EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1948715301Missense_MutationNAS129C0.21
BLCAchr1948713378SilentnovelL379L0.19
BLCAchr1948713719Missense_Mutationrs745349713D321N0.31
BRCAchr1948716786Intronnovel0.26
BRCAchr1948713738Silentrs776354357L314L0.05
CESCchr1948713497In_Frame_InsnovelS339_P340insRMK0.34
CESCchr1948713498In_Frame_InsnovelS339_P340insNLCSPLTIIT0.24
CESCchr1948713410Missense_MutationnovelP369T0.31
CESCchr19487129963'UTRnovel0.43
COADchr1948715871Intronnovel0.33
COADchr1948719029Translation_Start_SitenovelM1?0.36
COADchr1948714848Frame_Shift_Insrs765520198H163Tfs*90.21
COADchr1948715698Missense_MutationnovelA56V0.38
COADchr1948715378SilentNAY103Y0.4
COADchr1948713495Frame_Shift_DelNAS341Pfs*390.29
COADchr1948715708Missense_MutationnovelS53A0.12
COADchr1948716786Intronnovel0.23
DLBCchr1948716860Intronnovel0.46
ESCAchr1948715323Missense_MutationnovelA122T0.18
GBMchr1948713756SilentnovelR308R0.11
HNSCchr1948713314Missense_MutationnovelD401H0.44
HNSCchr1948713967Missense_MutationnovelP268A0.21
HNSCchr1948713893Missense_MutationnovelE292D0.09
LIHCchr1948716786Intronnovel0.22
LUSCchr1948714553Missense_MutationnovelE179G0.83SAP
LUSCchr1948713337Missense_MutationnovelS393N0.23
OVchr1948713316Missense_MutationNAS400F0.53
PRADchr1948713912Missense_MutationNAS286L0.13
READchr1948714905Missense_MutationNAM143I0.29
READchr1948713954Missense_MutationNAP272R0.58
READchr1948715418Missense_MutationNAR90M0.18
SARCchr1948713325Missense_MutationnovelA397D0.07
SKCMchr1948713419Missense_MutationNAP366S0.39
SKCMchr1948713959SilentnovelP270P0.54
SKCMchr1948713987Missense_MutationNAG261E0.42
SKCMchr1948713532Missense_Mutationrs770569678P328L0.48
STADchr1948713989SilentnovelP260P0.06
STADchr1948714848Frame_Shift_Insrs765520198H163Tfs*90.26
STADchr1948713339Frame_Shift_DelnovelS393Afs*270.37
STADchr1948714848Frame_Shift_Insrs765520198H163Tfs*90.37
UCECchr1948713320Missense_MutationNAL399V0.39
UCECchr1948713457Missense_MutationnovelS353Y0.17
UCECchr1948715701Missense_MutationNAT55M0.2
UCECchr1948719026SilentNAT2T0.27
UCECchr1948715905Intronnovel0.58
UCECchr1948715706SilentNAS53S0.23
UCECchr19487132653'UTRnovel0.14
UCECchr19487190405'UTRnovel0.18
UCECchr1948718999Missense_MutationnovelQ11H0.64
UCECchr1948715707Missense_Mutationrs759687984S53L0.22
UCECchr1948713546SilentnovelP323P0.46
UCECchr19487130463'UTRnovel0.39
UCECchr1948715403Missense_MutationnovelR95K0.31
UCECchr1948714849Frame_Shift_Delrs752869239P162Hfs*140.38
UCECchr1948715324SilentnovelS121S0.52
UCECchr1948715810Intronnovel0.54
UCECchr1948714849Frame_Shift_Delrs752869239P162Hfs*140.37
UCECchr1948715747Missense_MutationnovelI40V0.07
UCECchr1948713339Frame_Shift_DelnovelS393Afs*270.5
UCECchr1948713374Missense_MutationNAG381R0.45
UCECchr1948715630Missense_MutationnovelK79E0.36
UCECchr1948713860Missense_MutationnovelQ303H0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.09150.027508
KIRPDEL0.04860.054726
LUADDEL0.25581.5526e-05
LUSCDEL0.21161.1877e-06
OVDEL0.49052.441e-17
PAADDEL0.0870.035089
READDEL0.09090.23023
TGCTDEL0.28670.0046229
UCSDEL0.23210.12448

