STAD	chr7	127998001	Intron	NA		0.12
STAD	chr7	127686653	Missense_Mutation	rs773076395	R40L	0.24
STAD	chr7	127721364	Silent	rs762720042	S372S	0.1
STAD	chr7	128091843	Missense_Mutation	NA	E877K	0.07	TUDOR
STAD	chr7	128081456	Missense_Mutation	novel	E689K	0.15
STAD	chr7	128089617	Silent	rs771438370	G849G	0.46
STAD	chr7	127807502	Missense_Mutation	NA	R391C	0.22
STAD	chr7	127694918	Nonsense_Mutation	novel	R107*	0.07
STAD	chr7	128084776	Frame_Shift_Del	NA	*P723Lfs2**	0.26
STAD	chr7	128081501	Missense_Mutation	rs148285818	G704S	0.15
STAD	chr7	127686743	Frame_Shift_Ins	novel	*D72Gfs4**	0.17
STAD	chr7	127721368	Nonsense_Mutation	NA	R374*	0.08
STAD	chr7	127807551	Frame_Shift_Ins	novel	*L410Afs14**	0.21
STAD	chr7	128085781	Splice_Site	NA	X768_splice	0.16
STAD	chr7	127702501	Missense_Mutation	NA	V219A	0.27
STAD	chr7	127997751	Intron	rs772710021		0.45
STAD	chr7	127721393	Missense_Mutation	NA	N382S	0.07
STAD	chr7	127997839	Intron	rs752834511		0.19
STAD	chr7	128092094	3'UTR	rs368045090		0.25
STAD	chr7	128092155	3'UTR	novel		0.27
STAD	chr7	128084776	Frame_Shift_Del	NA	*P723Lfs2**	0.24
STAD	chr7	127807501	Silent	NA	L390L	0.31
STAD	chr7	128092097	3'UTR	novel		0.08
THCA	chr7	127703230	In_Frame_Ins	novel	K249_F250insLRKVLNQS	0.04
THYM	chr7	128087028	Missense_Mutation	NA	A799T	0.33
UCEC	chr7	127997825	Intron	novel		0.51
UCEC	chr7	127997783	Intron	novel		0.31
UCEC	chr7	127652386	Missense_Mutation	NA	A5T	0.35
UCEC	chr7	127704877	Silent	rs763495501	F293F	0.32
UCEC	chr7	127844393	Missense_Mutation	novel	R438C	0.11
UCEC	chr7	127929227	Missense_Mutation	novel	R523W	0.09
UCEC	chr7	127997865	Intron	novel		0.28
UCEC	chr7	128092329	3'UTR	rs564076696		0.33
UCEC	chr7	127707591	Missense_Mutation	novel	D328N	0.33
UCEC	chr7	127997680	Intron	novel		0.09
UCEC	chr7	127990964	Nonsense_Mutation	novel	G563*	0.6
UCEC	chr7	127701256	Silent	NA	R174R	0.41
UCEC	chr7	127990952	Nonsense_Mutation	NA	E559*	0.45
UCEC	chr7	127997792	Intron	novel		0.45
UCEC	chr7	127998149	Intron	novel		0.23
UCEC	chr7	127694834	Missense_Mutation	novel	A79T	0.39
UCEC	chr7	127997673	Intron	novel		0.41
UCEC	chr7	128087015	Silent	rs764912119	T794T	0.34
UCEC	chr7	128092133	3'UTR	novel		0.54
UCEC	chr7	128081895	Intron	NA		0.49
UCEC	chr7	127721348	Missense_Mutation	novel	T367M	0.05
UCEC	chr7	127702508	Silent	NA	V221V	0.13
UCEC	chr7	128092328	3'UTR	novel		0.61
UCEC	chr7	127704920	Missense_Mutation	rs199541440	A308T	0.3
UCEC	chr7	127997649	Intron	novel		0.17
UCEC	chr7	127997651	Intron	novel		0.19
UCEC	chr7	127702457	Silent	rs201003399	D204D	0.46
UCEC	chr7	128084776	Frame_Shift_Del	NA	*P723Lfs2**	0.41
UCEC	chr7	128089617	Silent	rs771438370	G849G	0.26
UCEC	chr7	128089541	Missense_Mutation	NA	T824I	0.43
UCEC	chr7	128092194	3'UTR	novel		0.62
UCEC	chr7	128092069	3'UTR	rs746477798		0.29
UCEC	chr7	127844323	Splice_Site	novel	X415_splice	0.37
UCEC	chr7	127694846	Nonsense_Mutation	rs781032630	R83*	0.44
UCEC	chr7	128085710	Splice_Site	novel	X745_splice	0.3
UCEC	chr7	127997725	Intron	rs146675053		0.34
UCEC	chr7	128089557	Silent	rs372542486	N829N	0.32
UCEC	chr7	127694840	Missense_Mutation	novel	P81S	0.6
UCEC	chr7	127701169	Silent	novel	E145E	0.39
UCEC	chr7	127702443	Missense_Mutation	rs752379309	E200K	0.31
UCEC	chr7	127704898	Silent	rs368925468	S300S	0.44
UCEC	chr7	128074546	Silent	novel	I608I	0.41
UCEC	chr7	127703279	Missense_Mutation	novel	E266K	0.26
UCEC	chr7	128084805	Missense_Mutation	rs552426263	R731H	0.31
