EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
17453828Melanoma-associated antigen family protein-D1 regulation of tumor cell migration, adhesion to endothelium, and actin structures reorganization in response to hypoxic stress.Cell Commun Adhes2007 Jan-FebShen WG-
28639909Silencing of NRAGE induces autophagy via AMPK/Ulk1/Atg13 signaling pathway in NSCLC cells.Tumour Biol2017 JunZhou Ydoi: 10.1177/1010428317709676.
19639218MAGE-D1 inhibits proliferation, migration and invasion of human breast cancer cells.Oncol Rep2009 SepDu Q-
17140727NRAGE suppresses metastasis of melanoma and pancreatic cancer in vitro and in vivo.Cancer Lett2007 Jun 8Chu CS-
29778424NRAGE confers poor prognosis and promotes proliferation, invasion, and chemoresistance in gastric cancer.Gene2018 Aug 20Jiang Xdoi: 10.1016/j.gene.2018.05.060

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchrX51897052Missense_MutationnovelR466L0.47
BLCAchrX51894755Intronnovel0.4
BLCAchrX51901670Missense_MutationnovelR693C0.83
BLCAchrX51897812SilentnovelL528L1
BLCAchrX51895203Missense_Mutationrs782161142Q66E0.95
BRCAchrX51896775In_Frame_DelnovelN376_Q381del0.08
BRCAchrX51895438Missense_MutationnovelM144K0.08
BRCAchrX51901820Missense_MutationnovelR743C0.29
BRCAchrX51898316SilentnovelG590G0.4
BRCAchrX51895199Missense_MutationnovelD64E0.14
BRCAchrX51895210Missense_Mutationrs782818810S68L0.35
BRCAchrX51901833Missense_MutationNAP747L0.31
BRCAchrX51898314Missense_MutationNAG590R0.25
BRCAchrX51895673Frame_Shift_DelNAD222Efs*220.5
BRCAchrX518936735'UTRnovel0.19
BRCAchrX51901612SilentnovelA673A0.1
BRCAchrX51897591Nonsense_MutationNAE511*0.22
BRCAchrX51901563Missense_MutationNAR657T0.2
BRCAchrX51897816Nonsense_MutationNAE530*0.12
BRCAchrX51894681Intronnovel0.27
BRCAchrX51895519Missense_MutationNAD171V0.12
CESCchrX519022333'UTRnovel0.3
CESCchrX51898584SilentNAV595V0.25
CESCchrX51894729Intronnovel0.29
CESCchrX51895740Missense_Mutationrs782441648R245W0.3
CESCchrX51895650Frame_Shift_InsnovelD215Efs*330.17
CESCchrX51896800Missense_MutationNAT382S0.19
CESCchrX51901862Missense_MutationNAP757S0.58
CHOLchrX51897238Nonsense_MutationnovelK485*0.5
CHOLchrX51901776Missense_MutationnovelS728Y0.97
CHOLchrX51896873SilentnovelL406L0.34
COADchrX51896593Missense_MutationNAA313D0.36
COADchrX51897219SilentnovelL478L0.1
COADchrX51901646Missense_Mutationrs147478214E685K0.33
COADchrX51896990SilentNAS445S0.23
COADchrX51901590Missense_MutationNAF666Y0.95
COADchrX51895490Nonsense_MutationnovelY161*0.27
COADchrX51895176Missense_MutationNAP57S0.41
COADchrX51897051Nonsense_MutationNAR466*0.43
COADchrX51897266Missense_MutationNAR494H0.58
COADchrX51894732Intronnovel0.39
COADchrX51895289Missense_MutationnovelF94L0.6
COADchrX51900215Frame_Shift_DelnovelP628Rfs*180.09
COADchrX51896879SilentNAP408P0.5
COADchrX51895221Missense_Mutationrs201938318A72T0.47
ESCAchrX51896658Missense_MutationnovelP335S0.72
ESCAchrX51901886Missense_MutationnovelF765V0.24
ESCAchrX51896649In_Frame_DelNAA337_V342del0.08
ESCAchrX518936605'UTRnovel0.26
ESCAchrX51901795SilentNAF734F0.63
GBMchrX51896886Missense_MutationnovelP411S0.32
GBMchrX51901744Nonsense_MutationnovelW717*0.09
GBMchrX51896988Missense_MutationNAS445T0.09
HNSCchrX51895394SilentnovelS129S0.45
HNSCchrX51897029SilentnovelQ458Q0.16
HNSCchrX51896634Nonsense_MutationnovelQ327*0.77
HNSCchrX51894656Intronnovel0.7
HNSCchrX51900277Missense_MutationnovelV647G0.32
LAMLchrX51898327Missense_MutationnovelG594E0.14
LGGchrX51894669Intronnovel0.33
LGGchrX51897216Missense_MutationnovelK477N0.35
LGGchrX51897880Missense_MutationnovelL551P0.38
LGGchrX51898320Missense_MutationnovelR592C0.34
