EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24146193Specific expression of k63-linked ubiquitination of calmodulin-like protein 5 in breast cancer of premenopausal patients.J Cancer Res Clin Oncol2013 DecDebald Mdoi: 10.1007/s00432-013-1541-y

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1054995335'UTRnovel0.4
BLCAchr105499126Silentrs368824145R105R0.18
BRCAchr105499320Missense_MutationNAT40M0.1
BRCAchr105499336Missense_Mutationrs760863630A35T0.47
CESCchr1054994595'UTRnovel0.24
COADchr1054995465'UTRnovel0.33
COADchr105499181SilentNAA86A0.48
COADchr105499168Missense_MutationNAD91N0.29
COADchr105499252Missense_MutationNAE63K0.14
ESCAchr105499162Missense_MutationnovelD93Y0.29
GBMchr105499021Missense_MutationNAA140T0.83
GBMchr105499216Missense_MutationnovelK75Q0.43
GBMchr105499224Missense_Mutationrs199855788A72V0.64
GBMchr105499223SilentNAA72A0.66
LAMLchr105499286SilentnovelK51K0.05
LGGchr105499232SilentNAF69F0.09
LGGchr105499158Missense_MutationnovelG94D0.26
LUADchr105499283SilentnovelL52L0.16
LUADchr105499364Missense_MutationNAN25K0.12
LUADchr105499205SilentnovelA78A0.16
LUSCchr105499074Missense_MutationNAM122T0.24
LUSCchr105499111Missense_Mutationrs767115673L110M0.22
LUSCchr105499265SilentnovelS58S0.29
LUSCchr105499141Missense_MutationNAV100L0.15
OVchr105499365Missense_MutationNAN25S0.37
READchr105499252Missense_MutationNAE63K0.33
READchr1054994705'UTRnovel0.46
SARCchr105499432Missense_MutationNAG3S1
SKCMchr105499184SilentNAV85V0.29
SKCMchr105499075Missense_MutationNAM122L0.5
SKCMchr105499232SilentNAF69F0.33
SKCMchr105499046Missense_MutationNAD131E0.27
SKCMchr105499163SilentnovelQ92Q0.29
SKCMchr105499278Missense_MutationNAS54F0.21
SKCMchr105499252Missense_MutationNAE63K0.56
SKCMchr105499102Missense_MutationNAP113S0.23
SKCMchr105499362Missense_MutationNAG26D0.39
SKCMchr105499231SilentNAL70L0.43
SKCMchr105499303Missense_MutationNAE46K0.27
STADchr105499022Missense_MutationNAF139L0.38
STADchr105499224Missense_Mutationrs199855788A72V0.55
STADchr105499066Missense_MutationNAE125K0.43
STADchr105499262SilentNAD59D0.3
STADchr105499256SilentNAD61D0.21
UCECchr105499169SilentnovelF90F0.26
UCECchr105499336Missense_Mutationrs760863630A35T0.11
UCECchr105499177Missense_MutationnovelR88C0.29
UCECchr105499106SilentnovelG111G0.21
UCECchr1054995175'UTRnovel0.33
UCECchr105499224Missense_Mutationrs199855788A72V0.54
UCECchr105499325Missense_MutationnovelK38N0.3
UCECchr1054994595'UTRNA0.36
UCECchr1054989703'UTRnovel0.47
UCECchr1054988793'UTRnovel0.42
UCECchr105499259Silentrs747649025G60G0.53
UCECchr105499226SilentNAT71T0.45
UCECchr105499313Missense_MutationnovelK42N0.43
UCECchr105499168Missense_MutationNAD91N0.26
UCECchr105499174Missense_Mutationrs768112457A89T0.54

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.13330.19593
BRCAAMP0.2381.5549e-05
ESCADEL0.19570.041463
KIRCAMP0.02080.17403
LGGAMP0.11891.9574e-05
MESODEL0.32180.0040398
PAADDEL0.15220.169
STADDEL0.10430.13903
TGCTDEL0.440.055393

