EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1781890721Missense_MutationnovelL120V0.04RRM_1
BLCAchr1781889224Missense_Mutationrs777282962A166T0.5RRM_1
BLCAchr1781888299Missense_MutationnovelS241L0.42
BLCAchr1781888380Missense_MutationNAG214A0.35
BLCAchr1781889192SilentnovelV176V0.11
BLCAchr1781890705Nonsense_MutationnovelS125*0.1RRM_1
BLCAchr1781890691Nonsense_MutationnovelQ130*0.24RRM_1
BLCAchr1781888362Missense_Mutationrs752276341G220A0.24
BLCAchr1781890703Missense_MutationnovelD126H0.14RRM_1
BLCAchr1781888535Missense_MutationnovelR196Q0.21
BLCAchr1781889319Missense_MutationnovelA134D0.09RRM_1
BLCAchr1781890691Nonsense_MutationnovelQ130*0.15RRM_1
BLCAchr1781889251Missense_MutationnovelD157H0.21RRM_1
BRCAchr1781889223In_Frame_InsnovelD165dup0.63RRM_1
CESCchr17818878433'Flanknovel0.6
COADchr1781889194Missense_MutationnovelV176I0.31RRM_1
COADchr17818880713'UTRnovel0.63
COADchr1781889185Missense_MutationNAD179H0.28RRM_1
ESCAchr17818879253'UTRnovel0.09
HNSCchr1781888311Missense_MutationnovelA237V0.55
HNSCchr1781888146Splice_SitenovelX261_splice0.16
HNSCchr1781889306SilentnovelT138T0.76
KIRCchr1781888404Missense_MutationnovelG206V0.55
KIRCchr1781888531Missense_MutationNAR197S0.16
LGGchr17818880483'UTRnovel0.11
LIHCchr1781890719Silentrs759837859L120L0.5
LIHCchr1781888354SilentnovelR223R0.09
LUADchr1781889234SilentnovelR162R0.16
LUADchr1781888306SilentnovelR239R0.23
LUSCchr1781888324Missense_MutationNAR233G0.41
LUSCchr1781888366Missense_Mutationrs769045326G219S0.13
OVchr1781889258SilentnovelG154G0.04
PRADchr1781889251Missense_MutationnovelD157N0.45RRM_1
READchr1781888309Missense_MutationNAG238S0.79
SARCchr17818880793'UTRnovel0.47
SKCMchr17818881153'UTRrs7635595180.26
SKCMchr1781888304Silentrs765953765R239R0.27
SKCMchr1781889278Missense_MutationNAR148C0.4RRM_1
STADchr1781888245Missense_MutationNAA259G0.4
UCECchr1781889295Missense_MutationNAA142V0.48RRM_1
UCECchr1781888536Missense_Mutationrs781729860R196W0.19
UCECchr17818879313'UTRnovel0.5
UCECchr1781890726Missense_MutationnovelS118F0.38RRM_1
UCECchr1781889306SilentnovelT138T0.2
UCECchr17818880933'UTRnovel0.38
UCECchr1781889292Missense_MutationnovelA143V0.13RRM_1
UCECchr1781888295Missense_MutationnovelK242N0.29
UCECchr17818881133'UTRrs7598271540.34
UCECchr1781889223Missense_MutationNAA166V0.69RRM_1
UCECchr1781888256Silentrs749604246D255D0.48
UCECchr1781888547Missense_MutationnovelI192S0.48
UCECchr1781889248Missense_MutationNAV158M0.32RRM_1
UCECchr1781889216Missense_MutationNAK168N0.46RRM_1
UCECchr17818880183'UTRnovel0.5
UCECchr1781888389Missense_Mutationrs766163313R211H0.35
UCECchr17818881163'UTRnovel0.42
UCECchr1781890728SilentNAV117V0.17

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.38970.00012456
CESCDEL0.10510.00067839
KIRPAMP0.67010.14801
LGGAMP0.06821.52e-05
SARCAMP0.19840.032181
SKCMAMP0.28347.0388e-08
THCADEL0.0020.221
UVMAMP0.16250.054583