UCEC	chr7	127844377	Silent	novel	V432V	0.44
UCEC	chr7	128081423	Nonsense_Mutation	novel	R678*	0.36
UCEC	chr7	127721369	Missense_Mutation	rs751143196	R374Q	0.44
UCEC	chr7	127929211	Missense_Mutation	rs745974485	F517L	0.14
UCEC	chr7	127807551	Missense_Mutation	rs374865628	R407Q	0.32
UCEC	chr7	127652389	Nonsense_Mutation	novel	Q6*	0.28
UCEC	chr7	127698933	Missense_Mutation	novel	R136S	0.27
UCEC	chr7	127707601	Missense_Mutation	novel	A331V	0.28
UCEC	chr7	128074597	Silent	rs542659541	H625H	0.28
UCEC	chr7	127704850	Frame_Shift_Del	NA	*T285Sfs3**	0.39
UCEC	chr7	127694859	Missense_Mutation	novel	R87Q	0.4
UCEC	chr7	128084757	Missense_Mutation	rs375174369	R715H	0.16
UCEC	chr7	127807501	Silent	NA	L390L	0.35
UCEC	chr7	127929259	Silent	rs138583964	Y533Y	0.45
UCEC	chr7	127997694	Intron	rs762552465		0.32
UCEC	chr7	127998166	Intron	novel		0.17
UCEC	chr7	128089552	Missense_Mutation	NA	L828F	0.05
UCEC	chr7	127704898	Silent	rs368925468	S300S	0.37
UCEC	chr7	127997725	Intron	rs146675053		0.32
UCEC	chr7	127807541	Missense_Mutation	novel	E404K	0.45
UCEC	chr7	127704920	Missense_Mutation	rs199541440	A308T	0.15
UCEC	chr7	128086992	Missense_Mutation	rs774721142	R787W	0.5
UCEC	chr7	127694911	Silent	novel	P104P	0.49
UCEC	chr7	128087043	Missense_Mutation	novel	P804S	0.42
UCEC	chr7	127991051	Nonsense_Mutation	NA	R592*	0.07
UCEC	chr7	127698925	Missense_Mutation	novel	T134A	0.24
UCEC	chr7	127929316	Silent	novel	T552T	0.14
UCEC	chr7	127997927	Intron	novel		0.22
UCEC	chr7	128084756	Missense_Mutation	rs775537505	R715C	0.26
UCEC	chr7	128089610	Missense_Mutation	novel	S847F	0.34
UCEC	chr7	128092445	3'UTR	novel		0.33
UCEC	chr7	127652380	Missense_Mutation	novel	S3P	0.39
UCEC	chr7	127929259	Silent	rs138583964	Y533Y	0.06
UCEC	chr7	128091875	Silent	rs767963514	S887S	0.31
UCEC	chr7	127686673	Missense_Mutation	rs765335048	R47W	0.35
UCEC	chr7	127694949	Splice_Site	rs111802167	X117_splice	0.44
UCEC	chr7	127701165	Missense_Mutation	novel	P144H	0.64
UCEC	chr7	127844425	Splice_Site	novel	X448_splice	0.46
UCEC	chr7	127929186	Splice_Site	novel	X510_splice	0.44
UCEC	chr7	127997961	Intron	novel		0.45
UCEC	chr7	127694892	Missense_Mutation	novel	T98M	0.1
UCEC	chr7	127703219	Missense_Mutation	novel	A246T	0.07
UCEC	chr7	127929298	Missense_Mutation	novel	K546N	0.38
UCEC	chr7	127703264	Missense_Mutation	rs769312847	V261I	0.37
UCEC	chr7	127703310	Missense_Mutation	novel	T276N	0.41
UCEC	chr7	127707590	Missense_Mutation	NA	R327S	0.33
UCEC	chr7	128074499	Splice_Site	novel	X594_splice	0.25
UCEC	chr7	128085740	Missense_Mutation	novel	S755Y	0.18
UCEC	chr7	128092071	3'UTR	novel		0.17
UCEC	chr7	127694859	Missense_Mutation	novel	R87Q	0.88
UCEC	chr7	127698894	Silent	novel	I123I	0.24
UCEC	chr7	127704878	Missense_Mutation	rs764503974	A294T	0.37
UCEC	chr7	127887952	Missense_Mutation	NA	Y465C	0.32
UCEC	chr7	127990956	Missense_Mutation	novel	C560Y	0.09
UCEC	chr7	128087024	Silent	NA	A797A	0.3
UCEC	chr7	128085716	Missense_Mutation	NA	R747H	0.47
UCEC	chr7	127701280	Silent	novel	N182N	0.24
UCEC	chr7	128092557	3'UTR	novel		0.56
UCEC	chr7	127652438	Missense_Mutation	novel	G22D	0.35
UCEC	chr7	127702462	Missense_Mutation	novel	S206N	0.31
UCEC	chr7	127703246	Nonsense_Mutation	novel	R255*	0.4
UCEC	chr7	127997718	Intron	rs566408917		0.33
UCS	chr7	128081443	Silent	NA	P684P	0.49
UCS	chr7	128081423	Nonsense_Mutation	novel	R678*	0.4
UCS	chr7	128086945	Missense_Mutation	novel	V771A	0.09