Survival Analysis
CancerP-value Q-value
KIRC0.029

Kaplan-Meier Survival Analysis

MESO0.0059

Kaplan-Meier Survival Analysis

HNSC0.02

Kaplan-Meier Survival Analysis

LUSC0.0034

Kaplan-Meier Survival Analysis

KIRP0.0075

Kaplan-Meier Survival Analysis

PAAD0.049

Kaplan-Meier Survival Analysis

PCPG0.041

Kaplan-Meier Survival Analysis

BLCA0.0086

Kaplan-Meier Survival Analysis

UCEC0.016

Kaplan-Meier Survival Analysis

LIHC0.0002

Kaplan-Meier Survival Analysis

UVM0.00013

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000176909 (Gene tree)
Gene ID
284358
Gene Symbol
MAMSTR
Alias
MASTR|FLJ36070
Full Name
MEF2 activating motif and SAP domain containing transcriptional regulator
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
7,057 bases
Position
chr19:48,712,722-48,719,778
Accession
26689
RBP type
canonical RBP
Summary
MAMSTR (MEF2 Activating Motif And SAP Domain Containing Transcriptional Regulator) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and obsolete transcription factor activity, RNA polymerase II transcription factor binding. An important paralog of this gene is MTDH.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000349192SAPPF02037.273.2e-0811
ENSP00000324175SAPPF02037.274.6e-0811
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000318083MAMSTR-2011837XM_011526808ENSP00000324175415 (aa)XP_011525110Q6ZN01
ENST00000356751MAMSTR-2021825XM_011526807ENSP00000349192312 (aa)XP_011525109Q6ZN01
ENST00000599703MAMSTR-205714-ENSP00000469544219 (aa)-M0QY28
ENST00000594582MAMSTR-2031693XM_011526809ENSP00000471590247 (aa)XP_011525111Q6ZN01
ENST00000595591MAMSTR-204415-ENSP0000046912711 (aa)-M0QXF1
Gene Model
Click here to download ENSG00000176909's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000176909rs3812541948717947?Serum alkaline phosphatase levels29403010[0.024-0.049] unit decrease novel0.036126122EFO_0004533
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000176909's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000176909MAMSTR10092.913ENSAMEG00000014802MAMSTR10076.180Ailuropoda_melanoleuca
ENSG00000176909MAMSTR9988.387ENSANAG00000025139MAMSTR7880.739Aotus_nancymaae
ENSG00000176909MAMSTR10081.132ENSBTAG00000011617MAMSTR10078.522Bos_taurus
ENSG00000176909MAMSTR10091.566ENSCJAG00000000326MAMSTR10091.566Callithrix_jacchus
ENSG00000176909MAMSTR10081.875ENSCAFG00000003914MAMSTR10077.397Canis_familiaris
ENSG00000176909MAMSTR10078.344ENSCAFG00020026340MAMSTR10072.600Canis_lupus_dingo
ENSG00000176909MAMSTR10078.616ENSCHIG00000017698MAMSTR10076.429Capra_hircus
ENSG00000176909MAMSTR10087.711ENSTSYG00000026265MAMSTR10087.470Carlito_syrichta
ENSG00000176909MAMSTR10070.433ENSCPOG00000031881MAMSTR10071.154Cavia_porcellus
ENSG00000176909MAMSTR10093.253ENSCCAG00000029438MAMSTR10093.253Cebus_capucinus
ENSG00000176909MAMSTR10096.154ENSCATG00000031813MAMSTR10096.154Cercocebus_atys
ENSG00000176909MAMSTR10072.600ENSCLAG00000005822MAMSTR10071.897Chinchilla_lanigera
ENSG00000176909MAMSTR10096.635ENSCSAG00000002823MAMSTR10096.635Chlorocebus_sabaeus
ENSG00000176909MAMSTR10097.108ENSCANG00000016741MAMSTR10097.108Colobus_angolensis_palliatus
ENSG00000176909MAMSTR10072.115ENSCGRG00001018713Mamstr10072.488Cricetulus_griseus_chok1gshd
ENSG00000176909MAMSTR10074.473ENSDNOG00000034507MAMSTR10076.995Dasypus_novemcinctus
ENSG00000176909MAMSTR10064.789ENSDORG00000001229Mamstr10064.169Dipodomys_ordii
ENSG00000176909MAMSTR6596.774ENSETEG00000017393-6596.774Echinops_telfairi
ENSG00000176909MAMSTR9976.923ENSEASG00005004688MAMSTR9277.644Equus_asinus_asinus
ENSG00000176909MAMSTR9982.637ENSECAG00000020390MAMSTR9981.490Equus_caballus
ENSG00000176909MAMSTR8979.928ENSEEUG00000011877MAMSTR9974.737Erinaceus_europaeus
ENSG00000176909MAMSTR10081.410ENSFCAG00000007361MAMSTR10081.731Felis_catus