Survival Analysis
CancerP-value Q-value
THYM0.026

Kaplan-Meier Survival Analysis

KIRC0.029

Kaplan-Meier Survival Analysis

STAD0.024

Kaplan-Meier Survival Analysis

MESO0.021

Kaplan-Meier Survival Analysis

ACC0.00042

Kaplan-Meier Survival Analysis

ESCA0.014

Kaplan-Meier Survival Analysis

KIRP0.0012

Kaplan-Meier Survival Analysis

COAD0.017

Kaplan-Meier Survival Analysis

BLCA0.025

Kaplan-Meier Survival Analysis

CESC0.0077

Kaplan-Meier Survival Analysis

UCEC0.0036

Kaplan-Meier Survival Analysis

LIHC0.00012

Kaplan-Meier Survival Analysis

DLBC0.026

Kaplan-Meier Survival Analysis

LGG0.0086

Kaplan-Meier Survival Analysis

LUAD0.011

Kaplan-Meier Survival Analysis

UVM0.031

Kaplan-Meier Survival Analysis

OV0.00099

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000183684 (Gene tree)
Gene ID
10189
Gene Symbol
ALYREF
Alias
ALY|BEF|ALY/REF|REF|THOC4
Full Name
Aly/REF export factor
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
3,788 bases
Position
chr17:81,887,835-81,891,622
Accession
19071
RBP type
canonical RBP
Summary
The protein encoded by this gene is a heat stable, nuclear protein and functions as a molecular chaperone. It is thought to regulate dimerization, DNA binding, and transcriptional activity of basic region-leucine zipper (bZIP) proteins. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000421592RRM_1PF00076.224.9e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18364396Mutually exclusive interactions drive handover of mRNA from export adaptors to TAP.Proc Natl Acad Sci U S A2008 Apr 1Hautbergue GMdoi: 10.1073/pnas.0709167105
22893130TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export.Nat Commun2012Viphakone Ndoi: 10.1038/ncomms2005.
19609631Bortezomib induces the formation of nuclear poly(A) RNA granules enriched in Sam68 and PABPN1 in sensory ganglia neurons.Neurotox Res2010 FebCasafont Idoi: 10.1007/s12640-009-9086-1
20129943Arginine methylation of REF/ALY promotes efficient handover of mRNA to TAP/NXF1.Nucleic Acids Res2010 JunHung MLdoi: 10.1093/nar/gkq033
17609285Kaposi's sarcoma-associated herpesvirus ORF57 protein enhances mRNA accumulation independently of effects on nuclear RNA export.J Virol2007 SepNekorchuk M-
22761374Binding of cellular export factor REF/Aly by Kaposi's sarcoma-associated herpesvirus (KSHV) ORF57 protein is not required for efficient KSHV lytic replication.J Virol2012 SepLi DJdoi: 10.1128/JVI.01190-12
21329510Differential expression of THOC1 and ALY mRNP biogenesis/export factors in human cancers.BMC Cancer2011 Feb 17Dominguez-Sanchez MSdoi: 10.1186/1471-2407-11-77.
16769980Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription.Genome Res2006 JulSwinburne IA-
28990926IRAK2 directs stimulus-dependent nuclear export of inflammatory mRNAs.Elife2017 Oct 9Zhou Hdoi: 10.7554/eLife.29630.
12809490Structure of the nuclear factor ALY: insights into post-transcriptional regulatory and mRNA nuclear export processes.Biochemistry2003 Jun 24Perez-Alvarado GC-
12667464SR splicing factors serve as adapter proteins for TAP-dependent mRNA export.Mol Cell2003 MarHuang Y-
11158589REF proteins mediate the export of spliced and unspliced mRNAs from the nucleus.Proc Natl Acad Sci U S A2001 Jan 30Rodrigues JP-
15299117Relocalization of nuclear ALY proteins to the cytoplasm by the tomato bushy stunt virus P19 pathogenicity protein.Plant Physiol2004 AugUhrig JF-
