EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr14207480433'UTRnovel0.08
BRCAchr1420747895Missense_MutationnovelC105W0.11RnaseA
BRCAchr1420747672Missense_MutationNAR31K0.16RnaseA
BRCAchr1420747926Missense_MutationNAE116K0.16RnaseA
BRCAchr1420747946SilentNAY122Y0.15
BRCAchr1420747955Missense_MutationNAF125L0.13RnaseA
BRCAchr1420748007Missense_MutationnovelE143Q0.57
CESCchr1420747904Missense_MutationNAE108D0.15RnaseA
CESCchr14207480413'UTRnovel0.33
CESCchr1420747834Missense_MutationnovelG85E0.23RnaseA
COADchr1420747752Nonsense_MutationnovelE58*0.45RnaseA
COADchr14207482183'UTRnovel0.38
COADchr14207481673'UTRrs5446777590.09
COADchr14207482493'UTRnovel0.07
COADchr14207481683'UTRnovel0.04
DLBCchr14207483773'UTRnovel0.26
ESCAchr14207483783'UTRnovel0.58
ESCAchr14207481813'UTRnovel0.37
GBMchr1420747843Missense_Mutationrs199609364R88Q0.44RnaseA
GBMchr1420747984Missense_MutationNAN135T0.45
GBMchr1420747785Missense_MutationnovelI69L0.24RnaseA
HNSCchr1420747813Missense_Mutationrs149270684R78H0.14RnaseA
KIRPchr1420747812Frame_Shift_InsnovelR78Pfs*530.52RnaseA
KIRPchr1420747813Frame_Shift_InsnovelA79Mfs*520.54RnaseA
LIHCchr1420747827Missense_MutationnovelE83K0.27RnaseA
LIHCchr14207483453'UTRnovel0.37
LUADchr1420748024Nonstop_Mutationnovel*148Yext*890.07
LUADchr14207481213'UTRnovel0.28
LUADchr14207480543'UTRnovel0.3
PAADchr1420747701Missense_MutationnovelP41S0.17RnaseA
PRADchr1420747709SilentNAR43R0.33
READchr1420747843Missense_Mutationrs199609364R88Q0.26RnaseA
SARCchr14207481163'UTRnovel0.19
SKCMchr1420747843Missense_Mutationrs199609364R88Q0.5RnaseA
SKCMchr1420747928SilentNAE116E0.24
SKCMchr1420747776Missense_MutationNAH66Y0.18RnaseA
SKCMchr1420747964Silentrs759499952G128G0.1
SKCMchr1420747708Missense_Mutationrs544246375R43Q0.92RnaseA
SKCMchr1420747719Missense_MutationNAE47K0.4RnaseA
SKCMchr1420747719Missense_MutationNAE47K0.37RnaseA
SKCMchr1420747843Missense_Mutationrs199609364R88Q0.46RnaseA
SKCMchr14207481133'UTRnovel0.47
SKCMchr1420747890Missense_Mutationrs779330097E104K0.23RnaseA
SKCMchr1420747892SilentNAE104E0.27
STADchr1420747912Missense_MutationNAN111S0.37RnaseA
STADchr1420747876Missense_MutationNAA99V0.28RnaseA
UCECchr1420747984Missense_MutationNAN135T0.35
UCECchr1420747997SilentnovelL139L0.31
UCECchr14207482743'UTRnovel0.35
UCECchr1420747787SilentnovelI69I0.43
UCECchr14207482293'UTRnovel0.51
UCECchr1420747957Missense_MutationnovelH126L0.09RnaseA
UCECchr1420747958Frame_Shift_InsnovelC127Sfs*90.09RnaseA
UCECchr1420747958Frame_Shift_InsnovelC127Sfs*90.09RnaseA
UCECchr1420747957Missense_MutationnovelH126L0.09RnaseA
UCECchr1420747958Frame_Shift_InsnovelC127Sfs*90.09RnaseA
UCECchr1420747687Missense_MutationNAL36R0.41RnaseA
UCECchr1420747889SilentNAL103L0.39
UCECchr14207482003'UTRnovel0.38
UCECchr14207483163'UTRnovel0.35
UCECchr14207481673'UTRrs5446777590.18
UCECchr1420747815Missense_Mutationrs115258284A79T0.28RnaseA
UCECchr1420747968Missense_MutationnovelD130Y0.6
UCECchr14207482973'UTRnovel0.55
UCECchr14207481563'UTRnovel0.33
UCECchr1420747890Missense_Mutationrs779330097E104K0.27RnaseA
UCECchr14207482853'UTRrs1485919910.12
UCECchr1420747747Frame_Shift_DelnovelE58Rfs*30.18RnaseA
UCECchr1420747707Nonsense_Mutationrs138978934R43*0.2RnaseA
UCECchr1420747889SilentNAL103L0.35
UCECchr14207475805'UTRnovel0.55
UCECchr1420747771Missense_Mutationrs372769674S64N0.51RnaseA
UCECchr1420747588Missense_MutationnovelS3Y0.24
UCECchr14207482743'UTRnovel0.22
UCECchr14207481743'UTRnovel0.41

