EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
25314918Relevance of LIG4 gene polymorphisms with cancer susceptibility: evidence from a meta-analysis.Sci Rep2014 Oct 15Xie Sdoi: 10.1038/srep06630.
21974800DNA repair gene polymorphisms and risk of early onset colorectal cancer in Lynch syndrome.Cancer Epidemiol2012 AprReeves SGdoi: 10.1016/j.canep.2011.09.003
25811031Associations of LIG4 and HSPB1 genetic polymorphisms with risk of radiation-induced lung injury in lung cancer patients treated with radiotherapy.Biomed Res Int2015Xu Fdoi: 10.1155/2015/860373
25605214DNA ligase4 as a prognostic marker in nasopharyngeal cancer patients treated with radiotherapy.Asian Pac J Cancer Prev2014Kim DH-
24722796The impact of functional LIG4 polymorphism on platinum-based chemotherapy response and survival in non-small cell lung cancer.Med Oncol2014 MayJiang YHdoi: 10.1007/s12032-014-0959-7
26134445Expression of DNA ligase IV is linked to poor prognosis and characterizes a subset of prostate cancers harboring TMPRSS2:ERG fusion and PTEN deletion.Oncol Rep2015 SepGrupp Kdoi: 10.3892/or.2015.4080
24282031Altered regulation of DNA ligase IV activity by aberrant promoter DNA methylation and gene amplification in colorectal cancer.Hum Mol Genet2014 Apr 15Kuhmann Cdoi: 10.1093/hmg/ddt599
20811692The role of common variants of non-homologous end-joining repair genes XRCC4, LIG4 and Ku80 in thyroid cancer risk.Oncol Rep2010 OctGomes BC-
27009971LIG4 mediates Wnt signalling-induced radioresistance.Nat Commun2016 Mar 24Jun Sdoi: 10.1038/ncomms10994.
18508926DNA-ligase IV and DNA-protein kinase play a critical role in deficient caspases activation in apoptosis-resistant cancer cells by using doxorubicin.Mol Biol Cell2008 AugFriesen Cdoi: 10.1091/mbc.E08-03-0306
22994770Lack of association between LIG4 gene polymorphisms and the risk of breast cancer: a HuGE review and meta-analysis.Asian Pac J Cancer Prev2012Zhou LP-
28976792Clinical and Genetic Risk Prediction of Subsequent CNS Tumors in Survivors of Childhood Cancer: A Report From the COG ALTE03N1 Study.J Clin Oncol2017 Nov 10Wang Xdoi: 10.1200/JCO.2017.74.7444

