EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24160266Nuclear-encoded mitochondrial MTO1 and MRPL41 are regulated in an opposite epigenetic mode based on estrogen receptor status in breast cancer.BMC Cancer2013 Oct 27Kim TWdoi: 10.1186/1471-2407-13-502.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr9137552381Missense_MutationnovelI100M0.93MRP-L27
BLCAchr9137552393SilentnovelF104F0.27
BLCAchr9137552387SilentNAK102K0.4
BLCAchr9137552312SilentnovelL77L0.09
BLCAchr9137552471SilentNAL130L0.52
CESCchr9137552331In_Frame_InsnovelT84delinsRA0.14MRP-L27
CESCchr9137552465SilentnovelF128F0.35
COADchr9137552237Missense_Mutationrs376218719Q52H0.21MRP-L27
COADchr9137552330SilentNAE83E0.29
GBMchr9137552391Missense_MutationnovelF104I0.39MRP-L27
HNSCchr9137552356Missense_MutationnovelF92C0.34MRP-L27
HNSCchr9137552439Missense_MutationnovelE120Q0.33MRP-L27
LGGchr9137552130Nonsense_MutationnovelR17*0.24MRP-L27
LGGchr9137552344Frame_Shift_DelnovelA89Rfs*?0.2MRP-L27
LUSCchr9137552388Missense_MutationNAD103Y0.58MRP-L27
PRADchr9137552250Missense_Mutationrs773179110V57I0.35MRP-L27
READchr91375525283'UTRnovel0.24
SKCMchr9137552336SilentNAP85P0.23
SKCMchr9137552261Silentrs12834F60F0.3
STADchr9137552345SilentNAA88A0.62
THCAchr9137552442Missense_MutationNAP121S0.29MRP-L27
THCAchr9137552098Missense_MutationnovelA6V0.23
UCECchr9137552377Missense_MutationnovelA99V0.51MRP-L27
UCECchr9137552433Missense_MutationnovelG118C0.14MRP-L27
UCECchr9137552288Missense_MutationNAK69N0.22MRP-L27
UCECchr9137552250Missense_Mutationrs773179110V57I0.34MRP-L27

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BRCADEL0.19910.070727
LAMLDEL0.00520.24147
LGGAMP0.07410.21332
LIHCDEL0.24860.12467
SARCDEL0.21790.00032085
THCADEL0.04010.24038
THYMDEL0.00810.022012
UCSDEL0.60710.089783

