EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr8664291215'UTRnovel0.41
BLCAchr8664303643'UTRnovel0.52
BLCAchr866430173Frame_Shift_DelnovelG348Lfs*280.22
BLCAchr866429948Missense_Mutationrs766463381R273C0.38
BLCAchr8664304203'UTRnovel0.32
BLCAchr866430092Missense_MutationnovelG321C0.07
BLCAchr866429161SilentnovelL10L0.3
BRCAchr8664305783'UTRnovel0.29
BRCAchr866429180Missense_MutationNAE17K0.2
CESCchr866429755SilentnovelH208H0.5
CESCchr866430223Silentrs747913909R364R0.2
CESCchr866429953SilentNAV274V0.26
COADchr866430095In_Frame_Delrs769712999P327_G337del0.41
COADchr866429266Frame_Shift_DelNAP47Rfs*420.49RRS1
COADchr866429373Missense_MutationnovelT81M0.5RRS1
COADchr866429266Frame_Shift_DelNAP47Rfs*420.16RRS1
COADchr8664305123'UTRnovel0.27
COADchr866429266Frame_Shift_DelNAP47Rfs*420.42RRS1
COADchr866429985Missense_MutationNAT285I0.44
COADchr8664290815'UTRrs7647531180.3
ESCAchr8664306673'UTRnovel0.23
ESCAchr866429759Missense_MutationnovelT210A0.65
HNSCchr866429188Missense_MutationnovelE19D0.24
HNSCchr8664302443'UTRnovel0.42
HNSCchr8664303663'UTRnovel0.22
HNSCchr866429602SilentnovelL157L0.43
KIRCchr8664302733'UTRnovel0.05
KIRCchr866429773Frame_Shift_InsnovelE216Gfs*710.28
KIRCchr866429854Missense_MutationNAK241N0.45
KIRPchr866430138Missense_MutationNAG336E0.26
LIHCchr866429248SilentNAL39L0.37
LIHCchr8664305163'UTRnovel0.41
LUADchr866429241Missense_MutationnovelG37D0.27RRS1
LUADchr8664290295'UTRnovel0.4
LUSCchr866429815SilentnovelS228S0.61
LUSCchr866429868Missense_MutationnovelR246L0.1
OVchr8664291025'UTRnovel0.36
OVchr866429912Missense_MutationnovelF261L0.46
OVchr8664303243'UTRnovel0.12
PAADchr8664291025'UTRnovel0.23
PRADchr8664303533'UTRnovel0.41
PRADchr8664303543'UTRnovel0.4
PRADchr8664304223'UTRnovel0.23
PRADchr8664303933'UTRnovel0.13
SKCMchr866429881Missense_MutationNAK250N0.27
SKCMchr866429898Missense_MutationNAP256L0.14
STADchr866429266Frame_Shift_DelNAP47Rfs*420.58RRS1
STADchr866429828Missense_MutationNAG233W0.11
STADchr8664290335'UTRnovel0.37
STADchr866430105Missense_MutationNAG325A0.4
STADchr866429200SilentNAR23R0.19
STADchr866430194Nonsense_MutationNAG355*0.15
STADchr866429266Frame_Shift_DelNAP47Rfs*420.38RRS1
STADchr866429266Frame_Shift_DelNAP47Rfs*420.42RRS1
STADchr866429565Missense_MutationNAG145D0.19RRS1
TGCTchr8664304663'UTRnovel0.2
UCECchr8664302363'UTRnovel0.27
UCECchr8664290555'UTRnovel0.09
UCECchr8664307223'UTRnovel0.36
UCECchr866430077SilentnovelR316R0.22
UCECchr866429541Missense_MutationnovelS137N0.38RRS1
UCECchr866429159Missense_Mutationrs199546938L10F0.36
UCECchr866429242SilentNAG37G0.34
UCECchr8664302903'UTRnovel0.26
UCECchr8664305123'UTRnovel0.32
UCECchr866429601Missense_MutationnovelL157R0.42RRS1
UCECchr866430162Missense_Mutationrs775749259S344Y0.33
UCECchr8664305123'UTRnovel0.23
UCECchr8664305123'UTRnovel0.38
UCECchr8664305113'UTRnovel0.42
UCECchr866429266Frame_Shift_DelNAP47Rfs*420.28RRS1
UCECchr8664305123'UTRnovel0.29
UCECchr8664305123'UTRnovel0.5
UCECchr866430162Missense_MutationnovelS344F0.52
UCECchr8664305123'UTRnovel0.38
UCECchr8664305123'UTRnovel0.2
UCECchr866429266Frame_Shift_DelNAP47Rfs*420.43RRS1
UCECchr866429378Missense_MutationnovelR83C0.46RRS1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
PRADAMP0.23173.7005e-05
READDEL0.04240.20625
SARCAMP0.2490.18425
THCADEL0.0080.038162

