EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr9133020633RNAnovel0.62
BLCAchr9133020560RNANA0.26
COADchr9133020591RNAnovel0.5
COADchr9133020545RNAnovel0.39
LUADchr9133020447RNANA0.25
LUADchr9133020715RNAnovel0.8
OVchr9133020596RNAnovel0.5
PAADchr9133020515RNAnovel0.07
PRADchr9133020447RNANA0.1
SKCMchr9133020558RNAnovel0.17
SKCMchr9133020559RNAnovel0.16
UCECchr9133020764RNAnovel0.29
UCECchr9133020581RNAnovel0.13
UCECchr9133020705RNAnovel0.33
UCECchr9133020664RNAnovel0.35
UCECchr9133020710RNAnovel0.63
UCECchr9133020454RNAnovel0.37
UVMchr9133020465RNAnovel0.16

Copy Number Variations (CNVs)
CancerTypeFreq Q-value

Survival Analysis
CancerP-value Q-value
KIRC0.0058

Kaplan-Meier Survival Analysis

SARC0.0015

Kaplan-Meier Survival Analysis

ACC0.022

Kaplan-Meier Survival Analysis

HNSC0.0049

Kaplan-Meier Survival Analysis

SKCM0.0034

Kaplan-Meier Survival Analysis

LUSC0.05

Kaplan-Meier Survival Analysis

READ0.0072

Kaplan-Meier Survival Analysis

GBM0.016

Kaplan-Meier Survival Analysis

LIHC0.014

Kaplan-Meier Survival Analysis

LGG0.00019

Kaplan-Meier Survival Analysis

UVM0.035

Kaplan-Meier Survival Analysis

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
Description
Ensembl ID
ENSG00000196205 (Gene tree)
Gene ID
158078
Gene Symbol
EEF1A1P5
Alias
EEF1AL3
Full Name
eukaryotic translation elongation factor 1 alpha 1 pseudogene 5
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
1,741 bases
Position
chr9:133,019,435-133,021,175
Accession
3200
RBP type
non-canonical RBP
Summary
(Eukaryotic Translation Elongation Factor 1 Alpha 1 Pseudogene 5) is a Pseudogene. Among its related pathways are Viral mRNA Translation and Gene Expression. Gene Ontology (GO) annotations related to this gene include GTP binding and translation elongation factor activity.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000436459EEF1A1P5-2011389--- (aa)--
Gene Model
Click here to download ENSG00000196205's gene model file
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