19106628Nuclear phosphoinositide signaling regulates messenger RNA export.RNA Biol2009 Jan-MarOkada M-
16971461Zfp206 regulates ES cell gene expression and differentiation.Nucleic Acids Res2006Zhang W-
25662211Luzp4 defines a new mRNA export pathway in cancer cells.Nucleic Acids Res2015 Feb 27Viphakone Ndoi: 10.1093/nar/gkv070
24550725Competitive and cooperative interactions mediate RNA transfer from herpesvirus saimiri ORF57 to the mammalian export adaptor ALYREF.PLoS Pathog2014 Feb 13Tunnicliffe RBdoi: 10.1371/journal.ppat.1003907
26773052A short conserved motif in ALYREF directs cap- and EJC-dependent assembly of export complexes on spliced mRNAs.Nucleic Acids Res2016 Mar 18Gromadzka AMdoi: 10.1093/nar/gkw009
284180385-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m5C reader.Cell Res2017 MayYang Xdoi: 10.1038/cr.2017.55
29540591ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.Plant Physiol2018 MayPfaff Cdoi: 10.1104/pp.18.00173
29728564Nuclear egress of TDP-43 and FUS occurs independently of Exportin-1/CRM1.Sci Rep2018 May 4Ederle Hdoi: 10.1038/s41598-018-25007-5.
29941967Accumulation of poly(A) RNA in nuclear granules enriched in Sam68 in motor neurons from the SMNdelta7 mouse model of SMA.Sci Rep2018 Jun 25Narcis JOdoi: 10.1038/s41598-018-27821-3.
30858280ALYREF links 3'-end processing to nuclear export of non-polyadenylated mRNAs.EMBO J2019 May 2Fan Jdoi: 10.15252/embj.201899910
21402597Cellular cap-binding proteins associate with influenza virus mRNAs.J Gen Virol2011 JulBier Kdoi: 10.1099/vir.0.029231-0
18255312Nuclear compartmentalization and dynamics of the poly(A)-binding protein nuclear 1 (PABPN1) inclusions in supraoptic neurons under physiological and osmotic stress conditions.Mol Cell Neurosci2008 MarVillagra NTdoi: 10.1016/j.mcn.2007.12.012
17984224ATP-dependent recruitment of export factor Aly/REF onto intronless mRNAs by RNA helicase UAP56.Mol Cell Biol2008 JanTaniguchi I-
24073193Highly pathogenic avian influenza virus nucleoprotein interacts with TREX complex adaptor protein Aly/REF.PLoS One2013 Sep 20Balasubramaniam VRdoi: 10.1371/journal.pone.0072429
28801509Exosome cofactor hMTR4 competes with export adaptor ALYREF to ensure balanced nuclear RNA pools for degradation and export.EMBO J2017 Oct 2Fan Jdoi: 10.15252/embj.201696139
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000511412ALYREF-203533--- (aa)--
ENST00000505490ALYREF-2021088-ENSP00000421592264 (aa)-E9PB61
ENST00000504015ALYREF-201254--- (aa)--
ENST00000512673ALYREF-204441--- (aa)--
Gene Model
Click here to download ENSG00000183684's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
hsa03015mRNA surveillance pathwayKEGG
hsa03040SpliceosomeKEGG
hsa05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000183684's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000183684ALYREF9767.986ENSAPOG00000018455ALYREF10071.942Acanthochromis_polyacanthus
ENSG00000183684ALYREF7885.714ENSAMEG00000017463ALYREF7491.304Ailuropoda_melanoleuca
ENSG00000183684ALYREF9775.573ENSACAG00000010526ALYREF10073.664Anolis_carolinensis
ENSG00000183684ALYREF6797.175ENSANAG00000022638-7597.175Aotus_nancymaae
ENSG00000183684ALYREF10084.091ENSANAG00000028229-8084.848Aotus_nancymaae
ENSG00000183684ALYREF9798.054ENSBTAG00000008498ALYREF10098.054Bos_taurus
ENSG00000183684ALYREF10098.485ENSCJAG00000039942ALYREF10098.485Callithrix_jacchus