Survival Analysis
CancerP-value Q-value
KIRC0.012

Kaplan-Meier Survival Analysis

SARC0.017

Kaplan-Meier Survival Analysis

MESO0.044

Kaplan-Meier Survival Analysis

UCS0.0052

Kaplan-Meier Survival Analysis

HNSC0.0081

Kaplan-Meier Survival Analysis

PRAD0.024

Kaplan-Meier Survival Analysis

KIRP0.00013

Kaplan-Meier Survival Analysis

BLCA0.0051

Kaplan-Meier Survival Analysis

CESC0.035

Kaplan-Meier Survival Analysis

LAML0.011

Kaplan-Meier Survival Analysis

KICH0.032

Kaplan-Meier Survival Analysis

UCEC0.021

Kaplan-Meier Survival Analysis

LIHC0.0043

Kaplan-Meier Survival Analysis

LGG0.024

Kaplan-Meier Survival Analysis

LUAD0.0051

Kaplan-Meier Survival Analysis

UVM0.0031

Kaplan-Meier Survival Analysis

Drugs

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Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000179041 (Gene tree)
Gene ID
23212
Gene Symbol
RRS1
Alias
KIAA0112
Full Name
ribosome biogenesis regulator 1 homolog
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
1,706 bases
Position
chr8:66,429,028-66,430,733
Accession
17083
RBP type
canonical RBP
Summary
(Ribosome Biogenesis Regulator 1 Homolog) is a Protein Coding gene. Diseases associated with RRS1 include Robinow Syndrome.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000322396RRS1PF04939.122.8e-5611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26159998Chaperoning 5S RNA assembly.Genes Dev2015 Jul 1Madru Cdoi: 10.1101/gad.260349.115.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000320270RRS1-2011706-ENSP00000322396365 (aa)-Q15050
Gene Model
Click here to download ENSG00000179041's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000179041's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000179041RRS18767.296ENSATEG00000011743rrs19661.264Anabas_testudineus
ENSG00000179041RRS110097.260ENSANAG00000018116RRS110097.260Aotus_nancymaae
ENSG00000179041RRS18465.246ENSAMXG00000037893rrs17965.246Astyanax_mexicanus
ENSG00000179041RRS110093.973ENSBTAG00000016716RRS110093.973Bos_taurus
ENSG00000179041RRS17045.283WBGene00007617rrbs-17845.283Caenorhabditis_elegans
ENSG00000179041RRS110097.260ENSCJAG00000022034RRS110097.260Callithrix_jacchus
ENSG00000179041RRS110094.247ENSCAFG00000007313RRS110094.247Canis_familiaris
ENSG00000179041RRS110094.247ENSCAFG00020020365-10094.247Canis_lupus_dingo
ENSG00000179041RRS110094.247ENSCAFG00020016049-10094.247Canis_lupus_dingo
ENSG00000179041RRS110094.247ENSCHIG00000009141RRS110094.247Capra_hircus
ENSG00000179041RRS19689.112ENSCPOG00000000647RRS19990.782Cavia_porcellus
ENSG00000179041RRS110096.712ENSCCAG00000032186RRS110096.712Cebus_capucinus
ENSG00000179041RRS110098.356ENSCATG00000016944RRS110098.356Cercocebus_atys
ENSG00000179041RRS110097.534ENSCSAG00000018552RRS110097.534Chlorocebus_sabaeus
ENSG00000179041RRS18796.845ENSCHOG00000002455RRS110095.616Choloepus_hoffmanni
ENSG00000179041RRS18765.337ENSCPBG00000021374RRS19265.337Chrysemys_picta_bellii
ENSG00000179041RRS18748.287ENSCING00000002177-9648.397Ciona_intestinalis
ENSG00000179041RRS18747.678ENSCSAVG00000011819-9647.468Ciona_savignyi
ENSG00000179041RRS110097.808ENSCANG00000012718RRS110097.808Colobus_angolensis_palliatus
ENSG00000179041RRS110088.767ENSCGRG00001002391-10088.767Cricetulus_griseus_chok1gshd
ENSG00000179041RRS19785.915ENSCGRG00001015575-9985.915Cricetulus_griseus_chok1gshd
ENSG00000179041RRS18356.436ENSCSEG00000014750rrs19552.616Cynoglossus_semilaevis