Copy Number Variations (CNVs)

Cancer	Type	Freq	Q-value
ACC	DEL	0.0778	0.12261
CESC	DEL	0.1661	0.0016147
DLBC	DEL	0.1042	0.03486
KIRC	AMP	0.286	0.075418
LAML	DEL	0.1257	3.4101e-05
LGG	AMP	0.3138	1.5525e-07
LIHC	DEL	0.0838	0.24831
PAAD	DEL	0.0707	0.049388
TGCT	DEL	0.0533	0.11738
THCA	DEL	0	0.27619
UCEC	DEL	0.0965	0.0001859
UCS	DEL	0.3036	0.10142

Survival Analysis

Cancer	P-value	Q-value
THYM	0.024	Kaplan-Meier Survival Analysis
KIRC	0.0087	Kaplan-Meier Survival Analysis
SARC	0.011	Kaplan-Meier Survival Analysis
MESO	0.019	Kaplan-Meier Survival Analysis
UCS	0.035	Kaplan-Meier Survival Analysis
KIRP	0.019	Kaplan-Meier Survival Analysis
BLCA	0.00054	Kaplan-Meier Survival Analysis
KICH	0.013	Kaplan-Meier Survival Analysis
UCEC	0.00037	Kaplan-Meier Survival Analysis
GBM	0.0038	Kaplan-Meier Survival Analysis
LIHC	0.0098	Kaplan-Meier Survival Analysis

Drugs

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

PRI

Literatures

Expression

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000197157 (Gene tree)
Gene ID: 27044
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 440,491 bases
Position: chr7:127,652,119-128,092,609
Accession: 30646
RBP type: canonical RBP
Summary: This gene encodes a transcriptional co-activator that interacts with the acidic domain of Epstein-Barr virus nuclear antigen 2 (EBNA 2), a transcriptional activator that is required for B-lymphocyte transformation. Other transcription factors that interact with this protein are signal transducers and activators of transcription, STATs. This protein is also thought to be essential for normal cell growth. A similar protein in mammals and other organisms is a component of the RNA-induced silencing complex (RISC). [provided by RefSeq, Jul 2016]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000346762	TUDOR	PF00567.24	1.5e-26	1	1
ENSP00000419327	TUDOR	PF00567.24	1.4e-09	1	1
ENSP00000346762	SNase	PF00565.17	4.7e-69	1	5
ENSP00000346762	SNase	PF00565.17	4.7e-69	2	5
ENSP00000346762	SNase	PF00565.17	4.7e-69	3	5
ENSP00000346762	SNase	PF00565.17	4.7e-69	4	5
ENSP00000346762	SNase	PF00565.17	4.7e-69	5	5

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
27453046	Comprehensive Identification of RNA-Binding Domains in Human Cells	RIC & Hela	2016 Aug 18	Castello A	DOI: 10.1016/j.molcel.2016.06.029
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Protein-RNA interaction（RNA-Binding Site）

Click here to download all RNA binding sites

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
18453631	Structural and functional insights into human Tudor-SN, a key component linking RNA interference and editing.	Nucleic Acids Res	2008 Jun	Li CL	doi: 10.1093/nar/gkn236
20484005	The RNA binding protein Tudor-SN is essential for stress tolerance and stabilizes levels of stress-responsive mRNAs encoding secreted proteins in Arabidopsis.	Plant Cell	2010 May	Frei dit Frey N	doi: 10.1105/tpc.109.070680
28634830	The microRNA effector RNA-induced silencing complex in hidradenitis suppurativa: a significant dysregulation within active inflammatory lesions.	Arch Dermatol Res	2017 Sep	Hessam S	doi: 10.1007/s00403-017-1752-1
28758359	Aggregation of SND1 in Stress Granules is Associated with the Microtubule Cytoskeleton During Heat Shock Stimulus.	Anat Rec (Hoboken)	2017 Dec	Shao J	doi: 10.1002/ar.23642
29084903	Multifunctional RNA Binding Protein OsTudor-SN in Storage Protein mRNA Transport and Localization.	Plant Physiol	2017 Dec	Chou HL	doi: 10.1104/pp.17.01388
30642630	LincRNA TINCR facilitates excessive proliferation and inflammation in post-burn skin fibroblasts by directly binding with SND1 protein and inducing SND1-mediated TGF-β1 expression.	Biochem Biophys Res Commun	2019 Feb 19	Qin G	doi: 10.1016/j.bbrc.2019.01.013

