EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27669275Polymorphisms in GEMIN4 and AGO1 Genes Are Associated with the Risk of Lung Cancer: A Case-Control Study in Chinese Female Non-Smokers.Int J Environ Res Public Health2016 Sep 23Fang Xdoi: 10.3390/ijerph13100939.
22506892Genetic variants in the microRNA machinery gene GEMIN4 are associated with risk of prostate cancer: a case-control study of the Chinese Han population.DNA Cell Biol2012 JulLiu Jdoi: 10.1089/dna.2011.1600
14603441Two variants of the human hepatocellular carcinoma-associated HCAP1 gene and their effect on the growth of the human liver cancer cell line Hep3B.Genes Chromosomes Cancer2004 JanWan D-

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr17747581Silentrs151264305A154A0.09
BLCAchr17746250Missense_MutationnovelS598L0.76
BLCAchr17746222SilentNAL607L0.12
BLCAchr17747291Missense_Mutationrs757149711A251V0.75
BLCAchr17747277Missense_Mutationrs531320666D256N0.17
BRCAchr17746338Missense_MutationNAV569L0.29
BRCAchr17747595Missense_Mutationrs373337995V150I0.18
BRCAchr17745962Missense_Mutationrs753597687P694L0.29
BRCAchr17746533Missense_MutationNAR504C0.53
BRCAchr17746851Missense_MutationnovelA398S0.36
BRCAchr17747145Missense_MutationNAV300I0.11
CESCchr17747132Missense_Mutationrs201643179S304L0.1
CESCchr17745094Missense_MutationNAF983L0.23
CESCchr17747092Missense_MutationnovelC317W0.12
CESCchr17744916Missense_Mutationrs180894698G1043S0.42
CESCchr17746399Silentrs376526336S548S0.27
CESCchr17746996Silentrs201463934C349C0.31
CESCchr17744962Missense_MutationNAQ1027H0.31
CESCchr17747283Missense_MutationNAE254K0.21
CESCchr17745094SilentNAF983F0.5
CESCchr17746506Missense_MutationnovelE513K0.24
COADchr17747742In_Frame_DelNAV100del0.37
COADchr17745614Missense_MutationNAG810E0.23
COADchr17745279Missense_MutationnovelL922I0.42
COADchr17745176Missense_Mutationrs369029997A956V0.21
COADchr17746403Missense_MutationNAA547V0.24
COADchr17747629SilentNAH138H0.22
COADchr17747460Nonsense_MutationnovelE195*0.11
COADchr17745616Silentrs374917019Y809Y0.08
COADchr17747134SilentNAT303T0.22
COADchr177447883'UTRnovel0.43
COADchr17746398Missense_Mutationrs373624818V549M0.35
COADchr17746096Silentrs370625526D649D0.43
COADchr17747326Silentrs781267706A239A0.26
COADchr17746741Silentrs756295903S434S0.11
COADchr17747044Silentrs763028232A333A0.3
COADchr17747931Missense_Mutationrs558697152D38N0.35
COADchr17745885Missense_MutationNAC720R0.25
COADchr17747058Frame_Shift_DelNAE329Rfs*240.3
COADchr17746428Missense_MutationnovelE539K0.21
DLBCchr17745223SilentnovelV940V0.33
ESCAchr17747746Silentrs370552236S99S0.36
ESCAchr17746557Missense_MutationnovelN496H0.19
GBMchr17746021Missense_MutationNAF674L0.31
GBMchr17745500Missense_MutationnovelL848R0.32
HNSCchr17747583Missense_MutationnovelA154S0.5
HNSCchr17746299Missense_Mutationrs372394762L582V0.29
HNSCchr17746996Missense_MutationnovelC349W0.25
KIRCchr17746032Missense_MutationNAL671V0.33
KIRCchr17746148Missense_MutationNAM632K0.34
KIRCchr17747240Frame_Shift_InsnovelK268Tfs*60.16
KIRPchr17746104Missense_MutationNAE647Q0.13
KIRPchr17746515Missense_MutationnovelG510S0.28
LAMLchr17746223Missense_MutationNAL607H0.39
LGGchr17746390SilentnovelR551R0.17
LIHCchr177522525'UTRnovel0.23
LIHCchr17745632Missense_MutationNAQ804R0.31
LUADchr177448603'UTRrs7542370340.14
LUADchr17745432Missense_Mutationrs200388628R871C0.22
LUADchr17746303Missense_MutationNAQ580H0.59
LUADchr17745556Silentrs751977516S829S0.39
LUADchr17747268Nonsense_MutationNAE259*0.1
LUADchr17746099SilentNAP648P0.22
LUADchr17747037Missense_Mutationrs186893279R336C0.13
LUSCchr17747730Missense_MutationnovelP105S0.4
LUSCchr17745444Nonsense_MutationNAQ867*0.16
LUSCchr17746327Silentrs767791810L572L0.45
OVchr17745800Missense_MutationnovelS748Y0.5
OVchr17746012Frame_Shift_InsnovelL678Ffs*20.67