ENSG00000179041RRS18456.721ENSCVAG00000017878rrs19852.198Cyprinodon_variegatus
ENSG00000179041RRS18266.667ENSDARG00000003941rrs19165.397Danio_rerio
ENSG00000179041RRS110093.425ENSDNOG00000017900RRS19993.425Dasypus_novemcinctus
ENSG00000179041RRS16193.665ENSDORG00000026331Rrs110089.219Dipodomys_ordii
ENSG00000179041RRS18842.609FBgn0052409CG324099244.582Drosophila_melanogaster
ENSG00000179041RRS15588.557ENSETEG00000000935-5588.557Echinops_telfairi
ENSG00000179041RRS18055.782ENSEBUG00000013506rrs19555.088Eptatretus_burgeri
ENSG00000179041RRS110095.068ENSEASG00005001691RRS110095.068Equus_asinus_asinus
ENSG00000179041RRS19291.642ENSECAG00000004492RRS110086.301Equus_caballus
ENSG00000179041RRS110092.603ENSEEUG00000013719RRS110092.603Erinaceus_europaeus
ENSG00000179041RRS110094.795ENSFCAG00000014332RRS110094.795Felis_catus
ENSG00000179041RRS18063.245ENSGALG00000030890RRS19063.043Gallus_gallus
ENSG00000179041RRS18662.540ENSGACG00000002969rrs19958.856Gasterosteus_aculeatus
ENSG00000179041RRS18764.526ENSGAGG00000023718RRS18965.337Gopherus_agassizii
ENSG00000179041RRS110098.904ENSGGOG00000026663RRS110098.904Gorilla_gorilla
ENSG00000179041RRS110090.959ENSHGLG00000021423RRS110090.959Heterocephalus_glaber_female
ENSG00000179041RRS110090.959ENSHGLG00100020640RRS110090.959Heterocephalus_glaber_male
ENSG00000179041RRS19762.570ENSHCOG00000015358rrs18567.097Hippocampus_comes
ENSG00000179041RRS18265.436ENSIPUG00000014412rrs18964.744Ictalurus_punctatus
ENSG00000179041RRS110095.342ENSSTOG00000026310RRS110095.342Ictidomys_tridecemlineatus
ENSG00000179041RRS17681.720ENSJJAG00000020395-10071.739Jaculus_jaculus
ENSG00000179041RRS18490.584ENSJJAG00000011507-10088.011Jaculus_jaculus
ENSG00000179041RRS19459.649ENSKMAG00000008238rrs19164.557Kryptolebias_marmoratus
ENSG00000179041RRS18567.097ENSLACG00000004058RRS19566.984Latimeria_chalumnae
ENSG00000179041RRS18468.197ENSLOCG00000017812rrs19267.516Lepisosteus_oculatus
ENSG00000179041RRS18795.584ENSLAFG00000015405RRS19993.699Loxodonta_africana
ENSG00000179041RRS110097.808ENSMFAG00000042747RRS110097.808Macaca_fascicularis
ENSG00000179041RRS110097.808ENSMMUG00000000886RRS110097.808Macaca_mulatta
ENSG00000179041RRS110097.808ENSMNEG00000011696RRS110097.808Macaca_nemestrina
ENSG00000179041RRS110098.356ENSMLEG00000004794RRS110098.356Mandrillus_leucophaeus
ENSG00000179041RRS18267.442ENSMZEG00005004349RRS18866.667Maylandia_zebra
ENSG00000179041RRS110090.137ENSMAUG00000005392Rrs110090.137Mesocricetus_auratus
ENSG00000179041RRS19591.304ENSMOCG00000015862Rrs18787.079Microtus_ochrogaster
ENSG00000179041RRS19079.573ENSMODG00000024952RRS19974.133Monodelphis_domestica
ENSG00000179041RRS110090.411MGP_CAROLIEiJ_G0013936Rrs110090.137Mus_caroli
ENSG00000179041RRS110090.685ENSMUSG00000061024Rrs110090.685Mus_musculus
ENSG00000179041RRS110090.411MGP_PahariEiJ_G0023883Rrs110090.411Mus_pahari
ENSG00000179041RRS110090.959MGP_SPRETEiJ_G0014739Rrs110090.959Mus_spretus
ENSG00000179041RRS110093.699ENSMPUG00000018626RRS19893.699Mustela_putorius_furo
ENSG00000179041RRS110092.329ENSNGAG00000012904Rrs110092.329Nannospalax_galili
ENSG00000179041RRS18890.625ENSNLEG00000027730RRS19696.939Nomascus_leucogenys
ENSG00000179041RRS18268.106ENSONIG00000014187rrs19266.981Oreochromis_niloticus
ENSG00000179041RRS19070.909ENSOANG00000012348RRS19366.038Ornithorhynchus_anatinus
ENSG00000179041RRS19592.775ENSOCUG00000013490RRS110091.870Oryctolagus_cuniculus
ENSG00000179041RRS19653.429ENSOMEG00000008525rrs19552.486Oryzias_melastigma