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr13108209950Missense_MutationnovelP440R0.7RNA_ligase
BLCAchr13108210901Missense_MutationnovelG123A0.33
BLCAchr13108208825Missense_Mutationrs574090677R815H0.28
BLCAchr13108208553Missense_MutationNAE906K0.32
BLCAchr13108208841Missense_MutationNAL810V0.32
BLCAchr13108209873Missense_MutationnovelI466F0.15
BLCAchr13108208632Missense_MutationnovelR879S0.21
BLCAchr13108208733Missense_Mutationrs778998772R846W0.57
BLCAchr13108209232SilentnovelE679E0.35
BLCAchr13108209495Missense_MutationNAE592K0.32
BRCAchr13108210437Missense_Mutationrs574912936R278C0.09RNA_ligase
BRCAchr13108210569Missense_MutationnovelG234R0.07
BRCAchr13108210110Missense_MutationNAE387K0.17RNA_ligase
BRCAchr13108209605Missense_MutationNAV555G0.21
BRCAchr13108211188SilentnovelQ27Q0.16
CESCchr13108210763Frame_Shift_DelnovelK169Rfs*70.22
CESCchr13108211041Missense_MutationNAE76D0.17
CESCchr13108211035Frame_Shift_InsnovelR79Efs*70.15
CESCchr13108209883SilentNAL462L0.62
CESCchr13108209493SilentnovelE592E0.29
CESCchr13108209316Silentrs780588115N651N0.39
CESCchr13108208863Frame_Shift_DelnovelR802Lfs*250.15
CESCchr13108208864In_Frame_InsnovelR802delinsLPQW0.15
CESCchr13108208817Missense_Mutationrs534543979V818I0.2
CESCchr13108208667Missense_MutationNAD868N0.38
CESCchr13108208804Missense_Mutationrs141441003S822L0.13
CESCchr13108209389Frame_Shift_DelnovelK627Sfs*80.17
CESCchr13108210080Missense_MutationNAP397S0.71RNA_ligase
CESCchr13108208827SilentNAR814R0.29
COADchr13108208858Missense_MutationNAS804F0.37
COADchr13108209227Missense_MutationNAR681I0.47
COADchr13108208941Missense_MutationNAE776D0.24
COADchr13108208963Missense_Mutationrs761592929T769I0.27
COADchr13108209178Silentrs184527984T697T0.22
COADchr13108209439Silentrs768563098L610L0.31
COADchr131082085193'UTRnovel0.07
COADchr13108209883Frame_Shift_InsnovelL462Ffs*120.14
COADchr13108210763Frame_Shift_DelnovelK169Rfs*70.11
COADchr13108208733Missense_Mutationrs778998772R846W0.54
COADchr13108209478Silentrs144253952D597D0.21
COADchr13108208821Missense_MutationNAH816Q0.22
COADchr131082085003'UTRnovel0.25
COADchr13108210319Missense_MutationnovelN317S0.09RNA_ligase
COADchr13108209015Nonsense_MutationNAE752*0.31
COADchr13108209722Missense_MutationNAY516C0.17
ESCAchr131082085003'UTRnovel0.28
ESCAchr13108210962Nonsense_MutationnovelG103*0.27
ESCAchr13108209007Missense_MutationnovelF754L0.5
GBMchr13108209530Missense_Mutationrs146616552R580Q0.32
GBMchr13108210391Missense_Mutationrs775560383R293Q0.53RNA_ligase
GBMchr13108208972Missense_MutationnovelF766C0.08
HNSCchr13108211043Missense_MutationnovelE76K0.1
HNSCchr13108209316Silentrs780588115N651N0.13
HNSCchr13108209624Missense_MutationNAI549F0.71
HNSCchr13108209384Nonsense_MutationNAK629*0.31
HNSCchr13108208598Missense_MutationnovelE891Q0.34
HNSCchr13108210311Missense_MutationnovelK320Q0.54RNA_ligase
HNSCchr13108209405Missense_MutationnovelE622K0.26
HNSCchr13108211234Missense_MutationnovelS12C0.22
HNSCchr13108208782SilentnovelL829L0.2
KIRCchr13108208715Missense_MutationNAV852I0.34
LAMLchr13108210087SilentnovelT394T0.11
LGGchr13108211225Missense_MutationNAP15R0.19
LGGchr13108208899Silentrs748625382E790E0.33
LGGchr13108209988Missense_MutationnovelE427D0.1RNA_ligase
LIHCchr13108211181Missense_MutationnovelK30E0.16
LIHCchr131082112745'UTRrs5769725190.09
LUADchr13108209745SilentnovelS508S0.23
LUADchr13108209940SilentnovelR443R0.2
LUADchr13108209936Nonsense_MutationNAE445*0.35RNA_ligase
LUADchr13108208598Missense_MutationnovelE891K0.14
LUADchr13108210995Missense_MutationnovelL92V0.18
LUADchr13108210823Missense_MutationNAN149I0.71
LUADchr13108210825SilentNAV148V0.69
LUADchr13108209904SilentnovelV455V0.04
LUADchr13108209432Missense_MutationnovelK613E0.31
LUADchr13108209237SilentNAL678L0.19
LUADchr13108208591Missense_MutationNAW893L0.3
LUADchr13108209006Missense_MutationnovelA755S0.13
LUADchr13108209175SilentnovelY698Y0.23