Survival Analysis
CancerP-value Q-value
KIRC0.00015

Kaplan-Meier Survival Analysis

ACC0.00061

Kaplan-Meier Survival Analysis

UCS0.0011

Kaplan-Meier Survival Analysis

SKCM0.034

Kaplan-Meier Survival Analysis

PAAD0.0011

Kaplan-Meier Survival Analysis

BLCA0.037

Kaplan-Meier Survival Analysis

LAML0.0087

Kaplan-Meier Survival Analysis

KICH0.049

Kaplan-Meier Survival Analysis

UCEC0.0001

Kaplan-Meier Survival Analysis

GBM0.048

Kaplan-Meier Survival Analysis

UVM0.015

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000182154 (Gene tree)
Gene ID
64975
Gene Symbol
MRPL41
Alias
MRP-L27|RPML27|BMRP|PIG3|MRPL27
Full Name
mitochondrial ribosomal protein L41
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
1,357 bases
Position
chr9:137,551,199-137,552,555
Accession
14492
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the YmL27 ribosomal protein family. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000360498MRP-L27PF09809.97.5e-4611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000371443MRPL41-2011262-ENSP00000360498137 (aa)-Q8IXM3
Gene Model
Click here to download ENSG00000182154's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000182154's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000182154MRPL4110062.044ENSAPOG00000010852mrpl4110062.044Acanthochromis_polyacanthus
ENSG00000182154MRPL4110074.453ENSAMEG00000019969MRPL4110074.453Ailuropoda_melanoleuca
ENSG00000182154MRPL4110061.314ENSACIG00000010909mrpl4110061.314Amphilophus_citrinellus
ENSG00000182154MRPL4110062.774ENSAOCG00000005883mrpl4110062.774Amphiprion_ocellaris
ENSG00000182154MRPL416946.316ENSAOCG00000000215-7646.316Amphiprion_ocellaris
ENSG00000182154MRPL4110063.504ENSAPEG00000016952mrpl4110063.504Amphiprion_percula
ENSG00000182154MRPL4110055.474ENSAPEG00000004381-10055.474Amphiprion_percula
ENSG00000182154MRPL4110060.584ENSATEG00000011838mrpl4110060.584Anabas_testudineus
ENSG00000182154MRPL419963.235ENSAPLG00000005103MRPL4110063.235Anas_platyrhynchos
ENSG00000182154MRPL4110060.584ENSACLG00000006623mrpl4110060.584Astatotilapia_calliptera
ENSG00000182154MRPL4110059.854ENSAMXG00000025462mrpl4110059.854Astyanax_mexicanus
ENSG00000182154MRPL4110074.453ENSBTAG00000039138MRPL4110074.453Bos_taurus
ENSG00000182154MRPL4110094.891ENSCJAG00000013417MRPL4110094.891Callithrix_jacchus
ENSG00000182154MRPL4110072.993ENSCAFG00000019403MRPL4110072.993Canis_familiaris
ENSG00000182154MRPL4110072.993ENSCAFG00020003391MRPL4110072.993Canis_lupus_dingo
ENSG00000182154MRPL4110073.723ENSCHIG00000011407MRPL4110073.723Capra_hircus
ENSG00000182154MRPL4110075.912ENSCPOG00000032480MRPL4110075.912Cavia_porcellus
ENSG00000182154MRPL4110076.642ENSCLAG00000009556MRPL4110076.642Chinchilla_lanigera
ENSG00000182154MRPL4110095.620ENSCSAG00000019677MRPL4110095.620Chlorocebus_sabaeus
ENSG00000182154MRPL419170.968ENSCPBG00000017616MRPL417970.968Chrysemys_picta_bellii
ENSG00000182154MRPL419182.400ENSCANG00000036569MRPL419782.400Colobus_angolensis_palliatus
ENSG00000182154MRPL4110074.453ENSCGRG00001007509Mrpl4110074.453Cricetulus_griseus_chok1gshd
ENSG00000182154MRPL4110074.453ENSCGRG00000007976Mrpl4110074.453Cricetulus_griseus_crigri
ENSG00000182154MRPL4110057.664ENSCSEG00000016033mrpl419457.664Cynoglossus_semilaevis
ENSG00000182154MRPL4110062.044ENSCVAG00000017212mrpl4110062.044Cyprinodon_variegatus
ENSG00000182154MRPL4110059.854ENSDARG00000002264mrpl4110059.854Danio_rerio
ENSG00000182154MRPL4110079.562ENSDNOG00000014765MRPL4110079.562Dasypus_novemcinctus
ENSG00000182154MRPL4110075.912ENSDORG00000008357Mrpl4110075.912Dipodomys_ordii
ENSG00000182154MRPL418234.328FBgn0034001mRpL418034.328Drosophila_melanogaster
ENSG00000182154MRPL419951.111ENSEBUG00000015313mrpl419651.111Eptatretus_burgeri
ENSG00000182154MRPL4110069.343ENSEASG00005013949MRPL4110069.343Equus_asinus_asinus
ENSG00000182154MRPL4110069.343ENSECAG00000036878MRPL4110069.343Equus_caballus