ENSG00000179041RRS110093.151ENSOGAG00000001085RRS110093.151Otolemur_garnettii
ENSG00000179041RRS110088.767ENSOARG00000017417RRS19888.767Ovis_aries
ENSG00000179041RRS110098.904ENSPPAG00000024378RRS110098.904Pan_paniscus
ENSG00000179041RRS110094.521ENSPPRG00000021408RRS110094.521Panthera_pardus
ENSG00000179041RRS110098.630ENSPTRG00000030988RRS110098.630Pan_troglodytes
ENSG00000179041RRS110071.233ENSPANG00000035974RRS110071.781Papio_anubis
ENSG00000179041RRS18266.667ENSPKIG00000007953rrs19066.452Paramormyrops_kingsleyae
ENSG00000179041RRS110089.589ENSPEMG00000014427Rrs110089.589Peromyscus_maniculatus_bairdii
ENSG00000179041RRS18259.801ENSPMAG00000006513rrs18159.486Petromyzon_marinus
ENSG00000179041RRS18481.494ENSPCIG00000026695RRS110074.005Phascolarctos_cinereus
ENSG00000179041RRS18268.896ENSPFOG00000020722rrs19768.038Poecilia_formosa
ENSG00000179041RRS18358.361ENSPREG00000019960rrs19853.134Poecilia_reticulata
ENSG00000179041RRS18198.316ENSPPYG00000018637RRS110098.316Pongo_abelii
ENSG00000179041RRS19094.242ENSPCAG00000009115RRS110093.151Procavia_capensis
ENSG00000179041RRS18065.753ENSPNAG00000021707rrs18963.924Pygocentrus_nattereri
ENSG00000179041RRS110091.507ENSRNOG00000007240Rrs110091.507Rattus_norvegicus
ENSG00000179041RRS110097.808ENSRBIG00000009132RRS110097.808Rhinopithecus_bieti
ENSG00000179041RRS110097.808ENSRROG00000013472RRS110097.808Rhinopithecus_roxellana
ENSG00000179041RRS110092.329ENSSBOG00000012639-10092.877Saimiri_boliviensis_boliviensis
ENSG00000179041RRS110093.425ENSSBOG00000011006-10093.425Saimiri_boliviensis_boliviensis
ENSG00000179041RRS18053.925ENSSFOG00015015772rrs18653.746Scleropages_formosus
ENSG00000179041RRS18168.243ENSSMAG00000015226rrs18865.938Scophthalmus_maximus
ENSG00000179041RRS18290.449ENSSARG00000006976RRS18290.449Sorex_araneus
ENSG00000179041RRS110095.068ENSSSCG00000006214RRS110095.068Sus_scrofa
ENSG00000179041RRS18464.610ENSTRUG00000008796rrs19165.232Takifugu_rubripes
ENSG00000179041RRS17667.029ENSTNIG00000004026rrs19366.984Tetraodon_nigroviridis
ENSG00000179041RRS110095.068ENSTBEG00000014752RRS110095.068Tupaia_belangeri
ENSG00000179041RRS110095.616ENSUAMG00000008502RRS110095.616Ursus_americanus
ENSG00000179041RRS110094.521ENSVVUG00000018452RRS110094.521Vulpes_vulpes
ENSG00000179041RRS18268.562ENSXCOG00000009809rrs18967.937Xiphophorus_couchianus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000027ribosomal large subunit assembly24120868.IMPProcess
GO:0000055ribosomal large subunit export from nucleus21873635.IBAProcess
GO:0000447endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0000794condensed nuclear chromosome19465021.IDAComponent
GO:0001650fibrillar center-IDAComponent
GO:0002244hematopoietic progenitor cell differentiation-IEAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding16189514.25416956.IPIFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus19465021.IDAComponent
GO:0005783endoplasmic reticulum-IEAComponent
GO:0007080mitotic metaphase plate congression19465021.IMPProcess
GO:00080975S rRNA binding24120868.IDAFunction
GO:0030687preribosome, large subunit precursor21873635.IBAComponent
GO:0042273ribosomal large subunit biogenesis21873635.IBAProcess
GO:0042273ribosomal large subunit biogenesis24120868.IMPProcess
GO:1901796regulation of signal transduction by p53 class mediator24120868.IMPProcess
GO:1902570protein localization to nucleolus24120868.IMPProcess
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