ENSG00000176909MAMSTR10099.679ENSGGOG00000001237MAMSTR10099.679Gorilla_gorilla
ENSG00000176909MAMSTR10071.971ENSHGLG00000016428MAMSTR10069.596Heterocephalus_glaber_female
ENSG00000176909MAMSTR10072.530ENSHGLG00100005311MAMSTR10070.120Heterocephalus_glaber_male
ENSG00000176909MAMSTR10087.838ENSSTOG00000020068MAMSTR10083.894Ictidomys_tridecemlineatus
ENSG00000176909MAMSTR10073.494ENSJJAG00000017177Mamstr10069.639Jaculus_jaculus
ENSG00000176909MAMSTR10081.081ENSLAFG00000017394MAMSTR10078.571Loxodonta_africana
ENSG00000176909MAMSTR10096.867ENSMFAG00000045502MAMSTR10096.867Macaca_fascicularis
ENSG00000176909MAMSTR10095.904ENSMNEG00000041978MAMSTR10095.904Macaca_nemestrina
ENSG00000176909MAMSTR10070.843ENSMAUG00000013527Mamstr10072.048Mesocricetus_auratus
ENSG00000176909MAMSTR10086.984ENSMICG00000013193MAMSTR10086.603Microcebus_murinus
ENSG00000176909MAMSTR9975.714ENSMOCG00000020029Mamstr9975.714Microtus_ochrogaster
ENSG00000176909MAMSTR8446.454ENSMODG00000002229-8042.586Monodelphis_domestica
ENSG00000176909MAMSTR10075.000MGP_CAROLIEiJ_G0029733-10075.467Mus_caroli
ENSG00000176909MAMSTR10074.299ENSMUSG00000042918Mamstr10074.533Mus_musculus
ENSG00000176909MAMSTR10074.941MGP_PahariEiJ_G0012958Mamstr10074.941Mus_pahari
ENSG00000176909MAMSTR10073.721MGP_SPRETEiJ_G0030831-10073.953Mus_spretus
ENSG00000176909MAMSTR10079.688ENSMPUG00000003791MAMSTR10076.484Mustela_putorius_furo
ENSG00000176909MAMSTR10077.541ENSNGAG00000016579Mamstr10078.014Nannospalax_galili
ENSG00000176909MAMSTR10063.014ENSNLEG00000004605-10086.722Nomascus_leucogenys
ENSG00000176909MAMSTR8453.759ENSMEUG00000015223-8852.941Notamacropus_eugenii
ENSG00000176909MAMSTR8867.033ENSOPRG00000015106MAMSTR6573.260Ochotona_princeps
ENSG00000176909MAMSTR10065.321ENSODEG00000017655MAMSTR10063.700Octodon_degus
ENSG00000176909MAMSTR7293.548ENSOCUG00000021342-10060.857Oryctolagus_cuniculus
ENSG00000176909MAMSTR10081.150ENSOGAG00000003568MAMSTR10078.846Otolemur_garnettii
ENSG00000176909MAMSTR9683.784ENSOARG00000012032MAMSTR10077.367Ovis_aries
ENSG00000176909MAMSTR10082.372ENSPPRG00000004054MAMSTR10081.731Panthera_pardus
ENSG00000176909MAMSTR10099.679ENSPTRG00000011253MAMSTR10099.679Pan_troglodytes
ENSG00000176909MAMSTR10096.867ENSPANG00000022678MAMSTR10096.867Papio_anubis
ENSG00000176909MAMSTR10040.050ENSPCIG00000001155-10039.400Phascolarctos_cinereus
ENSG00000176909MAMSTR10098.857ENSPPYG00000010591-10097.436Pongo_abelii
ENSG00000176909MAMSTR9779.538ENSPCAG00000001125-10077.558Procavia_capensis
ENSG00000176909MAMSTR10088.571ENSPCOG00000023398MAMSTR10087.857Propithecus_coquereli
ENSG00000176909MAMSTR10075.962ENSPVAG00000009535MAMSTR10072.289Pteropus_vampyrus
ENSG00000176909MAMSTR10074.353ENSRNOG00000024580Mamstr10074.588Rattus_norvegicus
ENSG00000176909MAMSTR10097.115ENSRBIG00000043644MAMSTR10097.115Rhinopithecus_bieti
ENSG00000176909MAMSTR10097.349ENSRROG00000033087MAMSTR10097.349Rhinopithecus_roxellana
ENSG00000176909MAMSTR10089.157ENSSBOG00000028762MAMSTR10088.675Saimiri_boliviensis_boliviensis
ENSG00000176909MAMSTR10077.885ENSSARG00000002931MAMSTR10077.218Sorex_araneus
ENSG00000176909MAMSTR10083.387ENSSSCG00000003143MAMSTR10083.254Sus_scrofa
ENSG00000176909MAMSTR5586.705ENSTBEG00000012239-5586.705Tupaia_belangeri
ENSG00000176909MAMSTR9784.768ENSTTRG00000014557MAMSTR10077.831Tursiops_truncatus
ENSG00000176909MAMSTR10079.630ENSUAMG00000010490MAMSTR10076.852Ursus_americanus
ENSG00000176909MAMSTR10081.410ENSVVUG00000023147MAMSTR10077.209Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001085RNA polymerase II transcription factor binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0010831positive regulation of myotube differentiation-IEAProcess
GO:0045944positive regulation of transcription by RNA polymerase II-IEAProcess
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us