ENSG00000182154MRPL4110074.453ENSEEUG00000001102MRPL4110074.453Erinaceus_europaeus
ENSG00000182154MRPL4110062.044ENSELUG00000004010mrpl4110062.044Esox_lucius
ENSG00000182154MRPL4110070.073ENSFCAG00000003590MRPL4110070.073Felis_catus
ENSG00000182154MRPL4110071.533ENSFALG00000014735MRPL4110071.533Ficedula_albicollis
ENSG00000182154MRPL4110072.993ENSFDAG00000001032MRPL4110072.993Fukomys_damarensis
ENSG00000182154MRPL4110059.124ENSFHEG00000022081mrpl4110059.124Fundulus_heteroclitus
ENSG00000182154MRPL4110056.204ENSGMOG00000020559mrpl4110056.204Gadus_morhua
ENSG00000182154MRPL4110072.263ENSGALG00000051567MRPL4110072.263Gallus_gallus
ENSG00000182154MRPL4110058.394ENSGAFG00000013953mrpl4110058.394Gambusia_affinis
ENSG00000182154MRPL4110057.664ENSGACG00000003642mrpl4110057.664Gasterosteus_aculeatus
ENSG00000182154MRPL4110067.883ENSGAGG00000008498MRPL4110067.883Gopherus_agassizii
ENSG00000182154MRPL41100100.000ENSGGOG00000006391MRPL41100100.000Gorilla_gorilla
ENSG00000182154MRPL4110060.584ENSHBUG00000014130mrpl4110060.584Haplochromis_burtoni
ENSG00000182154MRPL4110072.263ENSHGLG00000015326MRPL4110072.263Heterocephalus_glaber_female
ENSG00000182154MRPL4110072.263ENSHGLG00100009514MRPL4110072.263Heterocephalus_glaber_male
ENSG00000182154MRPL4110059.124ENSHCOG00000001577mrpl4110059.124Hippocampus_comes
ENSG00000182154MRPL4110061.314ENSIPUG00000006608mrpl4110061.314Ictalurus_punctatus
ENSG00000182154MRPL4110077.372ENSSTOG00000014737MRPL4110077.372Ictidomys_tridecemlineatus
ENSG00000182154MRPL4110076.642ENSJJAG00000012593Mrpl4110076.642Jaculus_jaculus
ENSG00000182154MRPL4110059.854ENSKMAG00000017776mrpl4110059.854Kryptolebias_marmoratus
ENSG00000182154MRPL4110059.124ENSLBEG00000001506mrpl417659.124Labrus_bergylta
ENSG00000182154MRPL419967.647ENSLACG00000015028MRPL419967.647Latimeria_chalumnae
ENSG00000182154MRPL4110066.423ENSLOCG00000017334mrpl4110066.423Lepisosteus_oculatus
ENSG00000182154MRPL4110094.161ENSMMUG00000039736MRPL4110094.161Macaca_mulatta
ENSG00000182154MRPL4110061.314ENSMAMG00000019315mrpl4110061.314Mastacembelus_armatus
ENSG00000182154MRPL4110060.584ENSMZEG00005004091mrpl4110060.584Maylandia_zebra
ENSG00000182154MRPL4110074.453ENSMAUG00000009177Mrpl4110074.453Mesocricetus_auratus
ENSG00000182154MRPL4110075.182ENSMOCG00000014971Mrpl4110075.182Microtus_ochrogaster
ENSG00000182154MRPL419952.206ENSMMOG00000009374mrpl419952.206Mola_mola
ENSG00000182154MRPL419953.676ENSMMOG00000019343MRPL419953.676Mola_mola
ENSG00000182154MRPL4110075.912ENSMODG00000023279MRPL4110075.912Monodelphis_domestica
ENSG00000182154MRPL419963.235ENSMALG00000002204mrpl419863.235Monopterus_albus
ENSG00000182154MRPL4110076.642MGP_CAROLIEiJ_G0023244Mrpl4110076.642Mus_caroli
ENSG00000182154MRPL4110075.912ENSMUSG00000036850Mrpl4110075.912Mus_musculus
ENSG00000182154MRPL4110075.912MGP_PahariEiJ_G0024702Mrpl4110075.912Mus_pahari
ENSG00000182154MRPL4110075.912MGP_SPRETEiJ_G0024161Mrpl4110075.912Mus_spretus
ENSG00000182154MRPL4110075.182ENSNGAG00000001236Mrpl4110075.182Nannospalax_galili
ENSG00000182154MRPL4110061.314ENSNBRG00000012717mrpl4110061.314Neolamprologus_brichardi
ENSG00000182154MRPL4110099.270ENSNLEG00000009233MRPL4110099.270Nomascus_leucogenys
ENSG00000182154MRPL4110072.464ENSOPRG00000013123MRPL4110072.464Ochotona_princeps
ENSG00000182154MRPL4110074.453ENSODEG00000020311-10074.453Octodon_degus
ENSG00000182154MRPL4110074.453ENSODEG00000019825-10074.453Octodon_degus
ENSG00000182154MRPL4110074.453ENSODEG00000019543-10074.453Octodon_degus
ENSG00000182154MRPL4110060.584ENSONIG00000021295mrpl4110060.584Oreochromis_niloticus
ENSG00000182154MRPL4110072.263ENSOCUG00000006334MRPL4110072.263Oryctolagus_cuniculus
ENSG00000182154MRPL4110059.854ENSORLG00020017144mrpl4110059.854Oryzias_latipes_hni
ENSG00000182154MRPL4110060.584ENSOMEG00000022717mrpl4110060.584Oryzias_melastigma
ENSG00000182154MRPL4110078.832ENSOGAG00000009417MRPL4110078.832Otolemur_garnettii
ENSG00000182154MRPL4110073.723ENSOARG00000018872-10073.723Ovis_aries