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000485871	SND1-212	597	-	-	- (aa)	-	-
ENST00000470723	SND1-209	568	-	-	- (aa)	-	-
ENST00000354725	SND1-201	3476	XM_017011987	ENSP00000346762	910 (aa)	XP_016867476	Q7KZF4
ENST00000484767	SND1-211	460	-	-	- (aa)	-	-
ENST00000483503	SND1-210	603	-	-	- (aa)	-	-
ENST00000467238	SND1-205	716	-	-	- (aa)	-	-
ENST00000489417	SND1-214	1447	-	-	- (aa)	-	-
ENST00000463020	SND1-203	793	-	-	- (aa)	-	-
ENST00000468621	SND1-207	494	-	-	- (aa)	-	-
ENST00000492840	SND1-216	472	-	-	- (aa)	-	-
ENST00000461056	SND1-202	555	-	-	- (aa)	-	-
ENST00000492772	SND1-215	549	-	-	- (aa)	-	-
ENST00000468166	SND1-206	552	-	-	- (aa)	-	-
ENST00000470463	SND1-208	530	-	-	- (aa)	-	-
ENST00000465900	SND1-204	630	-	-	- (aa)	-	-
ENST00000486037	SND1-213	695	-	ENSP00000419327	231 (aa)	-	H7C597

Gene Model

Click here to download ENSG00000197157's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa05203	Viral carcinogenesis	KEGG

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000197157	Cholesterol, LDL	2.75727992015498E-7	17903299
ENSG00000197157	Mental Competency	4.6125900698314E-9	17903295
ENSG00000197157	Blood Sedimentation	7.201e-005	-
ENSG00000197157	Blood Sedimentation	7.231e-005	-
ENSG00000197157	Blood Sedimentation	7.231e-005	-
ENSG00000197157	Blood Sedimentation	7.231e-005	-
ENSG00000197157	Blood Sedimentation	7.231e-005	-
ENSG00000197157	Blood Sedimentation	5.617e-005	-
ENSG00000197157	Blood Sedimentation	7.231e-005	-
ENSG00000197157	Blood Sedimentation	5.732e-005	-
ENSG00000197157	Blood Pressure	5.9449917E-005	-
ENSG00000197157	Blood Pressure	6.5559270E-006	-
ENSG00000197157	Platelet Function Tests	8.7400000E-006	-
ENSG00000197157	Platelet Function Tests	2.9043870E-006	-
ENSG00000197157	Platelet Function Tests	1.5587884E-006	-
ENSG00000197157	Platelet Function Tests	2.9043870E-006	-
ENSG00000197157	Language Tests	5.2029000E-005	-
ENSG00000197157	Language Tests	1.6633000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	6.7621000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	6.2052000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	6.2052000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	6.7621000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	6.2724000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	4.4404000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	3.1778000E-005	-
ENSG00000197157	Child Development Disorders, Pervasive	2.8447000E-005	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000197157	rs77999825	7	127932924	A	Educational attainment (MTAG)	30038396	[0.024-0.038] unit increase	0.0313	EFO_0004784
ENSG00000197157	rs3735634	7	128032622	G	Self-reported math ability	30038396	[0.012-0.02] unit increase	0.0161	EFO_0004875
ENSG00000197157	rs117123883	7	128042066	A	Highest math class taken	30038396	[0.022-0.045] unit decrease	0.0337	EFO_0004875
ENSG00000197157	rs3735634	7	128032622	A	Self-reported math ability (MTAG)	30038396	[0.011-0.019] unit decrease	0.0151	EFO_0004875
ENSG00000197157	rs77999825	7	127932924	A	Highest math class taken (MTAG)	30038396	[0.029-0.047] unit increase	0.0381	EFO_0004875
ENSG00000197157	rs806166	7	127669880	T	Feeling worry	29500382	unit decrease	5.949	EFO_0009589
ENSG00000197157	rs3808072	7	127955520	T	Feeling worry	29500382	unit increase	6.332	EFO_0009589
ENSG00000197157	rs17151377	7	127817955	A	Feeling worry	29500382	unit increase	5.989	EFO_0009589
ENSG00000197157	rs77999825	7	127932924	A	Cognitive performance (MTAG)	30038396	[0.034-0.058] unit increase	0.0461	EFO_0008354
ENSG00000197157	rs73234901	7	127758194	A	General cognitive ability	29844566	z-score increase	6.336	EFO_0004337
ENSG00000197157	rs78066960	7	128076840	A	General cognitive ability	29844566	z-score increase	5.79	EFO_0004337
ENSG00000197157	rs17718395	7	127738598	?	Reaction time	29844566	[0.0046-0.0115] unit decrease	0.0080441	EFO_0008393
ENSG00000197157	rs1362267	7	127961201	?	Reaction time	29844566	[0.0057-0.0126] unit increase	0.009122	EFO_0008393
ENSG00000197157	rs4731392	7	128048098	A	Intelligence	29942086	z-score decrease	7.309	EFO_0004337
ENSG00000197157	rs3808093	7	127732371	A	Intelligence	29942086	z-score decrease	6.251	EFO_0004337
ENSG00000197157	rs3757771	7	127898506	T	Intelligence	29942086	z-score decrease	5.755	EFO_0004337
ENSG00000197157	rs12536253	7	127955024	C	Intelligence	29942086	z-score increase	5.928	EFO_0004337
ENSG00000197157	rs77999825	7	127932924	A	Educational attainment (years of education)	30038396	[0.022-0.037] unit increase	0.0294	EFO_0004784
ENSG00000197157	rs75278839	7	127934343	T	Educational attainment (years of education)	30038396	[0.021-0.037] unit increase	0.0291	EFO_0004784
ENSG00000197157	rs79520962	7	128031458	A	Eudaimonic well-being	30279531	[NR] z score decrease	6.015	EFO_0007869
ENSG00000197157	rs6467145	7	127742211	A	Number of sexual partners	30643258	[0.011-0.02] unit decrease	0.015750142	EFO_0007877
ENSG00000197157	rs13246286	7	127900324	?	Systolic blood pressure	30595370			EFO_0006335
ENSG00000197157	rs720300	7	127967421	A	Adventurousness	30643258	[0.013-0.025] unit decrease	0.019167446	EFO_0008579
ENSG00000197157	rs3808072	7	127955520	T	Adventurousness	30643258	[0.0088-0.0175] unit decrease	0.01315797	EFO_0008579
ENSG00000197157	rs712707	7	127682560	T	General risk tolerance (MTAG)	30643258	[0.008-0.013] unit decrease	0.0105	EFO_0008579
ENSG00000197157	rs720300	7	127967421	A	General risk tolerance (MTAG)	30643258	[0.0091-0.0161] unit decrease	0.0126	EFO_0008579