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.26670.056464
ACCDEL0.14440.19769
CHOLDEL0.36110.00040262
HNSCDEL0.10730.0025503
KIRPDEL0.16320.085174
LUSCDEL0.26150.0082553
PAADDEL0.09240.11332
READDEL0.36970.0043084

Survival Analysis
CancerP-value Q-value
BRCA0.018

Kaplan-Meier Survival Analysis

KIRP0.05

Kaplan-Meier Survival Analysis

KICH0.019

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000181562 (Gene tree)
Gene ID
10876
Gene Symbol
EDDM3A
Alias
HE3-ALPHA|FAM12A
Full Name
epididymal protein 3A
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
2,489 bases
Position
chr14:20,745,892-20,748,380
Accession
16978
RBP type
canonical RBP
Summary
Testicular sperm are morphologically differentiated but are not progressively motile nor able to fertilize an egg. Post-testicular maturation requires exposure of spermatozoa to the microenvironment of the epididymal lumen. Spermatozoa undergo extensive changes in the epididymis, including enzymatic modifications, loss of pre-existing components and addition of new glycoproteins from epididymal secretions. These modifying proteins and enzymes are synthesized by epithelial cells lining the epididymal duct and secreted apically into the lumen, where they come into contact with, and may be absorbed onto, the sperm membranes. The proteins encoded by the genes in this cluster are synthesized and secreted by epididymal epithelial cells. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000315098RnaseAPF00074.201.1e-0611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000326842EDDM3A-201927XM_017020934ENSP00000315098147 (aa)XP_016876423Q14507
Gene Model
Click here to download ENSG00000181562's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000181562Body Height9.0710000E-006-
ENSG00000181562Body Height7.7010000E-006-
ENSG00000181562Body Height5.7560000E-005-
ENSG00000181562Body Height4.9990000E-005-
ENSG00000181562Waist-Hip Ratio9.7210000E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000181562's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000181562EDDM3A9748.951ENSAMEG00000019906-9848.951Ailuropoda_melanoleuca
ENSG00000181562EDDM3A8849.231ENSBTAG00000055081-8848.800Bos_taurus
ENSG00000181562EDDM3A10086.395ENSCJAG00000040222EDDM3A10081.633Callithrix_jacchus
ENSG00000181562EDDM3A10070.068ENSCJAG00000038288EDDM3B10070.068Callithrix_jacchus
ENSG00000181562EDDM3A9748.951ENSCAFG00000005429-9848.951Canis_familiaris
ENSG00000181562EDDM3A9748.951ENSCAFG00020014402-8848.951Canis_lupus_dingo
ENSG00000181562EDDM3A10071.429ENSCATG00000022830EDDM3B10071.429Cercocebus_atys
ENSG00000181562EDDM3A10088.435ENSCSAG00000000348EDDM3A10088.435Chlorocebus_sabaeus
ENSG00000181562EDDM3A10071.429ENSCSAG00000000347EDDM3B10071.429Chlorocebus_sabaeus
ENSG00000181562EDDM3A9951.370ENSCHOG00000011384-9951.370Choloepus_hoffmanni
ENSG00000181562EDDM3A10070.068ENSCANG00000038286EDDM3B10070.068Colobus_angolensis_palliatus
ENSG00000181562EDDM3A9949.655ENSCGRG00001015047Eddm3b9550.345Cricetulus_griseus_chok1gshd
ENSG00000181562EDDM3A7551.818ENSDNOG00000041158-10051.818Dasypus_novemcinctus
ENSG00000181562EDDM3A9953.103ENSDORG00000023401Eddm3b9553.103Dipodomys_ordii
ENSG00000181562EDDM3A9643.972ENSETEG00000011239-7647.748Echinops_telfairi
ENSG00000181562EDDM3A10054.422ENSEASG00005002956-9054.422Equus_asinus_asinus
ENSG00000181562EDDM3A10054.422ENSECAG00000028388-9054.422Equus_caballus