LUADchr13108209208SilentNAG687G0.37
LUADchr13108210062Missense_MutationnovelV403L0.27RNA_ligase
LUADchr13108210577Missense_MutationNAP231L0.24
LUADchr13108211233SilentnovelS12S0.44
LUSCchr13108208625Missense_MutationnovelF882I0.19
LUSCchr13108210115Missense_MutationnovelR385T0.76RNA_ligase
LUSCchr13108209836Missense_MutationnovelG478V0.16
LUSCchr13108209582Missense_MutationNAE563K0.38
LUSCchr13108208768Missense_MutationNAE834V0.36
LUSCchr13108209094Missense_MutationnovelW725C0.46
LUSCchr13108209577Silentrs750170673I564I0.33
LUSCchr13108211044SilentnovelL75L0.33
LUSCchr13108210058Missense_MutationnovelQ404L0.05RNA_ligase
LUSCchr13108210059Nonsense_MutationnovelQ404*0.06RNA_ligase
LUSCchr13108209955Nonsense_MutationnovelY438*0.04RNA_ligase
LUSCchr13108209717SilentnovelL518L0.65
LUSCchr13108209210Missense_MutationNAG687C0.38
LUSCchr13108210812Missense_MutationNAD153Y0.13
LUSCchr13108208884SilentNAL795L0.5
LUSCchr13108209888Missense_Mutationrs139785910E461K0.1
LUSCchr13108210922Missense_MutationnovelT116S0.2
LUSCchr13108211160Nonsense_MutationNAR37*0.38
LUSCchr13108210450Silentrs369808832K273K0.24
LUSCchr13108210343Missense_MutationNAG309V0.07RNA_ligase
LUSCchr13108210202Missense_MutationNAE356V0.17RNA_ligase
LUSCchr13108209958SilentNAI437I0.24
LUSCchr13108210133Missense_MutationnovelH379R0.51RNA_ligase
LUSCchr13108208667Missense_MutationNAD868Y0.15
LUSCchr13108209028Nonsense_MutationnovelC747*0.41
LUSCchr13108209210Missense_MutationNAG687C0.41
LUSCchr13108210057SilentNAQ404Q0.11
LUSCchr13108210232Frame_Shift_DelnovelG346Efs*100.5RNA_ligase
LUSCchr13108209842Missense_MutationnovelR476L0.17
LUSCchr13108209163SilentnovelA702A0.19
LUSCchr13108209188Missense_MutationnovelG694V0.29
LUSCchr13108209291Missense_MutationnovelE660K0.15
OVchr13108209035Missense_MutationnovelH745P0.07
OVchr13108209232Missense_MutationnovelE679D0.19
OVchr13108209794Missense_MutationNAP492L0.23
OVchr13108210690Frame_Shift_DelnovelI191*0.05
OVchr13108209324Missense_MutationNAL649F0.19
OVchr13108209480Missense_MutationNAD597Y0.12
OVchr13108208964Missense_MutationnovelT769S0.2
PAADchr13108208753Missense_MutationnovelA839D0.16
PAADchr13108209694Nonsense_MutationnovelY525*0.17
PAADchr13108210880Missense_MutationNAY130C0.2
PRADchr13108209103SilentNAK722K0.08
PRADchr13108211175Missense_Mutationrs770549827R32C0.27
PRADchr13108210134Missense_MutationNAH379Y0.13RNA_ligase
PRADchr13108209680Missense_Mutationrs766018641H530R0.24
PRADchr13108209438Missense_Mutationrs187323251A611T0.4
PRADchr13108210611Missense_MutationnovelD220N0.32
READchr13108211093Missense_MutationnovelD59G0.27
READchr13108209784SilentNAE495E0.93
READchr13108210156Missense_MutationnovelM371I0.1RNA_ligase
READchr13108211070Missense_MutationnovelA67T0.5
READchr13108209179Missense_MutationNAT697M0.15
READchr13108209268Missense_MutationNAM667I0.09
SARCchr13108210951SilentnovelA106A0.31
SARCchr13108209777Missense_MutationnovelS498P0.13
SARCchr13108209249Missense_MutationnovelP674A0.09
SKCMchr13108210544Frame_Shift_DelnovelL242Ifs*50.23
SKCMchr13108210578Missense_Mutationrs3093765P231S0.5
SKCMchr13108208784Silentrs765951039L829L0.18
SKCMchr13108211026Silentrs772726458A81A0.22
SKCMchr131082085223'UTRnovel0.63
SKCMchr13108211081Missense_MutationnovelS63F0.35
SKCMchr13108209768Missense_Mutationrs766039537H501Y0.49
SKCMchr13108209024Missense_Mutationrs138080550S749P0.16
SKCMchr13108210080Missense_MutationNAP397S0.44RNA_ligase
SKCMchr131082112815'UTRnovel0.19
SKCMchr13108208971SilentnovelF766F0.46
SKCMchr13108210079Missense_MutationnovelP397L0.48RNA_ligase
SKCMchr13108208708Missense_MutationNAS854F0.4
SKCMchr13108209240Missense_MutationNAD677N0.36
SKCMchr13108209450Missense_MutationnovelS607T0.37
SKCMchr13108211226Missense_Mutationrs201433057P15S0.74
STADchr13108209320Missense_MutationNAT650N0.33
STADchr13108209340SilentnovelH643H0.61
STADchr13108209531Missense_Mutationrs104894418R580G0.18
