EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
22438565Gender influences the class III and V β-tubulin ability to predict poor outcome in colorectal cancer.Clin Cancer Res2012 May 15Mariani Mdoi: 10.1158/1078-0432.CCR-11-2318

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1812308793Missense_MutationnovelS55L0.5
BLCAchr1812326038Missense_MutationNAD417N0.04
BLCAchr1812325477Frame_Shift_InsnovelA231Dfs*200.41
BLCAchr1812308770SilentnovelI47I0.1
BLCAchr1812325109Missense_MutationnovelT107R0.79
BLCAchr1812308762Missense_MutationNAE45K0.18
BLCAchr1812325599Silentrs776288663F270F0.38
BLCAchr1812325867Missense_MutationNAG360S0.14
BLCAchr1812308767Frame_Shift_DelnovelI47Tfs*210.09
BLCAchr1812325381Missense_MutationnovelE198K0.42
BLCAchr18123297933'Flanknovel0.23
BRCAchr1812325961Missense_Mutationrs763504507R391H0.15
BRCAchr18123261533'UTRnovel0.34
CESCchr1812325260Silentrs758140585E157E0.16
CESCchr1812325245SilentnovelI152I0.25
CESCchr1812308749SilentnovelS40S0.36
CESCchr1812325218Silentrs753362806T143T0.34
CESCchr18123291553'Flanknovel0.25
COADchr1812325519Missense_MutationNAG244C0.35
COADchr1812325540Missense_Mutationrs756545880R251C0.26
COADchr1812325563SilentnovelV258V0.25
COADchr1812325724Missense_MutationNAT312I0.33
COADchr1812325602Silentrs575654137A271A0.3
COADchr1812325770Silentrs758456776D327D0.22
COADchr1812325207Missense_MutationnovelG140R0.25
COADchr1812325879Missense_MutationnovelA364T0.06
COADchr1812325116SilentnovelG109G0.15
ESCAchr1812325139Missense_MutationnovelL117R0.25
ESCAchr1812325140SilentnovelL117L0.25
ESCAchr1812310964Missense_MutationnovelA63V0.67
ESCAchr1812310965Silentrs34553814A63A0.65
GBMchr1812325906Missense_MutationnovelA373P0.23
GBMchr1812308685Splice_SitenovelX20_splice0.12
GBMchr1812308646Intronnovel0.42
GBMchr1812310965Silentrs34553814A63A0.51
GBMchr1812325236Silentrs754393310T149T0.54
GBMchr1812325759Nonsense_MutationnovelK324*0.43
GBMchr1812308773Silentrs760234318N48N0.18
GBMchr1812325796Missense_MutationnovelK336R0.1
HNSCchr1812311046SilentnovelF90F0.31
HNSCchr1812325644SilentnovelT285T0.26
HNSCchr1812310987Missense_MutationnovelG71S0.07
HNSCchr1812325304Missense_MutationnovelS172L0.5
HNSCchr1812325402Missense_Mutationrs746302836E205K0.15
KIRCchr1812324970Intronnovel0.2
LGGchr1812311034SilentnovelR86R0.22
LGGchr1812325232Missense_MutationnovelG148D0.08
LGGchr1812325590Missense_MutationnovelM267I0.39
LIHCchr1812325367Missense_MutationNAV193E0.82
LIHCchr1812310994Missense_MutationnovelM73K0.45
LIHCchr1812308600Intronnovel0.26
LUADchr18123297953'Flanknovel0.11
LUADchr1812326018Missense_MutationnovelE410A0.04
LUADchr1812325225Missense_MutationnovelG146C0.08
LUADchr1812325518Silentrs756946980P243P0.15
LUADchr1812325390Missense_MutationnovelC201S0.05
LUADchr1812326120In_Frame_InsnovelI444delinsMR0.07
LUADchr1812325203SilentNAS138S0.36
LUSCchr1812325410Silentrs780101902L207L0.2
LUSCchr1812308714Missense_MutationnovelG29R0.61
LUSCchr1812325510Missense_MutationnovelR241C0.58
LUSCchr1812325246Missense_MutationnovelS153C0.36
LUSCchr1812325638SilentNAA283A0.22
LUSCchr1812311001SilentNAS75S0.26
LUSCchr1812325623Missense_MutationnovelS278R0.08
MESOchr1812325866Silentrs200462932R359R0.69
OVchr1812308668Intronnovel0.24
PAADchr1812325895Missense_MutationnovelG369D0.19
PRADchr1812325162Missense_MutationNAE125K0.24