LIHCchrX51896646Missense_Mutationrs782639348A331T0.42
LIHCchrX51894681Intronnovel0.11
LIHCchrX51895392Missense_MutationnovelS129P0.24
LIHCchrX51895281Missense_MutationNAY92H0.17
LUADchrX51898193Missense_MutationNAA580S0.4
LUADchrX51901914Missense_MutationNAF774Y0.19
LUADchrX51894738Intronnovel0.36
LUADchrX51895218Missense_MutationnovelA71S0.12
LUADchrX51895142SilentNAA45A0.21
LUADchrX51896708Missense_MutationnovelQ351H0.76
LUADchrX51896616Missense_MutationNAQ321K0.4
LUADchrX51895257Missense_MutationnovelT84S0.09
LUADchrX51897577Missense_MutationnovelT506I0.08
LUADchrX51896664Missense_MutationNAA337T0.24
LUADchrX51897585Missense_MutationNAY509N0.07
LUADchrX51901619Missense_MutationnovelA676S0.28
LUADchrX51895601Frame_Shift_InsnovelA206*0.15
LUADchrX51896537SilentnovelV294V0.15
LUSCchrX51901690Missense_MutationnovelE699D0.53
LUSCchrX51896492SilentnovelP279P0.84
LUSCchrX51896975Missense_MutationnovelQ440H0.91
LUSCchrX51896521Missense_MutationnovelG289V0.57
LUSCchrX51894735Intronrs7827554550.17
LUSCchrX51901755Missense_MutationNAG721A0.22
LUSCchrX51895090Missense_MutationnovelQ28R0.46
LUSCchrX51896835Missense_MutationnovelG394C0.6
LUSCchrX51897558Missense_MutationnovelD500H0.26
LUSCchrX51894330Missense_MutationnovelA9V0.1
LUSCchrX51897582Missense_MutationNAV508I0.15
MESOchrX51895097SilentnovelL30L0.1
OVchrX51896510SilentNAQ285Q1
OVchrX51898320Missense_MutationnovelR592C0.14
OVchrX51894670IntronNA0.23
OVchrX51901821Missense_Mutationrs782402643R743H0.38
OVchrX51901702SilentNAG703G0.48
OVchrX51896540SilentNAL295L0.48
OVchrX51895230Nonsense_MutationNAK75*0.18
PRADchrX51896742Missense_MutationNAP363S0.45
READchrX51895525Missense_MutationnovelA173D0.07
READchrX51900205Missense_MutationnovelP623L0.37
READchrX51901646Missense_Mutationrs147478214E685K0.38
SARCchrX518936305'UTRnovel0.34
SARCchrX51897226Missense_MutationnovelY481H0.16
SARCchrX51896770Missense_MutationnovelL372Q0.15
SARCchrX51895077Missense_MutationnovelA24T0.15
SKCMchrX51901741SilentNAT716T0.73
SKCMchrX51897052Missense_Mutationrs782539728R466Q0.27
SKCMchrX51896856Missense_MutationNAP401S0.28
SKCMchrX51898611SilentNAR604R0.58
SKCMchrX51896996SilentnovelN447N0.54
SKCMchrX51898611SilentNAR604R0.41
SKCMchrX51897241Missense_MutationNAD486N0.06
SKCMchrX51897052Missense_Mutationrs782539728R466Q0.24
SKCMchrX51901888Silentrs149192593F765F0.15
SKCMchrX51898618Missense_MutationNAL607F0.81
SKCMchrX51900260SilentNAE641E0.18
SKCMchrX51895320Missense_Mutationrs782524377N105D0.19
SKCMchrX51895242Missense_MutationnovelK79E0.59
STADchrX51895650Missense_Mutationrs781817508D215N0.33
STADchrX51894737Intronnovel0.27
STADchrX51897591Missense_MutationNAE511K0.1
STADchrX51895536Missense_MutationNAP177S0.36
STADchrX51898295Nonsense_MutationNAW583*0.62
STADchrX51895590Missense_MutationNAT195A0.23
STADchrX51896702SilentNAI349I0.14
STADchrX51897209Missense_MutationNAA475V0.51
STADchrX51895193Missense_MutationnovelM62I0.75
STADchrX51896502Missense_MutationNAT283A0.2
STADchrX51900215Frame_Shift_DelnovelP628Rfs*180.17
STADchrX51901671Missense_Mutationrs782675141R693H0.22
STADchrX51896600SilentNAQ315Q0.14
STADchrX51896521Missense_MutationNAG289D0.55
STADchrX51900214Frame_Shift_InsnovelE629Gfs*30.36
STADchrX51895674Missense_MutationnovelG223C1
TGCTchrX51894657Intronnovel0.38
THCAchrX51901655Missense_MutationNAA688T0.78
UCECchrX51897001Missense_MutationnovelR449H0.36
UCECchrX51897860Silentrs150589159P544P0.32
UCECchrX51901665Missense_MutationNAR691I0.35
UCECchrX51894714IntronNA0.42
UCECchrX51900199Missense_MutationNAR621Q0.33
UCECchrX51895560Missense_MutationnovelN185Y0.33
UCECchrX51898305Missense_MutationNAR587C0.14