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000197157's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000197157	SND1	100	83.662	ENSAPOG00000017599	snd1	99	84.538	Acanthochromis_polyacanthus
ENSG00000197157	SND1	100	98.575	ENSAMEG00000004664	SND1	94	98.575	Ailuropoda_melanoleuca
ENSG00000197157	SND1	98	81.971	ENSACIG00000003551	snd1	99	81.849	Amphilophus_citrinellus
ENSG00000197157	SND1	100	83.443	ENSAOCG00000014166	snd1	99	84.316	Amphiprion_ocellaris
ENSG00000197157	SND1	100	83.443	ENSAPEG00000007067	snd1	99	84.316	Amphiprion_percula
ENSG00000197157	SND1	98	82.793	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSG00000197157	SND1	100	99.121	ENSANAG00000034463	SND1	100	99.121	Aotus_nancymaae
ENSG00000197157	SND1	99	82.967	ENSACLG00000022897	snd1	99	83.964	Astatotilapia_calliptera
ENSG00000197157	SND1	99	84.158	ENSAMXG00000016318	snd1	98	84.744	Astyanax_mexicanus
ENSG00000197157	SND1	100	98.681	ENSBTAG00000010692	SND1	100	98.681	Bos_taurus
ENSG00000197157	SND1	93	58.784	WBGene00006626	tsn-1	98	47.149	Caenorhabditis_elegans
ENSG00000197157	SND1	100	98.901	ENSCJAG00000017668	SND1	100	98.901	Callithrix_jacchus
ENSG00000197157	SND1	100	99.011	ENSCAFG00000001700	SND1	100	99.011	Canis_familiaris
ENSG00000197157	SND1	100	99.011	ENSCAFG00020021639	SND1	100	99.011	Canis_lupus_dingo
ENSG00000197157	SND1	100	99.011	ENSCHIG00000023390	SND1	100	99.011	Capra_hircus
ENSG00000197157	SND1	73	99.472	ENSTSYG00000004979	SND1	96	99.472	Carlito_syrichta
ENSG00000197157	SND1	99	84.556	ENSCAPG00000010677	SND1	98	84.598	Cavia_aperea
ENSG00000197157	SND1	100	97.912	ENSCPOG00000006251	SND1	100	97.912	Cavia_porcellus
ENSG00000197157	SND1	100	99.231	ENSCCAG00000036847	SND1	100	99.231	Cebus_capucinus
ENSG00000197157	SND1	100	99.560	ENSCATG00000035214	SND1	100	99.560	Cercocebus_atys
ENSG00000197157	SND1	100	98.022	ENSCLAG00000011796	SND1	100	98.022	Chinchilla_lanigera
ENSG00000197157	SND1	100	99.560	ENSCSAG00000010182	SND1	100	99.560	Chlorocebus_sabaeus
ENSG00000197157	SND1	80	95.122	ENSCHOG00000002218	SND1	86	88.235	Choloepus_hoffmanni
ENSG00000197157	SND1	100	92.088	ENSCPBG00000018094	SND1	98	93.049	Chrysemys_picta_bellii
ENSG00000197157	SND1	98	56.921	ENSCING00000000524	-	98	56.921	Ciona_intestinalis
ENSG00000197157	SND1	99	58.086	ENSCSAVG00000008807	-	99	58.232	Ciona_savignyi
ENSG00000197157	SND1	100	99.560	ENSCANG00000035119	SND1	100	99.560	Colobus_angolensis_palliatus
ENSG00000197157	SND1	100	97.033	ENSCGRG00001022514	Snd1	100	97.033	Cricetulus_griseus_chok1gshd
ENSG00000197157	SND1	97	97.172	ENSCGRG00000012277	Snd1	99	97.172	Cricetulus_griseus_crigri
ENSG00000197157	SND1	98	84.340	ENSCSEG00000008661	snd1	98	84.340	Cynoglossus_semilaevis
ENSG00000197157	SND1	100	83.882	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSG00000197157	SND1	100	84.337	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSG00000197157	SND1	97	96.054	ENSDNOG00000006795	SND1	100	96.054	Dasypus_novemcinctus
ENSG00000197157	SND1	100	98.571	ENSDORG00000000336	Snd1	100	98.571	Dipodomys_ordii
ENSG00000197157	SND1	100	59.603	FBgn0035121	Tudor-SN	98	50.486	Drosophila_melanogaster
ENSG00000197157	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSG00000197157	SND1	61	73.759	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSG00000197157	SND1	100	97.408	ENSEASG00005008513	SND1	100	97.408	Equus_asinus_asinus