READchr1812325983Missense_MutationnovelF398L0.17
READchr1812326121Silentrs376872570I444I0.15
SKCMchr1812326117Missense_MutationnovelE443A0.07
SKCMchr1812325672Missense_MutationNAD295N0.2
SKCMchr1812325867Missense_MutationNAG360S0.39
SKCMchr1812325643Missense_MutationnovelT285I0.81
SKCMchr1812325644Silentrs200435931T285T0.84
SKCMchr1812325741Missense_MutationNAR318C0.21
SKCMchr1812325657Missense_MutationNAT290A0.28
SKCMchr1812325113SilentNAE108E0.53
SKCMchr1812325369Nonsense_MutationNAE194*0.31
SKCMchr1812325202Missense_MutationNAS138L0.31
SKCMchr1812325478Missense_MutationnovelS230F0.55
SKCMchr1812325479SilentnovelS230S0.56
SKCMchr1812325307Missense_MutationNAP173L0.35
SKCMchr1812324999Intronnovel0.31
STADchr1812325617Silentrs376782121R276R0.48
STADchr1812308307SilentnovelV5V0.25
STADchr1812325605Silentrs140883153P272P0.24
STADchr1812325852Missense_Mutationrs751476032D355N0.2
STADchr1812325591Missense_MutationNAP268S0.13
STADchr1812325460Missense_MutationNAD224V0.3
STADchr1812325490Missense_MutationnovelS234T0.46
STADchr1812325151Missense_Mutationrs368245437R121Q0.34
STADchr1812325750Missense_MutationnovelM321V0.28
STADchr1812311001SilentNAS75S0.42
STADchr18123261673'UTRrs7454372890.4
STADchr1812326001SilentNAD404D0.24
STADchr1812325561Missense_MutationNAV258M0.16
STADchr1812325878Missense_MutationnovelM363I0.05
STADchr1812311006Missense_Mutationrs571214765R77Q0.5
STADchr1812325336Missense_MutationnovelY183H0.4
STADchr1812325184Missense_MutationNAG132D0.15
THYMchr1812308716Silentrs376972319G29G0.12
UCECchr1812325599Silentrs776288663F270F0.27
UCECchr18123263493'UTRnovel0.45
UCECchr18123264873'UTRnovel0.41
UCECchr1812325381Missense_MutationnovelE198K0.41
UCECchr1812308759Missense_MutationnovelL44M0.26
UCECchr1812325880Missense_MutationnovelA364V0.38
UCECchr1812325293Silentrs777054234S168S0.22
UCECchr1812325591Missense_MutationNAP268S0.42
UCECchr1812325506Silentrs763720238S239S0.23
UCECchr1812325671Silentrs778849487F294F0.11
UCECchr1812325693Missense_MutationNAA302T0.39
UCECchr1812310984Missense_MutationnovelP70S0.2
UCECchr1812325524SilentnovelQ245Q0.3
UCECchr1812325558Missense_MutationnovelM257V0.42
UCECchr1812325200Missense_MutationnovelH137Q0.33
UCECchr1812325735Missense_MutationnovelV316M0.33
UCECchr1812325986SilentnovelT399T0.39
UCECchr1812324895Intronnovel0.25
UCECchr1812308708Nonsense_MutationnovelE27*0.38
UCECchr1812325904Missense_MutationnovelT372M0.58
UCECchr1812325603Missense_MutationnovelP272S0.44
UCECchr1812325352Missense_MutationNAS188L0.41
UCECchr1812325676Missense_MutationNAA296V0.29
UCECchr1812308704SilentnovelS25S0.32
UCECchr1812325446SilentnovelT219T0.29
UCECchr18123264603'UTRnovel0.36
UCECchr1812324877Intronnovel0.67
UCECchr1812325410SilentnovelL207L0.33
UCECchr1812326085SilentNAD432D0.28
UCECchr1812326038Missense_MutationNAD417N0.25
UCECchr1812325400Missense_MutationnovelN204S0.11
UCECchr1812325704Silentrs145635323P305P0.42
UCECchr1812325317Silentrs775559623S176S0.4
UCECchr1812310947Missense_MutationnovelQ57H0.09
UCECchr1812311007SilentnovelR77R0.55
UCECchr1812325605Silentrs140883153P272P0.11
UCECchr1812325698SilentnovelC303C0.27
UCECchr1812325779Missense_Mutationrs777748559M330I0.17
UCECchr1812325511Missense_MutationnovelR241H0.48
UCECchr1812326116Missense_MutationnovelE443K0.26
UCECchr18123264893'UTRnovel0.34