OVchr17745940Missense_MutationNAL701F0.23
OVchr17747115Missense_MutationnovelS310R0.13
OVchr17746918SilentnovelV375V0.68
OVchr17747343Missense_MutationNAG234W0.87
PAADchr17744913Missense_MutationnovelP1044S0.08
PAADchr17746995Missense_Mutationrs373067107D350N0.18
PAADchr17747291Missense_Mutationrs757149711A251V0.19
PRADchr17747058Frame_Shift_DelNAE329Rfs*240.13
PRADchr17746582Silentrs758441347Y487Y0.3
PRADchr17747954Missense_MutationnovelA30V0.27
SARCchr17745864Missense_MutationnovelD727H0.08
SARCchr17747618Missense_MutationnovelE142A0.21
SARCchr177535535'Flanknovel0.96
SKCMchr17746770Missense_MutationNAF425I0.28
SKCMchr17747858Missense_MutationnovelP62H0.3
SKCMchr17745333Missense_Mutationrs774075432P904S0.92
SKCMchr17746982Missense_MutationnovelS354F0.41
SKCMchr17745777SilentNAL756L0.14
SKCMchr17746400Missense_Mutationrs775841183S548F0.41
SKCMchr17746039SilentNAD668D0.28
SKCMchr17745982SilentNAY687Y0.69
STADchr17746384SilentNAV553V0.15
STADchr17747058Frame_Shift_DelNAE329Rfs*240.21
STADchr17747633Missense_MutationnovelC137Y0.18
STADchr17747804Missense_Mutationrs370389257P80L0.25
STADchr17747058Frame_Shift_DelNAE329Rfs*240.09
STADchr17747380Silentrs376833925R221R0.29
STADchr17747475SilentnovelL190L0.05
STADchr17746991Missense_MutationNAS351N0.06
STADchr17747711Missense_MutationnovelI111T0.53
STADchr17746064Missense_MutationNAL660W0.07
STADchr17746726SilentNAA439A0.22
UCECchr17747277Missense_Mutationrs531320666D256N0.26
UCECchr17745556Silentrs751977516S829S0.18
UCECchr17748012Nonsense_MutationNAE11*0.35
UCECchr17744952Missense_Mutationrs758656608E1031K0.32
UCECchr17745058Silentrs748658620P995P0.15
UCECchr17745157SilentnovelP962P0.16
UCECchr17745549Missense_MutationnovelM832V0.11
UCECchr17747556Missense_Mutationrs201806225V163I0.18
UCECchr17746000Silentrs373348504N681N0.43
UCECchr17744871Missense_MutationnovelF1058L0.29
UCECchr17745054In_Frame_DelNAE996del0.48
UCECchr17747152SilentnovelE297E0.49
UCECchr17747150Missense_Mutationrs764663586R298Q0.24
UCECchr177534365'Flankrs7598870650.48
UCECchr17745175Silentrs376639595A956A0.28
UCECchr17744965SilentnovelL1026L0.21
UCECchr17746005Missense_Mutationrs368959543A680T0.19
UCECchr17746615SilentnovelI476I0.15
UCECchr17745564Missense_MutationnovelG827C0.27
UCECchr17747342Missense_Mutationrs749837692G234E0.26
UCECchr17747058Frame_Shift_DelNAE329Rfs*240.18
UCECchr177448343'UTRnovel0.44
UCECchr17745036Missense_Mutationrs367609297V1003I0.35
UCECchr17746738Silentrs370293267D435D0.35
UCECchr177531525'Flanknovel0.44
UCECchr177531365'Flanknovel0.42
UCECchr17744866Nonstop_Mutationnovel*1059Cext*750.53
UCECchr17746577Missense_MutationNAD489V0.41
UCECchr17747785Silentrs377184751S86S0.49
UCECchr177530445'Flanknovel0.3
UCECchr17744904Missense_Mutationrs373429888R1047W0.46
UCECchr17746799Missense_MutationnovelM415T0.18
UCECchr17745646Silentrs371532878D799D0.41
UCECchr17746939SilentnovelL368L0.09
UCECchr17745228Missense_Mutationrs766132255V939M0.48
UCECchr17746169Frame_Shift_DelnovelL625*0.47
UCECchr17746371Missense_MutationnovelE558K0.11
UCECchr17748012Nonsense_MutationNAE11*0.33
UCECchr17747416Silentrs34245365A209A0.43
UCECchr177534365'Flankrs7598870650.15
UCECchr17745176Missense_Mutationrs369029997A956V0.4
UCECchr17747668Missense_MutationNAF125L0.26
UCECchr17746186Missense_MutationnovelK619N0.26
UCECchr17747933Missense_MutationnovelS37Y0.33
UCECchr17747058Frame_Shift_DelNAE329Rfs*240.18
UCECchr17747253Missense_Mutationrs780409881V264M0.41
UCECchr17747209SilentNAS278S0.18
UCECchr17746793Missense_Mutationrs772978681R417H0.27
UCECchr17745709SilentnovelF778F0.3
UCECchr17746618SilentnovelQ475Q0.53
UCECchr17747291Missense_Mutationrs757149711A251V0.32
UCECchr17747937Missense_MutationnovelK36Q0.36
UCECchr177529115'Flanknovel0.36
UCECchr177534155'Flanknovel0.52
UCECchr17747468Missense_MutationnovelA192V0.34