ENSG00000182154MRPL4110073.723ENSOARG00000004986-10073.723Ovis_aries
ENSG00000182154MRPL4110070.073ENSPPRG00000021741-10070.073Panthera_pardus
ENSG00000182154MRPL4110070.073ENSPPRG00000021777-10070.073Panthera_pardus
ENSG00000182154MRPL4110069.343ENSPTIG00000008756MRPL4110069.343Panthera_tigris_altaica
ENSG00000182154MRPL41100100.000ENSPTRG00000028973MRPL41100100.000Pan_troglodytes
ENSG00000182154MRPL4110062.044ENSPKIG00000024870mrpl4110062.044Paramormyrops_kingsleyae
ENSG00000182154MRPL4110059.124ENSPMGG00000023856mrpl4110059.124Periophthalmus_magnuspinnatus
ENSG00000182154MRPL4110072.993ENSPEMG00000009904Mrpl4110072.993Peromyscus_maniculatus_bairdii
ENSG00000182154MRPL4110077.372ENSPCIG00000006221MRPL419977.372Phascolarctos_cinereus
ENSG00000182154MRPL416155.952ENSPFOG00000020370mrpl418555.952Poecilia_formosa
ENSG00000182154MRPL4110061.314ENSPLAG00000019431mrpl4110061.314Poecilia_latipinna
ENSG00000182154MRPL4110061.314ENSPMEG00000019997mrpl4110061.314Poecilia_mexicana
ENSG00000182154MRPL4110059.124ENSPREG00000013847mrpl4110059.124Poecilia_reticulata
ENSG00000182154MRPL41100100.000ENSPPYG00000019833MRPL41100100.000Pongo_abelii
ENSG00000182154MRPL4110075.912ENSPCAG00000002732MRPL4110075.912Procavia_capensis
ENSG00000182154MRPL4110072.993ENSPVAG00000009348MRPL4110072.993Pteropus_vampyrus
ENSG00000182154MRPL4110060.584ENSPNYG00000019670mrpl4110060.584Pundamilia_nyererei
ENSG00000182154MRPL4110058.394ENSPNAG00000020354mrpl4110058.394Pygocentrus_nattereri
ENSG00000182154MRPL4110075.182ENSRNOG00000034128RGD156091710075.182Rattus_norvegicus
ENSG00000182154MRPL4110075.912ENSRNOG00000029875Mrpl4110075.912Rattus_norvegicus
ENSG00000182154MRPL4110096.350ENSRBIG00000025452MRPL4110096.350Rhinopithecus_bieti
ENSG00000182154MRPL4110096.350ENSRROG00000010444MRPL4110096.350Rhinopithecus_roxellana
ENSG00000182154MRPL4110075.912ENSSHAG00000010614MRPL4110075.912Sarcophilus_harrisii
ENSG00000182154MRPL4110063.504ENSSFOG00015017921mrpl4110063.504Scleropages_formosus
ENSG00000182154MRPL4110060.584ENSSMAG00000012745mrpl4110060.584Scophthalmus_maximus
ENSG00000182154MRPL4110061.314ENSSDUG00000006706mrpl4110061.314Seriola_dumerili
ENSG00000182154MRPL4110061.314ENSSLDG00000012096mrpl4110061.314Seriola_lalandi_dorsalis
ENSG00000182154MRPL4110063.504ENSSPAG00000021217mrpl416863.504Stegastes_partitus
ENSG00000182154MRPL4110075.912ENSSSCG00000033694MRPL4110075.912Sus_scrofa
ENSG00000182154MRPL4110070.803ENSTGUG00000002699MRPL4110070.803Taeniopygia_guttata
ENSG00000182154MRPL4110056.934ENSTRUG00000013645mrpl4110056.934Takifugu_rubripes
ENSG00000182154MRPL419958.824ENSTNIG00000003201mrpl419958.824Tetraodon_nigroviridis
ENSG00000182154MRPL416884.946ENSTBEG00000002233-10084.946Tupaia_belangeri
ENSG00000182154MRPL419166.935ENSTBEG00000017268-9866.935Tupaia_belangeri
ENSG00000182154MRPL4110075.182ENSTTRG00000010803MRPL4110075.182Tursiops_truncatus
ENSG00000182154MRPL4110075.182ENSUAMG00000012948MRPL4110075.182Ursus_americanus
ENSG00000182154MRPL4110074.453ENSUMAG00000023505MRPL4110074.453Ursus_maritimus
ENSG00000182154MRPL4110073.723ENSVVUG00000028867MRPL4110073.723Vulpes_vulpes
ENSG00000182154MRPL4110062.774ENSXETG00000003968mrpl4110062.774Xenopus_tropicalis
ENSG00000182154MRPL4110058.394ENSXMAG00000019576mrpl4110058.394Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome16024796.IDAFunction
GO:0005515protein binding18157088.IPIFunction
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005762mitochondrial large ribosomal subunit21873635.IBAComponent
GO:0005762mitochondrial large ribosomal subunit16024796.25278503.28892042.IDAComponent
GO:0006412translation21873635.IBAProcess
GO:0006412translation16024796.IDAProcess
GO:0006915apoptotic process-IEAProcess
GO:0007049cell cycle-IEAProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess
GO:1990904ribonucleoprotein complex16024796.IDAComponent
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