STADchr13108210303SilentNAD322D0.37
STADchr13108210081Missense_MutationnovelI396M0.21RNA_ligase
STADchr13108210762Frame_Shift_InsnovelS170Efs*130.33
STADchr13108209438Missense_Mutationrs187323251A611T0.21
STADchr13108209794Frame_Shift_Delrs767195999P492Lfs*210.13
STADchr13108209112Missense_MutationnovelD719E0.15
STADchr13108210960SilentNAG103G0.23
STADchr13108208657Missense_Mutationrs183928755R871H0.11
STADchr13108209405Missense_MutationnovelE622K0.05
STADchr13108208825Missense_Mutationrs574090677R815H0.08
STADchr13108209576Missense_Mutationrs140584260V565I0.46
STADchr13108209849Nonsense_MutationNAG474*0.26
THCAchr13108209357Missense_MutationNAI638V0.32
UCECchr13108209843Missense_Mutationrs747450004R476W0.42
UCECchr13108209605Missense_MutationNAV555G0.31
UCECchr13108211135Missense_MutationNAS45Y0.3
UCECchr13108208885Missense_MutationNAL795R0.3
UCECchr13108210757Missense_MutationNAL171R0.24
UCECchr13108210172Missense_MutationnovelV366A0.33RNA_ligase
UCECchr13108209613Silentrs543175901C552C0.31
UCECchr13108210164Missense_MutationnovelV369I0.41RNA_ligase
UCECchr13108209249Missense_MutationnovelP674S0.11
UCECchr13108208630Missense_MutationnovelR880I0.39
UCECchr13108211206SilentnovelS21S0.48
UCECchr13108209547Nonsense_MutationnovelC574*0.18
UCECchr13108209853SilentNAG472G0.24
UCECchr13108209178Silentrs184527984T697T0.35
UCECchr13108210987Missense_MutationNAI94M0.27
UCECchr13108210125Missense_MutationnovelL382M0.18RNA_ligase
UCECchr131082085243'UTRnovel0.4
UCECchr13108209067Missense_MutationNAS734R0.26
UCECchr13108208829Nonsense_Mutationrs104894419R814*0.73
UCECchr13108208920Missense_MutationnovelN783K0.35
UCECchr13108208922Missense_MutationnovelN783H0.45
UCECchr13108210442Missense_MutationnovelG276V0.39RNA_ligase
UCECchr13108209952SilentnovelK439K0.38
UCECchr13108208829Nonsense_Mutationrs104894419R814*0.44
UCECchr13108208610Missense_Mutationrs780983005K887E0.41
UCECchr13108210822Silentrs766338799N149N0.5
UCECchr13108209760SilentnovelL503L0.38
UCECchr13108210529Missense_MutationnovelK247R0.37
UCECchr13108210392Nonsense_MutationnovelR293*0.4RNA_ligase
UCECchr13108210090Frame_Shift_DelnovelF393Lfs*80.5RNA_ligase
UCECchr13108208624Missense_MutationnovelF882C0.38
UCECchr13108208803Silentrs752539259S822S0.32
UCECchr13108208865Missense_Mutationrs545309994R802W0.13
UCECchr13108211196Nonsense_Mutationrs753883369R25*0.4
UCECchr13108209827Missense_MutationnovelS481F0.29
UCECchr13108210287Missense_MutationNAL328I0.35RNA_ligase
UCECchr13108210755Missense_MutationnovelL172F0.34
UCECchr13108208687Missense_MutationnovelS861Y0.32
UCECchr13108208829Nonsense_Mutationrs104894419R814*0.46
UCECchr13108210790Missense_MutationnovelS160F0.34
UCECchr13108209905Missense_MutationnovelV455G0.03
UCECchr13108210396Missense_MutationNAF291L0.19RNA_ligase
UCECchr13108208624Missense_MutationnovelF882C0.12
UCECchr13108209206Missense_MutationnovelY688C0.08
UCECchr13108210090Frame_Shift_DelnovelF393Lfs*80.29RNA_ligase
UCECchr13108211009Missense_MutationNAT87N0.36
UCECchr13108210297SilentNAQ324Q0.17
UCECchr13108210134Missense_MutationNAH379Y0.29RNA_ligase
UCECchr13108208536Missense_MutationNAI911M0.53
UCECchr13108210747SilentNAL174L0.37
UCECchr13108209464Missense_MutationNAL602R0.28
UCECchr13108209653Nonsense_MutationNAL539*0.35
UCECchr13108210943Missense_MutationnovelL109R0.24
UCECchr131082084123'UTRnovel0.34
UCECchr13108209756Missense_Mutationrs375284799R505C0.22
UCECchr13108208942Missense_MutationnovelE776G0.18
UCECchr13108209179Missense_MutationNAT697M0.53
UCECchr13108208737Missense_MutationnovelE844D0.33
UCSchr13108210312Missense_MutationnovelF319L0.34RNA_ligase
UCSchr13108209078Missense_MutationnovelK731E0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BRCAAMP0.12310.012126
CESCAMP0.20680.00028304
GBMAMP0.03290.012908
LGGAMP0.03510.0023276
LIHCAMP0.14592.2054e-10
LUADAMP0.10850.027609
SKCMDEL0.18260.098096