Survival Analysis
CancerP-value Q-value
MESO0.05

Kaplan-Meier Survival Analysis

UCS0.017

Kaplan-Meier Survival Analysis

HNSC0.0001

Kaplan-Meier Survival Analysis

SKCM0.00011

Kaplan-Meier Survival Analysis

PAAD0.029

Kaplan-Meier Survival Analysis

BLCA0.022

Kaplan-Meier Survival Analysis

CESC0.015

Kaplan-Meier Survival Analysis

LUAD0.0098

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000178372 (Gene tree)
Gene ID
51806
Gene Symbol
CALML5
Alias
CLSP
Full Name
calmodulin like 5
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
876 bases
Position
chr10:5,498,695-5,499,570
Accession
18180
RBP type
non-canonical RBP
Summary
This gene encodes a novel calcium binding protein expressed in the epidermis and related to the calmodulin family of calcium binding proteins. Functional studies with recombinant protein demonstrate it does bind calcium and undergoes a conformational change when it does so. Abundant expression is detected only in reconstructed epidermis and is restricted to differentiating keratinocytes. In addition, it can associate with transglutaminase 3, shown to be a key enzyme in the terminal differentiation of keratinocytes. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000380332CALML5-201859-ENSP00000369689146 (aa)-Q9NZT1
Gene Model
Click here to download ENSG00000178372's gene model file
Pathways
Pathway IDPathway NameSource
hsa04014Ras signaling pathwayKEGG
hsa04015Rap1 signaling pathwayKEGG
hsa04020Calcium signaling pathwayKEGG
hsa04022cGMP-PKG signaling pathwayKEGG
hsa04024cAMP signaling pathwayKEGG
hsa04070Phosphatidylinositol signaling systemKEGG
hsa04114Oocyte meiosisKEGG
hsa04218Cellular senescenceKEGG
hsa04261Adrenergic signaling in cardiomyocytesKEGG
hsa04270Vascular smooth muscle contractionKEGG
hsa04371Apelin signaling pathwayKEGG
hsa04625C-type lectin receptor signaling pathwayKEGG
hsa04713Circadian entrainmentKEGG
hsa04720Long-term potentiationKEGG
hsa04722Neurotrophin signaling pathwayKEGG
hsa04728Dopaminergic synapseKEGG
hsa04740Olfactory transductionKEGG
hsa04744PhototransductionKEGG
hsa04750Inflammatory mediator regulation of TRP channelsKEGG
hsa04910Insulin signaling pathwayKEGG
hsa04912GnRH signaling pathwayKEGG
hsa04915Estrogen signaling pathwayKEGG
hsa04916MelanogenesisKEGG
hsa04921Oxytocin signaling pathwayKEGG
hsa04922Glucagon signaling pathwayKEGG
hsa04924Renin secretionKEGG
hsa04925Aldosterone synthesis and secretionKEGG
hsa04970Salivary secretionKEGG
hsa04971Gastric acid secretionKEGG
hsa05010Alzheimer diseaseKEGG
hsa05031Amphetamine addictionKEGG
hsa05034AlcoholismKEGG
hsa05133PertussisKEGG
hsa05152TuberculosisKEGG
hsa05163Human cytomegalovirus infectionKEGG
hsa05167Kaposi sarcoma-associated herpesvirus infectionKEGG
hsa05170Human immunodeficiency virus 1 infectionKEGG
hsa05200Pathways in cancerKEGG
hsa05214GliomaKEGG
hsa05418Fluid shear stress and atherosclerosisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000178372's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005509calcium ion binding21873635.IBAFunction
GO:0005509calcium ion binding-IEAFunction
GO:0005576extracellular region-TASComponent
GO:0007165signal transduction10777582.TASProcess
GO:0008544epidermis development10777582.TASProcess
GO:0019722calcium-mediated signaling21873635.IBAProcess
GO:0043312neutrophil degranulation-TASProcess
GO:1904813ficolin-1-rich granule lumen-TASComponent
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