ENSG00000197157	SND1	100	99.011	ENSECAG00000011451	SND1	100	99.011	Equus_caballus
ENSG00000197157	SND1	100	97.887	ENSEEUG00000014737	SND1	100	86.593	Erinaceus_europaeus
ENSG00000197157	SND1	99	82.127	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSG00000197157	SND1	100	99.011	ENSFCAG00000008289	SND1	100	99.011	Felis_catus
ENSG00000197157	SND1	100	98.242	ENSFDAG00000015881	SND1	100	98.242	Fukomys_damarensis
ENSG00000197157	SND1	99	82.201	ENSFHEG00000004093	snd1	97	84.750	Fundulus_heteroclitus
ENSG00000197157	SND1	64	74.859	ENSGMOG00000018932	snd1	64	74.859	Gadus_morhua
ENSG00000197157	SND1	62	97.902	ENSGALG00000052684	-	50	93.583	Gallus_gallus
ENSG00000197157	SND1	100	84.101	ENSGAFG00000008421	snd1	99	85.118	Gambusia_affinis
ENSG00000197157	SND1	100	53.637	ENSGACG00000019793	snd1	98	54.093	Gasterosteus_aculeatus
ENSG00000197157	SND1	100	99.780	ENSGGOG00000009614	SND1	100	99.780	Gorilla_gorilla
ENSG00000197157	SND1	99	83.480	ENSHBUG00000019135	snd1	99	83.964	Haplochromis_burtoni
ENSG00000197157	SND1	100	97.912	ENSHGLG00000003618	SND1	100	97.912	Heterocephalus_glaber_female
ENSG00000197157	SND1	99	97.459	ENSHGLG00100012449	SND1	100	97.459	Heterocephalus_glaber_male
ENSG00000197157	SND1	100	82.566	ENSHCOG00000005266	snd1	98	83.781	Hippocampus_comes
ENSG00000197157	SND1	100	82.385	ENSIPUG00000013279	snd1	98	83.408	Ictalurus_punctatus
ENSG00000197157	SND1	100	98.571	ENSSTOG00000002140	SND1	100	98.571	Ictidomys_tridecemlineatus
ENSG00000197157	SND1	100	98.681	ENSJJAG00000009561	Snd1	100	98.681	Jaculus_jaculus
ENSG00000197157	SND1	100	83.882	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSG00000197157	SND1	100	84.899	ENSLBEG00000013563	snd1	99	83.537	Labrus_bergylta
ENSG00000197157	SND1	99	85.226	ENSLOCG00000015537	snd1	98	85.226	Lepisosteus_oculatus
ENSG00000197157	SND1	100	98.242	ENSLAFG00000009696	SND1	100	98.242	Loxodonta_africana
ENSG00000197157	SND1	100	99.560	ENSMFAG00000038114	SND1	100	99.560	Macaca_fascicularis
ENSG00000197157	SND1	100	99.560	ENSMMUG00000015432	SND1	100	99.560	Macaca_mulatta
ENSG00000197157	SND1	100	99.560	ENSMNEG00000039808	SND1	100	99.661	Macaca_nemestrina
ENSG00000197157	SND1	100	99.451	ENSMLEG00000029040	SND1	100	99.548	Mandrillus_leucophaeus
ENSG00000197157	SND1	99	83.682	ENSMAMG00000011739	snd1	98	84.375	Mastacembelus_armatus
ENSG00000197157	SND1	99	82.967	ENSMZEG00005005681	snd1	99	83.964	Maylandia_zebra
ENSG00000197157	SND1	100	99.121	ENSMICG00000000097	SND1	100	99.121	Microcebus_murinus
ENSG00000197157	SND1	100	97.912	ENSMOCG00000005040	Snd1	100	97.912	Microtus_ochrogaster
ENSG00000197157	SND1	100	83.224	ENSMMOG00000001795	snd1	99	84.093	Mola_mola
ENSG00000197157	SND1	99	95.652	ENSMODG00000015182	SND1	99	95.652	Monodelphis_domestica
ENSG00000197157	SND1	100	83.114	ENSMALG00000012071	snd1	98	83.929	Monopterus_albus
ENSG00000197157	SND1	100	97.582	MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	Mus_caroli
ENSG00000197157	SND1	100	97.363	ENSMUSG00000001424	Snd1	100	97.363	Mus_musculus
ENSG00000197157	SND1	100	97.582	MGP_PahariEiJ_G0021917	Snd1	100	98.314	Mus_pahari
ENSG00000197157	SND1	100	97.582	MGP_SPRETEiJ_G0029159	Snd1	100	97.582	Mus_spretus
ENSG00000197157	SND1	100	98.352	ENSMPUG00000006545	SND1	100	98.352	Mustela_putorius_furo
ENSG00000197157	SND1	100	98.621	ENSMLUG00000017130	SND1	99	97.207	Myotis_lucifugus