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.20830.18166
LAMLDEL0.07330.12511
LIHCDEL0.5273.9592e-10
LUADDEL0.44770.00029194
SKCMDEL0.31060.21028
THCADEL0.0160.221
UCECDEL0.20780.0018409

Survival Analysis
CancerP-value Q-value
KIRC0.0011

Kaplan-Meier Survival Analysis

SARC0.01

Kaplan-Meier Survival Analysis

ACC0.0071

Kaplan-Meier Survival Analysis

SKCM0.003

Kaplan-Meier Survival Analysis

PRAD0.0088

Kaplan-Meier Survival Analysis

ESCA0.03

Kaplan-Meier Survival Analysis

PAAD0.0082

Kaplan-Meier Survival Analysis

BLCA0.013

Kaplan-Meier Survival Analysis

READ0.02

Kaplan-Meier Survival Analysis

KICH0.0073

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000179409 (Gene tree)
Gene ID
50628
Gene Symbol
GEMIN4
Alias
HHRF-1|DKFZP434B131|p97|DKFZP434D174|HC56|HCAP1
Full Name
gem nuclear organelle associated protein 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
9,586 bases
Position
chr17:744,414-753,999
Accession
15717
RBP type
non-canonical RBP
Summary
The product of this gene is part of a large complex localized to the cytoplasm, nucleoli, and to discrete nuclear bodies called Gemini bodies (gems). The complex functions in spliceosomal snRNP assembly in the cytoplasm, and regenerates spliceosomes required for pre-mRNA splicing in the nucleus. The encoded protein directly interacts with a DEAD box protein and several spliceosome core proteins. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000576383GEMIN4-206633-ENSP00000461368189 (aa)-I3L4M4
ENST00000570364GEMIN4-2031048-ENSP00000461103271 (aa)-I3L4A4
ENST00000573482GEMIN4-2041015XM_005256667ENSP00000460286296 (aa)XP_005256724I3L399
ENST00000319004GEMIN4-2013748-ENSP000003217061058 (aa)-P57678
ENST00000437269GEMIN4-2021182-ENSP00000392460184 (aa)-E7EN12
ENST00000576778GEMIN4-2074729XM_005256670ENSP000004595651047 (aa)XP_005256727I3L2C7
ENST00000574958GEMIN4-205673-ENSP0000045889670 (aa)-I3L1J7
Gene Model
Click here to download ENSG00000179409's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000179409Hypertension8.0569814E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000179409's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000179409GEMIN410084.656ENSMUSG00000049396Gemin410081.664Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly21873635.IBAProcess
GO:0000387spliceosomal snRNP assembly18984161.IDAProcess
GO:0000387spliceosomal snRNP assembly-TASProcess
GO:0005515protein binding11714716.12869526.19750007.21988832.23752268.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus-IEAComponent
GO:0005737cytoplasm10725331.TASComponent
GO:0005829cytosol18984161.20513430.IDAComponent
GO:0005829cytosol-TASComponent
GO:0006364rRNA processing-IEAProcess
GO:0016020membrane19946888.HDAComponent
GO:0016604nuclear body-IDAComponent
GO:0030532small nuclear ribonucleoprotein complex10725331.TASComponent
GO:0032797SMN complex21873635.IBAComponent
GO:0032797SMN complex18984161.IDAComponent
GO:0034719SMN-Sm protein complex21873635.IBAComponent
GO:0034719SMN-Sm protein complex18984161.IDAComponent
GO:0051170import into nucleus-TASProcess
GO:0070062extracellular exosome19056867.HDAComponent
GO:0097504Gemini of coiled bodies-IEAComponent
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