UCECchrX51898144SilentnovelL563L0.05
UCECchrX51897043Missense_MutationnovelA463V0.42
UCECchrX51896681SilentnovelV342V0.38
UCECchrX51897808Missense_MutationnovelQ527R0.17
UCECchrX51895050Splice_Regionnovel0.32
UCECchrX51901685Missense_MutationnovelD698Y0.18
UCECchrX51896526Frame_Shift_DelnovelN293Mfs*500.39
UCECchrX519022903'UTRnovel0.54
UCECchrX51895306Missense_MutationnovelA100V0.26
UCECchrX51896679Missense_MutationNAV342M0.27
UCECchrX51897860Silentrs150589159P544P0.24
UCECchrX51895138Missense_MutationNAQ44P0.41
UCECchrX51896593Missense_MutationnovelA313V0.13
UCECchrX51898133Missense_MutationNAL560F0.38
UCECchrX51898310SilentnovelK588K0.32
UCECchrX51897570Missense_MutationNAE504K0.4
UCECchrX51898321Missense_Mutationrs782215243R592H0.33
UCECchrX51898310Missense_MutationnovelK588N0.1
UCECchrX518937215'UTRnovel0.33
UCECchrX51897552SilentnovelL498L0.33
UCECchrX51897860Frame_Shift_InsnovelE545*0.48
UCECchrX51901665Missense_MutationNAR691I0.07
UCECchrX51896522Silentrs140810987G289G0.51
UCECchrX51895145SilentnovelT46T0.34
UCECchrX51897884Splice_RegionnovelG552G0.31
UCECchrX51897017SilentnovelS454S0.53
UCECchrX51901643Missense_MutationnovelA684T0.29
UCECchrX51901671Missense_Mutationrs782675141R693H0.42
UCECchrX51897591Nonsense_MutationNAE511*0.42
UCECchrX51898321Missense_Mutationrs782215243R592H0.47
UCECchrX51894694Intronnovel0.32
UCECchrX51898611Missense_MutationnovelR604S0.22
UCECchrX51894670Intronrs3725077870.32
UCECchrX51896762SilentNAP369P0.58
UCECchrX51895740Missense_Mutationrs782441648R245W0.36
UCECchrX51901757Missense_MutationNAD722Y0.35
UCECchrX51897613Missense_MutationnovelF518S0.16
UCECchrX51896548Missense_Mutationrs374985036T298M0.6
UCECchrX51895649Silentrs782743012T214T0.18
UCECchrX51895740Missense_Mutationrs782441648R245W0.41
UCECchrX51898165SilentnovelI570I0.1
UCECchrX51898315Missense_MutationnovelG590E0.22
UCECchrX51895531Missense_MutationnovelS175N0.49
UCECchrX51895688SilentnovelQ227Q0.29
UCECchrX51895740Missense_Mutationrs782441648R245W0.34
UCECchrX51897240Missense_MutationnovelK485N0.14
UCECchrX51895361SilentnovelT118T0.48
UCECchrX51897857SilentnovelT543T0.38
UCECchrX51901653Missense_MutationnovelR687Q0.45
UCECchrX51901847Missense_Mutationrs782050057G752S0.27
UCECchrX51894307Translation_Start_SitenovelM1?0.11
UCECchrX51896946Missense_Mutationrs200856189A431T0.38
UCECchrX518936955'UTRnovel0.36
UCECchrX51895604SilentnovelN199N0.5
UCECchrX51896496Missense_MutationnovelP281S0.57
UCECchrX51895147Missense_MutationnovelA47V0.06
UCECchrX51897060Missense_MutationnovelA469T0.34
UCECchrX51901873In_Frame_InsnovelS762_A767dup0.13
UCECchrX51895496Missense_MutationNAF163L0.41
UCECchrX51895740Missense_Mutationrs782441648R245W0.08
UCECchrX51898299Missense_MutationnovelA585T0.18
UCECchrX51895498Missense_MutationnovelS164Y0.41
UCECchrX51901847Missense_Mutationrs782050057G752S0.18
UCECchrX51896651Nonsense_MutationnovelW332*0.4
UCECchrX51897611SilentNAC517C0.28
UCECchrX51894745Intronnovel0.23
UCECchrX51897794Splice_SiteNAX523_splice0.1
UCECchrX51898133Missense_MutationNAL560F0.48
UCECchrX51901937Splice_Regionrs7826590810.45
UCECchrX51896445Missense_MutationNAD264N0.35
UCECchrX518936955'UTRnovel0.21
UCECchrX51900215Frame_Shift_DelnovelP628Rfs*180.13
UCECchrX51896523Missense_Mutationrs782366877A290T0.69
UCECchrX51901609SilentnovelE672E0.42
UCECchrX51898618Missense_MutationnovelL607I0.1
UCECchrX51898300Missense_MutationNAA585V0.33
UCECchrX518937085'UTRnovel0.53
UCECchrX51896549SilentnovelT298T0.44
UCECchrX51896421Missense_MutationnovelN256H0.06
UCECchrX51901643Missense_MutationnovelA684T0.43
UVMchrX51897809SilentnovelQ527Q0.35