ENSG00000197157	SND1	100	97.912	ENSNGAG00000011186	Snd1	100	97.912	Nannospalax_galili
ENSG00000197157	SND1	99	82.857	ENSNBRG00000006681	snd1	99	83.853	Neolamprologus_brichardi
ENSG00000197157	SND1	100	99.670	ENSNLEG00000012263	SND1	100	99.887	Nomascus_leucogenys
ENSG00000197157	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSG00000197157	SND1	100	98.242	ENSODEG00000011502	SND1	100	98.242	Octodon_degus
ENSG00000197157	SND1	99	82.857	ENSONIG00000011481	snd1	96	83.853	Oreochromis_niloticus
ENSG00000197157	SND1	98	94.144	ENSOANG00000000817	SND1	99	93.534	Ornithorhynchus_anatinus
ENSG00000197157	SND1	100	97.363	ENSOCUG00000001620	SND1	100	97.363	Oryctolagus_cuniculus
ENSG00000197157	SND1	98	83.799	ENSORLG00000015201	snd1	98	83.799	Oryzias_latipes
ENSG00000197157	SND1	98	83.911	ENSORLG00020013991	snd1	98	83.911	Oryzias_latipes_hni
ENSG00000197157	SND1	98	83.911	ENSORLG00015012436	snd1	98	83.911	Oryzias_latipes_hsok
ENSG00000197157	SND1	100	83.004	ENSOMEG00000006406	snd1	98	84.228	Oryzias_melastigma
ENSG00000197157	SND1	100	99.013	ENSOGAG00000013356	SND1	94	99.013	Otolemur_garnettii
ENSG00000197157	SND1	100	97.297	ENSOARG00000002149	SND1	100	96.158	Ovis_aries
ENSG00000197157	SND1	100	99.890	ENSPPAG00000042947	SND1	100	99.890	Pan_paniscus
ENSG00000197157	SND1	100	99.011	ENSPPRG00000004494	SND1	100	99.011	Panthera_pardus
ENSG00000197157	SND1	100	98.901	ENSPTIG00000014214	SND1	100	98.901	Panthera_tigris_altaica
ENSG00000197157	SND1	100	99.890	ENSPTRG00000023911	SND1	100	99.890	Pan_troglodytes
ENSG00000197157	SND1	97	99.661	ENSPANG00000011997	SND1	99	99.661	Papio_anubis
ENSG00000197157	SND1	99	81.477	ENSPKIG00000023494	snd1	98	81.798	Paramormyrops_kingsleyae
ENSG00000197157	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSG00000197157	SND1	100	97.802	ENSPEMG00000010240	Snd1	100	97.802	Peromyscus_maniculatus_bairdii
ENSG00000197157	SND1	97	73.446	ENSPMAG00000007915	-	99	73.446	Petromyzon_marinus
ENSG00000197157	SND1	100	96.154	ENSPCIG00000011561	SND1	100	96.154	Phascolarctos_cinereus
ENSG00000197157	SND1	100	83.772	ENSPFOG00000001557	snd1	99	84.650	Poecilia_formosa
ENSG00000197157	SND1	100	83.772	ENSPLAG00000018459	snd1	96	84.650	Poecilia_latipinna
ENSG00000197157	SND1	100	84.211	ENSPMEG00000006803	snd1	99	85.095	Poecilia_mexicana
ENSG00000197157	SND1	100	83.882	ENSPREG00000002189	snd1	99	84.761	Poecilia_reticulata
ENSG00000197157	SND1	93	99.504	ENSPPYG00000017972	SND1	100	99.504	Pongo_abelii
ENSG00000197157	SND1	100	86.593	ENSPCAG00000011305	SND1	99	86.511	Procavia_capensis
ENSG00000197157	SND1	100	99.341	ENSPCOG00000026791	SND1	100	99.435	Propithecus_coquereli
ENSG00000197157	SND1	100	96.923	ENSPVAG00000013945	SND1	100	96.923	Pteropus_vampyrus
ENSG00000197157	SND1	99	82.967	ENSPNYG00000000932	snd1	99	83.964	Pundamilia_nyererei
ENSG00000197157	SND1	100	83.260	ENSPNAG00000001206	snd1	98	84.222	Pygocentrus_nattereri
ENSG00000197157	SND1	99	97.247	ENSRNOG00000031173	Snd1	99	97.247	Rattus_norvegicus
ENSG00000197157	SND1	73	99.624	ENSRBIG00000027782	-	93	99.810	Rhinopithecus_bieti
ENSG00000197157	SND1	100	99.560	ENSRROG00000033020	SND1	100	99.560	Rhinopithecus_roxellana
ENSG00000197157	SND1	100	99.121	ENSSBOG00000032461	SND1	100	99.121	Saimiri_boliviensis_boliviensis
ENSG00000197157	SND1	98	92.793	ENSSHAG00000015359	SND1	100	92.793	Sarcophilus_harrisii