ENSG00000183684ALYREF9797.276ENSCAFG00000005877ALYREF10097.276Canis_familiaris
ENSG00000183684ALYREF9797.276ENSCAFG00020009815ALYREF10097.276Canis_lupus_dingo
ENSG00000183684ALYREF9797.287ENSCHIG00000017396ALYREF9797.287Capra_hircus
ENSG00000183684ALYREF8582.684ENSTSYG00000002272ALYREF6997.714Carlito_syrichta
ENSG00000183684ALYREF5195.522ENSCAPG00000014727-10095.522Cavia_aperea
ENSG00000183684ALYREF9796.887ENSCPOG00000013710ALYREF10096.887Cavia_porcellus
ENSG00000183684ALYREF10098.864ENSCCAG00000020578-10098.864Cebus_capucinus
ENSG00000183684ALYREF9776.265ENSCCAG00000030237-10073.152Cebus_capucinus
ENSG00000183684ALYREF10099.242ENSCATG00000033169ALYREF10099.242Cercocebus_atys
ENSG00000183684ALYREF9788.327ENSCLAG00000015026ALYREF10088.327Chinchilla_lanigera
ENSG00000183684ALYREF10099.242ENSCSAG00000002216ALYREF10099.242Chlorocebus_sabaeus
ENSG00000183684ALYREF6996.133ENSCANG00000034056ALYREF8989.266Colobus_angolensis_palliatus
ENSG00000183684ALYREF9794.163ENSCGRG00001018191-10092.218Cricetulus_griseus_chok1gshd
ENSG00000183684ALYREF7291.099ENSCGRG00000015871-9086.559Cricetulus_griseus_crigri
ENSG00000183684ALYREF7056.186ENSCSEG00000015438-9854.187Cynoglossus_semilaevis
ENSG00000183684ALYREF6795.506ENSDNOG00000002563ALYREF7595.506Dasypus_novemcinctus
ENSG00000183684ALYREF8582.667ENSDORG00000025849-7396.111Dipodomys_ordii
ENSG00000183684ALYREF6793.258ENSETEG00000016596ALYREF10092.697Echinops_telfairi
ENSG00000183684ALYREF10097.348ENSEASG00005005824ALYREF9897.348Equus_asinus_asinus
ENSG00000183684ALYREF10097.348ENSECAG00000018754ALYREF9897.348Equus_caballus
ENSG00000183684ALYREF6597.674ENSEEUG00000010164ALYREF10097.674Erinaceus_europaeus
ENSG00000183684ALYREF9997.710ENSFCAG00000022549ALYREF9997.710Felis_catus
ENSG00000183684ALYREF7887.379ENSFDAG00000001213ALYREF9385.922Fukomys_damarensis
ENSG00000183684ALYREF9783.784ENSGALG00000007237ALYREF10083.398Gallus_gallus
ENSG00000183684ALYREF9770.189ENSGACG00000013328ALYREF10072.180Gasterosteus_aculeatus
ENSG00000183684ALYREF9782.824ENSGAGG00000008536ALYREF10082.061Gopherus_agassizii
ENSG00000183684ALYREF10099.621ENSGGOG00000013935ALYREF10099.621Gorilla_gorilla
ENSG00000183684ALYREF9793.385ENSHGLG00000008293ALYREF10093.774Heterocephalus_glaber_female
ENSG00000183684ALYREF7880.617ENSHGLG00100006949ALYREF7793.370Heterocephalus_glaber_male
ENSG00000183684ALYREF9767.790ENSHCOG00000015046ALYREF10069.118Hippocampus_comes
ENSG00000183684ALYREF9793.774ENSJJAG00000004134-10093.774Jaculus_jaculus
ENSG00000183684ALYREF9770.455ENSLACG00000005694ALYREF10071.212Latimeria_chalumnae
ENSG00000183684ALYREF7194.149ENSLAFG00000003083ALYREF9892.935Loxodonta_africana
ENSG00000183684ALYREF10096.591ENSMFAG00000001394ALYREF10096.591Macaca_fascicularis
ENSG00000183684ALYREF10099.242ENSMMUG00000012884ALYREF10099.242Macaca_mulatta
ENSG00000183684ALYREF10099.242ENSMNEG00000043666ALYREF10099.242Macaca_nemestrina
ENSG00000183684ALYREF7087.895ENSMLEG00000043353ALYREF8289.385Mandrillus_leucophaeus
ENSG00000183684ALYREF9778.599ENSMAUG00000020552-10072.932Mesocricetus_auratus
ENSG00000183684ALYREF9997.338ENSMICG00000017403ALYREF9997.338Microcebus_murinus
ENSG00000183684ALYREF9783.462ENSMOCG00000016792-10081.439Microtus_ochrogaster
ENSG00000183684ALYREF9793.774ENSMODG00000003030ALYREF8493.774Monodelphis_domestica
ENSG00000183684ALYREF9769.091ENSMALG00000019408ALYREF10072.000Monopterus_albus