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
SARCAMP0.30350.19108
THCADEL0.0020.21991

Survival Analysis
CancerP-value Q-value
THYM0.013

Kaplan-Meier Survival Analysis

KIRC0.048

Kaplan-Meier Survival Analysis

STAD0.00036

Kaplan-Meier Survival Analysis

SARC0.00059

Kaplan-Meier Survival Analysis

ACC0.033

Kaplan-Meier Survival Analysis

SKCM0.041

Kaplan-Meier Survival Analysis

LUSC0.02

Kaplan-Meier Survival Analysis

PAAD0.0065

Kaplan-Meier Survival Analysis

PCPG0.025

Kaplan-Meier Survival Analysis

BLCA0.029

Kaplan-Meier Survival Analysis

UCEC0.033

Kaplan-Meier Survival Analysis

LIHC0.0003

Kaplan-Meier Survival Analysis

UVM0.032

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000179222 (Gene tree)
Gene ID
9500
Gene Symbol
MAGED1
Alias
NRAGE|DLXIN-1
Full Name
MAGE family member D1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
99,351 bases
Position
chrX:51,803,007-51,902,357
Accession
6813
RBP type
non-canonical RBP
Summary
This gene is a member of the melanoma antigen gene (MAGE) family. Most of the genes of this family encode tumor specific antigens that are not expressed in normal adult tissues except testis. Although the protein encoded by this gene shares strong homology with members of the MAGE family, it is expressed in almost all normal adult tissues. This gene has been demonstrated to be involved in the p75 neurotrophin receptor mediated programmed cell death pathway. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000375695MAGED1-2022875-ENSP00000364847834 (aa)-Q9Y5V3
ENST00000375772MAGED1-2042701XM_011530835ENSP00000364927778 (aa)XP_011529137Q9Y5V3
ENST00000482599MAGED1-208341--- (aa)--
ENST00000485420MAGED1-2092906--- (aa)--
ENST00000473931MAGED1-206950--- (aa)--
ENST00000375722MAGED1-2032806-ENSP00000364874778 (aa)-Q9Y5V3
ENST00000482188MAGED1-207680--- (aa)--
ENST00000494718MAGED1-2105418--- (aa)--
ENST00000470461MAGED1-205810--- (aa)--
ENST00000326587MAGED1-2012747-ENSP00000325333778 (aa)-Q9Y5V3
Gene Model
Click here to download ENSG00000179222's gene model file
Pathways
Pathway IDPathway NameSource
hsa04722Neurotrophin signaling pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000179222's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000179222MAGED110086.752ENSMUSG00000025151Maged110086.752Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000785chromatin-ISSComponent
GO:0003713transcription coactivator activity-IEAFunction
GO:0005515protein binding15930293.20864041.21516116.25416956.25910212.26871637.IPIFunction
GO:0005634nucleus-ISSComponent
GO:0005737cytoplasm-IEAComponent
GO:0005886plasma membrane-IEAComponent
GO:0006355regulation of transcription, DNA-templated15930293.TASProcess
GO:0006357regulation of transcription by RNA polymerase II-IEAProcess
GO:0032922circadian regulation of gene expression-ISSProcess
GO:0032991protein-containing complex15930293.IDAComponent
GO:0042752regulation of circadian rhythm-IEAProcess
GO:0042802identical protein binding25416956.IPIFunction
GO:0042981regulation of apoptotic process15930293.TASProcess
GO:0043406positive regulation of MAP kinase activity-IEAProcess
GO:0045892negative regulation of transcription, DNA-templated-IEAProcess
GO:0045893positive regulation of transcription, DNA-templated-IEAProcess
GO:0050680negative regulation of epithelial cell proliferation15930293.IDAProcess
GO:0090190positive regulation of branching involved in ureteric bud morphogenesis-IEAProcess
GO:2001235positive regulation of apoptotic signaling pathway-IEAProcess
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