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
LAMLDEL0.04190.020884

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.015

Kaplan-Meier Survival Analysis

MESO0.00049

Kaplan-Meier Survival Analysis

ACC0.00011

Kaplan-Meier Survival Analysis

HNSC0.023

Kaplan-Meier Survival Analysis

SKCM0.0036

Kaplan-Meier Survival Analysis

COAD0.0096

Kaplan-Meier Survival Analysis

BLCA0.00012

Kaplan-Meier Survival Analysis

CESC0.0079

Kaplan-Meier Survival Analysis

LAML0.026

Kaplan-Meier Survival Analysis

UCEC0.014

Kaplan-Meier Survival Analysis

LUAD0.024

Kaplan-Meier Survival Analysis

UVM0.0028

Kaplan-Meier Survival Analysis

OV0.033

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000176014 (Gene tree)
Gene ID
84617
Gene Symbol
TUBB6
Alias
MGC4083|HsT1601
Full Name
tubulin beta 6 class V
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
36,652 bases
Position
chr18:12,307,669-12,344,320
Accession
20776
RBP type
non-canonical RBP
Summary
(Tubulin Beta 6 Class V) is a Protein Coding gene. Diseases associated with TUBB6 include Facial Palsy, Congenital, With Ptosis And Velopharyngeal Dysfunction and Tubulin, Beta. Among its related pathways are Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding and Regulation of CFTR activity (norm and CF). Gene Ontology (GO) annotations related to this gene include GTP binding and structural constituent of cytoskeleton. An important paralog of this gene is TUBB3.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000591208TUBB6-2111492-ENSP00000466849136 (aa)-K7EN98
ENST00000591909TUBB6-2131017-ENSP00000465040104 (aa)-K7EJ64
ENST00000587204TUBB6-206408--- (aa)--
ENST00000590967TUBB6-210430-ENSP00000465386115 (aa)-K7EJZ4
ENST00000592683TUBB6-214481-ENSP00000467969104 (aa)-K7EQT3
ENST00000586653TUBB6-203788-ENSP0000046882096 (aa)-K7ESQ3
ENST00000590693TUBB6-209524-ENSP00000465891130 (aa)-K7EL29
ENST00000586691TUBB6-204359-ENSP0000046544831 (aa)-K7EK43
ENST00000590103TUBB6-2071075-ENSP00000468777338 (aa)-K7ESM5
ENST00000591463TUBB6-212485-ENSP00000468571116 (aa)-K7ES63
ENST00000317702TUBB6-2012064-ENSP00000318697446 (aa)-Q9BUF5
ENST00000586810TUBB6-2051493-ENSP00000467348141 (aa)-K7EPE5
ENST00000590388TUBB6-208576-ENSP00000468179110 (aa)-K7ERA8
ENST00000417736TUBB6-2022163--- (aa)--
Gene Model
Click here to download ENSG00000176014's gene model file
Pathways
Pathway IDPathway NameSource
hsa04145PhagosomeKEGG
hsa04540Gap junctionKEGG
hsa05130Pathogenic Escherichia coli infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000176014's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000226microtubule cytoskeleton organization21873635.IBAProcess
GO:0000278mitotic cell cycle21873635.IBAProcess
GO:0003674molecular_function-NDFunction
GO:0003924GTPase activity-IEAFunction
GO:0005200structural constituent of cytoskeleton21873635.IBAFunction
GO:0005525GTP binding21873635.IBAFunction
GO:0005634nucleus21630459.HDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005874microtubule21873635.IBAComponent
GO:0005874microtubule21525035.IDAComponent
GO:0007017microtubule-based process21873635.IBAProcess
GO:0070062extracellular exosome19056867.23533145.HDAComponent
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