ENSG00000181562EDDM3A9951.724ENSEEUG00000004950-9951.724Erinaceus_europaeus
ENSG00000181562EDDM3A9753.147ENSFCAG00000013772-9853.147Felis_catus
ENSG00000181562EDDM3A10098.639ENSGGOG00000016754EDDM3A10098.639Gorilla_gorilla
ENSG00000181562EDDM3A10070.068ENSGGOG00000011563EDDM3B10070.068Gorilla_gorilla
ENSG00000181562EDDM3A9944.828ENSLAFG00000023121-9944.828Loxodonta_africana
ENSG00000181562EDDM3A10048.299ENSLAFG00000001699-10048.299Loxodonta_africana
ENSG00000181562EDDM3A10070.068ENSMMUG00000001656EDDM3B10070.068Macaca_mulatta
ENSG00000181562EDDM3A10071.429ENSMLEG00000027313EDDM3B10071.429Mandrillus_leucophaeus
ENSG00000181562EDDM3A8439.837ENSMODG00000024492-8139.837Monodelphis_domestica
ENSG00000181562EDDM3A9950.345MGP_CAROLIEiJ_G0019218Eddm3b9550.345Mus_caroli
ENSG00000181562EDDM3A9950.345ENSMUSG00000072575Eddm3b9550.345Mus_musculus
ENSG00000181562EDDM3A9951.034MGP_SPRETEiJ_G0020111Eddm3b9551.034Mus_spretus
ENSG00000181562EDDM3A9750.350ENSMPUG00000018383-9850.350Mustela_putorius_furo
ENSG00000181562EDDM3A9953.425ENSMLUG00000014174-9653.425Myotis_lucifugus
ENSG00000181562EDDM3A10067.347ENSNLEG00000034277-10067.347Nomascus_leucogenys
ENSG00000181562EDDM3A10068.707ENSNLEG00000029047-10068.707Nomascus_leucogenys
ENSG00000181562EDDM3A8038.462ENSMEUG00000015068-8338.462Notamacropus_eugenii
ENSG00000181562EDDM3A9943.836ENSOPRG00000013117-8544.000Ochotona_princeps
ENSG00000181562EDDM3A9955.172ENSOCUG00000026377-9555.172Oryctolagus_cuniculus
ENSG00000181562EDDM3A10062.585ENSOGAG00000007767-10062.585Otolemur_garnettii
ENSG00000181562EDDM3A10051.020ENSOARG00000012827-10051.020Ovis_aries
ENSG00000181562EDDM3A9950.000ENSOARG00000012492-9650.000Ovis_aries
ENSG00000181562EDDM3A10069.388ENSPPAG00000033003EDDM3B10069.388Pan_paniscus
ENSG00000181562EDDM3A10098.639ENSPPAG00000000145EDDM3A10098.639Pan_paniscus
ENSG00000181562EDDM3A9751.748ENSPPRG00000020024-9851.748Panthera_pardus
ENSG00000181562EDDM3A9750.350ENSPTIG00000004120-9850.350Panthera_tigris_altaica
ENSG00000181562EDDM3A10098.639ENSPTRG00000006102EDDM3A10098.639Pan_troglodytes
ENSG00000181562EDDM3A10069.388ENSPTRG00000006103EDDM3B10069.388Pan_troglodytes
ENSG00000181562EDDM3A10071.429ENSPANG00000007680EDDM3B10071.429Papio_anubis
ENSG00000181562EDDM3A9946.207ENSPEMG00000014380Eddm3b9546.207Peromyscus_maniculatus_bairdii
ENSG00000181562EDDM3A8438.710ENSPCIG00000028761-7838.710Phascolarctos_cinereus
ENSG00000181562EDDM3A10097.279ENSPPYG00000005575EDDM3A10097.279Pongo_abelii
ENSG00000181562EDDM3A10069.388ENSPPYG00000005576EDDM3B10069.388Pongo_abelii
ENSG00000181562EDDM3A10053.741ENSPVAG00000013560-10053.741Pteropus_vampyrus
ENSG00000181562EDDM3A9750.350ENSRNOG00000052100Eddm3b8052.174Rattus_norvegicus
ENSG00000181562EDDM3A9750.350ENSRNOG00000054022LOC1036933848052.174Rattus_norvegicus
ENSG00000181562EDDM3A9750.350ENSRNOG00000030110LOC1036938238052.174Rattus_norvegicus
ENSG00000181562EDDM3A10071.429ENSRROG00000037495EDDM3B10071.429Rhinopithecus_roxellana
ENSG00000181562EDDM3A9940.411ENSSHAG00000006060-8041.803Sarcophilus_harrisii
ENSG00000181562EDDM3A9950.685ENSSSCG00000021866EDDM3B9950.685Sus_scrofa
ENSG00000181562EDDM3A10050.676ENSVPAG00000007373-10050.676Vicugna_pacos
ENSG00000181562EDDM3A9749.650ENSVVUG00000009061-8750.000Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005615extracellular space7514008.TASComponent
GO:0007321sperm displacement7514008.TASProcess
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