EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
23290008Use of potassium channel tetramerization domain-containing 12 as a biomarker for diagnosis and prognosis of gastrointestinal stromal tumor.Hum Pathol2013 JulHasegawa Tdoi: 10.1016/j.humpath.2012.10.013
26847701KCTD12 Regulates Colorectal Cancer Cell Stemness through the ERK Pathway.Sci Rep2016 Feb 5Li Ldoi: 10.1038/srep20460.
28869606KCTD12 promotes tumorigenesis by facilitating CDC25B/CDK1/Aurora A-dependent G2/M transition.Oncogene2017 Nov 2Zhong Ydoi: 10.1038/onc.2017.287

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1376885489SilentnovelI220I0.43
BLCAchr1376885423SilentNAT242T0.82
BRCAchr1376886017In_Frame_DelnovelG41_V44del0.57
BRCAchr13768815283'UTRnovel0.08
BRCAchr1376885211Missense_MutationnovelI313T0.14
CESCchr13768807723'UTRnovel0.21
CESCchr1376885879Silentrs751329210R90R0.27
CESCchr13768802163'UTRnovel0.1
CESCchr13768808563'UTRnovel0.53
COADchr1376885445Missense_MutationnovelR235P0.22
COADchr1376885338Missense_MutationnovelY271H0.35
COADchr1376885244Missense_MutationNAF302Y0.13
COADchr1376885497Missense_MutationnovelY218H0.24
COADchr1376885472Missense_MutationNAA226V0.13
COADchr1376886108Frame_Shift_DelnovelG14Afs*250.13
ESCAchr13768808153'UTRnovel0.52
ESCAchr13768808163'UTRnovel0.33
GBMchr1376885294SilentNAS285S0.19
GBMchr1376885315Silentrs567595130E278E0.61
HNSCchr1376885359Missense_MutationnovelE264K0.34
HNSCchr1376885957SilentnovelF64F0.28
KIRPchr1376885356Missense_MutationnovelR265G0.28
LUADchr1376885891Silentrs561972031G86G0.34
LUSCchr1376885230Missense_MutationnovelD307Y0.38
LUSCchr1376885921Missense_MutationNAS76R0.26
MESOchr1376885293Nonsense_MutationnovelE286*0.5
OVchr1376885225Missense_MutationNAQ308H0.56
OVchr1376885294SilentNAS285S0.43
PAADchr1376885265Missense_MutationnovelS295N0.2
PAADchr1376885912SilentnovelR79R0.19
READchr1376885311Missense_MutationnovelA280T0.43
SARCchr13768803163'UTRnovel0.27
SARCchr13768837853'UTRnovel0.33
SKCMchr1376885294SilentNAS285S0.8
SKCMchr1376885246SilentNAA301A0.35
STADchr1376885210Missense_MutationNAI313M0.06
UCECchr13768837903'UTRnovel0.4
UCECchr13768815033'UTRnovel0.55
UCECchr13768806093'UTRnovel0.17
UCECchr13768812883'UTRnovel0.3
UCECchr13768801973'UTRnovel0.51
UCECchr1376885378SilentnovelR257R0.2
UCECchr13768805393'UTRnovel0.36
UCECchr13768834593'UTRnovel0.33
UCECchr1376886077SilentnovelS24S0.8
UCECchr13768807893'UTRnovel0.11
UCECchr13768836893'UTRnovel0.7
UCECchr13768851153'UTRnovel0.35
UCECchr13768802653'UTRnovel0.23
UCECchr13768835243'UTRnovel0.31
UCECchr13768806153'UTRnovel0.19
UCECchr13768808103'UTRnovel0.16
UCECchr13768837633'UTRnovel0.22
UCECchr13768838603'UTRrs1420714480.59
UCECchr13768802263'UTRnovel0.31
UCECchr13768851153'UTRnovel0.17
UCECchr13768816223'UTRnovel0.71
UCECchr13768834643'UTRrs5298546950.26
UCECchr13768801923'UTRnovel0.32
UCECchr13768851193'UTRnovel0.27
UCECchr13768850573'UTRnovel0.5
UCECchr13768808663'UTRnovel0.33
UCECchr13768834923'UTRnovel0.36
UCECchr13768808153'UTRnovel0.31
UCECchr1376885463Missense_MutationnovelK229R0.3

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.41670.076931
PRADDEL0.27851.7107e-36

Survival Analysis
CancerP-value Q-value
KIRC0.016

Kaplan-Meier Survival Analysis

ACC0.014

Kaplan-Meier Survival Analysis

SKCM0.011

Kaplan-Meier Survival Analysis

KIRP0.046

Kaplan-Meier Survival Analysis

PAAD0.012

Kaplan-Meier Survival Analysis

LAML0.0022

Kaplan-Meier Survival Analysis

UCEC0.0031

Kaplan-Meier Survival Analysis

LGG0.0015

Kaplan-Meier Survival Analysis

LUAD0.00022

Kaplan-Meier Survival Analysis

UVM0.017

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000178695 (Gene tree)
Gene ID
115207
Gene Symbol
KCTD12
Alias
KIAA1778|PFET1|C13orf2
Full Name
potassium channel tetramerization domain containing 12
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
6,240 bases
Position
chr13:76,880,166-76,886,405
Accession
14678
RBP type
non-canonical RBP
Summary
(Potassium Channel Tetramerization Domain Containing 12) is a Protein Coding gene. Diseases associated with KCTD12 include Gastrointestinal Stromal Tumor. Among its related pathways are Sweet Taste Signaling and Neuropathic Pain-Signaling in Dorsal Horn Neurons. An important paralog of this gene is KCTD8.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000377474KCTD12-2016225-ENSP00000366694325 (aa)-Q96CX2
Gene Model
Click here to download ENSG00000178695's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000178695Platelet Function Tests5.4200000E-006-
ENSG00000178695Anticonvulsants2E-725944848
ENSG00000178695Bipolar Disorder2E-725944848
ENSG00000178695Depressive Disorder2E-725944848
ENSG00000178695Psychotropic Drugs2E-725944848
ENSG00000178695Schizophrenia2E-725944848
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000178695's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22681889.HDAFunction
GO:0030054cell junction-IEAComponent
GO:0042734presynaptic membrane-IEAComponent
GO:0042802identical protein binding27152988.IPIFunction
GO:0045211postsynaptic membrane-IEAComponent
GO:0051260protein homooligomerization-IEAProcess
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