ENSG00000183684ALYREF9773.930MGP_CAROLIEiJ_G0014874Alyref210070.817Mus_caroli
ENSG00000183684ALYREF9796.109MGP_CAROLIEiJ_G0017529Alyref10096.109Mus_caroli
ENSG00000183684ALYREF9796.109ENSMUSG00000025134Alyref10096.109Mus_musculus
ENSG00000183684ALYREF9861.888ENSMUSG00000095022Gm2076510053.873Mus_musculus
ENSG00000183684ALYREF8965.106ENSMUSG00000112931Gm43036364.706Mus_musculus
ENSG00000183684ALYREF8965.106ENSMUSG00000096744Gm43076364.706Mus_musculus
ENSG00000183684ALYREF8963.983ENSMUSG00000094314Gm43016363.235Mus_musculus
ENSG00000183684ALYREF8965.254ENSMUSG00000091101Gm43026264.706Mus_musculus
ENSG00000183684ALYREF9774.031ENSMUSG00000060244Alyref210072.481Mus_musculus
ENSG00000183684ALYREF8963.983ENSMUSG00000096640Gm43126363.235Mus_musculus
ENSG00000183684ALYREF9762.105ENSMUSG00000097550Gm2130410053.873Mus_musculus
ENSG00000183684ALYREF8965.106ENSMUSG00000112856Gm43056364.706Mus_musculus
ENSG00000183684ALYREF9761.278ENSMUSG000000867274931428L18Rik10057.955Mus_musculus
ENSG00000183684ALYREF9760.902ENSMUSG00000117091AC153137.110057.197Mus_musculus
ENSG00000183684ALYREF9861.888ENSMUSG00000094144Gm2131210053.873Mus_musculus
ENSG00000183684ALYREF9861.888ENSMUSG00000097878Gm87649960.479Mus_musculus
ENSG00000183684ALYREF9861.888ENSMUSG00000097427Gm67639960.479Mus_musculus
ENSG00000183684ALYREF9861.034ENSMUSG00000090854Gm434010052.778Mus_musculus
ENSG00000183684ALYREF9762.105ENSMUSG00000091779Gm2129310053.873Mus_musculus
ENSG00000183684ALYREF7297.354MGP_PahariEiJ_G0018656-9997.354Mus_pahari
ENSG00000183684ALYREF9796.109MGP_PahariEiJ_G0018655-10096.109Mus_pahari
ENSG00000183684ALYREF8167.442MGP_PahariEiJ_G0027254-8465.700Mus_pahari
ENSG00000183684ALYREF8167.442MGP_PahariEiJ_G0027255-8265.700Mus_pahari
ENSG00000183684ALYREF6757.269MGP_SPRETEiJ_G0016590-5577.419Mus_spretus
ENSG00000183684ALYREF9773.643MGP_SPRETEiJ_G0015679Alyref210072.093Mus_spretus
ENSG00000183684ALYREF9796.109MGP_SPRETEiJ_G0018373Alyref10096.109Mus_spretus
ENSG00000183684ALYREF9562.948ENSMLUG00000026271-7961.753Myotis_lucifugus
ENSG00000183684ALYREF9562.302ENSMLUG00000027352-7761.508Myotis_lucifugus
ENSG00000183684ALYREF9752.632ENSMLUG00000023213-7252.941Myotis_lucifugus
ENSG00000183684ALYREF9562.055ENSMLUG00000024976-7959.289Myotis_lucifugus
ENSG00000183684ALYREF8082.243ENSMLUG00000009555-6692.135Myotis_lucifugus
ENSG00000183684ALYREF9559.375ENSMLUG00000022869-7161.836Myotis_lucifugus
ENSG00000183684ALYREF9569.444ENSMLUG00000027516-7866.667Myotis_lucifugus
ENSG00000183684ALYREF9561.961ENSMLUG00000025677-7760.784Myotis_lucifugus
ENSG00000183684ALYREF9560.714ENSMLUG00000024447-7660.317Myotis_lucifugus
ENSG00000183684ALYREF9563.953ENSMLUG00000002626-9865.116Myotis_lucifugus
ENSG00000183684ALYREF9557.692ENSMLUG00000024471-8252.490Myotis_lucifugus
ENSG00000183684ALYREF9560.784ENSMLUG00000030407-7759.608Myotis_lucifugus
ENSG00000183684ALYREF8258.447ENSMLUG00000028343-8564.045Myotis_lucifugus
ENSG00000183684ALYREF9555.814ENSMLUG00000015043-9852.124Myotis_lucifugus
ENSG00000183684ALYREF10099.621ENSNLEG00000010313ALYREF10099.621Nomascus_leucogenys
ENSG00000183684ALYREF8073.810ENSMEUG00000002210ALYREF9273.810Notamacropus_eugenii
ENSG00000183684ALYREF5191.045ENSOPRG00000005551-5289.552Ochotona_princeps
ENSG00000183684ALYREF9796.154ENSODEG00000008359ALYREF10096.154Octodon_degus
ENSG00000183684ALYREF9768.727ENSORLG00000012331ALYREF10070.909Oryzias_latipes