ENSG00000197157	SND1	100	82.155	ENSSFOG00015001103	snd1	98	83.241	Scleropages_formosus
ENSG00000197157	SND1	98	83.781	ENSSMAG00000001932	snd1	93	83.519	Scophthalmus_maximus
ENSG00000197157	SND1	100	83.443	ENSSDUG00000002699	snd1	92	84.316	Seriola_dumerili
ENSG00000197157	SND1	100	76.206	ENSSLDG00000001950	snd1	98	76.974	Seriola_lalandi_dorsalis
ENSG00000197157	SND1	86	96.226	ENSSARG00000004877	SND1	92	96.226	Sorex_araneus
ENSG00000197157	SND1	73	87.826	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSG00000197157	SND1	76	84.602	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSG00000197157	SND1	100	98.681	ENSSSCG00000016590	SND1	100	98.681	Sus_scrofa
ENSG00000197157	SND1	99	83.040	ENSTRUG00000014067	snd1	98	83.557	Takifugu_rubripes
ENSG00000197157	SND1	100	83.114	ENSTNIG00000011019	snd1	95	87.219	Tetraodon_nigroviridis
ENSG00000197157	SND1	93	93.042	ENSTBEG00000003999	SND1	100	93.042	Tupaia_belangeri
ENSG00000197157	SND1	100	94.066	ENSTTRG00000006059	SND1	100	94.066	Tursiops_truncatus
ENSG00000197157	SND1	91	98.669	ENSUAMG00000005604	-	93	98.669	Ursus_americanus
ENSG00000197157	SND1	71	90.130	ENSUAMG00000002820	-	86	90.054	Ursus_americanus
ENSG00000197157	SND1	100	98.791	ENSUMAG00000005960	SND1	100	98.791	Ursus_maritimus
ENSG00000197157	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSG00000197157	SND1	100	98.791	ENSVVUG00000007226	SND1	100	98.791	Vulpes_vulpes
ENSG00000197157	SND1	97	84.633	ENSXETG00000023043	snd1	100	85.566	Xenopus_tropicalis
ENSG00000197157	SND1	92	81.710	ENSXCOG00000013629	snd1	99	81.710	Xiphophorus_couchianus
ENSG00000197157	SND1	100	84.101	ENSXMAG00000011469	snd1	99	84.983	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001649	osteoblast differentiation	16210410.	HDA	Process
GO:0003712	transcription coregulator activity	7651391.	TAS	Function
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	18453631.	IDA	Function
GO:0004518	nuclease activity	21873635.	IBA	Function
GO:0004519	endonuclease activity	18453631.	IDA	Function
GO:0004521	endoribonuclease activity	28546213.	IDA	Function
GO:0005515	protein binding	20643132.20937909.24882364.24981741.28546213.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0010564	regulation of cell cycle process	28546213.	IMP	Process
GO:0010587	miRNA catabolic process	28546213.	IDA	Process
GO:0016020	membrane	16210410.	HDA	Component
GO:0016032	viral process	-	IEA	Process
GO:0016442	RISC complex	-	IEA	Component
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0042470	melanosome	-	IEA	Component
GO:0045296	cadherin binding	25468996.	HDA	Function
GO:0070062	extracellular exosome	20458337.	HDA	Component
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process
GO:0097433	dense body	-	IEA	Component
GO:1903506	regulation of nucleic acid-templated transcription	-	IEA	Process
GO:1905172	RISC complex binding	28546213.	IDA	Function

EuRBPDB

Note: to get the extension of tumor abbreviations.

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Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

PRI

Literatures

Expression

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

PPI

Orthologs

Gene Ontology

Note: Click here to get the extension of tumor abbreviations.

Select Dataset :

Input Drug :

Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Note: to get the extension of tumor abbreviations.