ENSG00000183684ALYREF7589.394ENSOGAG00000012409ALYREF7693.889Otolemur_garnettii
ENSG00000183684ALYREF6797.191ENSOARG00000017932ALYREF6797.191Ovis_aries
ENSG00000183684ALYREF9997.710ENSPPRG00000010829ALYREF9997.710Panthera_pardus
ENSG00000183684ALYREF5597.241ENSPTIG00000006399ALYREF8197.241Panthera_tigris_altaica
ENSG00000183684ALYREF10099.621ENSPTRG00000009774ALYREF10099.621Pan_troglodytes
ENSG00000183684ALYREF10099.242ENSPANG00000019265ALYREF10099.242Papio_anubis
ENSG00000183684ALYREF5091.729ENSPSIG00000017541ALYREF9892.481Pelodiscus_sinensis
ENSG00000183684ALYREF10099.242ENSPPYG00000008749ALYREF10099.242Pongo_abelii
ENSG00000183684ALYREF9997.338ENSPCOG00000020874ALYREF9997.338Propithecus_coquereli
ENSG00000183684ALYREF9778.988ENSPVAG00000017866ALYREF10078.988Pteropus_vampyrus
ENSG00000183684ALYREF6598.256ENSRNOG00000036687Alyref9198.256Rattus_norvegicus
ENSG00000183684ALYREF6996.133ENSRBIG00000039651ALYREF7496.133Rhinopithecus_bieti
ENSG00000183684ALYREF8891.379ENSRROG00000045364ALYREF8397.156Rhinopithecus_roxellana
ENSG00000183684ALYREF7392.746ENSSHAG00000010459ALYREF9594.565Sarcophilus_harrisii
ENSG00000183684ALYREF9752.158ENSSDUG00000003992-10053.381Seriola_dumerili
ENSG00000183684ALYREF9753.091ENSSLDG00000005386-10053.957Seriola_lalandi_dorsalis
ENSG00000183684ALYREF9782.061ENSSPUG00000004600ALYREF10080.153Sphenodon_punctatus
ENSG00000183684ALYREF9768.100ENSSPAG00000011178ALYREF9769.892Stegastes_partitus
ENSG00000183684ALYREF9797.276ENSSSCG00000032655ALYREF10097.276Sus_scrofa
ENSG00000183684ALYREF5093.182ENSTGUG00000003513ALYREF10091.111Taeniopygia_guttata
ENSG00000183684ALYREF9769.118ENSTRUG00000008828ALYREF10067.897Takifugu_rubripes
ENSG00000183684ALYREF6795.506ENSTBEG00000005834ALYREF10095.506Tupaia_belangeri
ENSG00000183684ALYREF9796.109ENSTTRG00000012275ALYREF10096.109Tursiops_truncatus
ENSG00000183684ALYREF6783.616ENSUAMG00000016931ALYREF6681.921Ursus_americanus
ENSG00000183684ALYREF6783.051ENSUMAG00000016384ALYREF6581.356Ursus_maritimus
ENSG00000183684ALYREF9775.969ENSXETG00000005391alyref10074.517Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000018regulation of DNA recombination22144908.IMPProcess
GO:0000346transcription export complex15833825.15998806.IDAComponent
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0000784nuclear chromosome, telomeric region24270157.IDAComponent
GO:0001649osteoblast differentiation16210410.HDAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding11546874.11979277.14667819.15047853.17190602.17234882.18562279.19165146.23299939.29128334.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0005829cytosol-TASComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus17190602.25662211.IMPProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0016020membrane16210410.HDAComponent
GO:0016032viral process-IEAProcess
GO:0016607nuclear speck-IEAComponent
GO:0031124mRNA 3'-end processing-TASProcess
GO:0031297replication fork processing22144908.IMPProcess
GO:0032786positive regulation of DNA-templated transcription, elongation22144908.IMPProcess
GO:0035145exon-exon junction complex16314458.IDAComponent
GO:0046784viral mRNA export from host cell nucleus18974867.IDAProcess
GO:0070062extracellular exosome19056867.HDAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent
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