Survival Analysis
CancerP-value Q-value
THYM0.01

Kaplan-Meier Survival Analysis

SKCM0.012

Kaplan-Meier Survival Analysis

PRAD0.0068

Kaplan-Meier Survival Analysis

LUSC0.027

Kaplan-Meier Survival Analysis

KIRP0.029

Kaplan-Meier Survival Analysis

PAAD0.013

Kaplan-Meier Survival Analysis

PCPG0.04

Kaplan-Meier Survival Analysis

BLCA0.04

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000174405 (Gene tree)
Gene ID
3981
Gene Symbol
LIG4
Alias
-
Full Name
DNA ligase 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
10,930 bases
Position
chr13:108,207,439-108,218,368
Accession
6601
RBP type
canonical RBP
Summary
The protein encoded by this gene is a DNA ligase that joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. This protein is essential for V(D)J recombination and DNA double-strand break (DSB) repair through nonhomologous end joining (NHEJ). This protein forms a complex with the X-ray repair cross complementing protein 4 (XRCC4), and further interacts with the DNA-dependent protein kinase (DNA-PK). Both XRCC4 and DNA-PK are known to be required for NHEJ. The crystal structure of the complex formed by this protein and XRCC4 has been resolved. Defects in this gene are the cause of LIG4 syndrome. Alternatively spliced transcript variants encoding the same protein have been observed. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000480814RNA_ligasePF09414.101.5e-0811
ENSP00000349393RNA_ligasePF09414.101.6e-0811
ENSP00000385955RNA_ligasePF09414.101.6e-0811
ENSP00000402030RNA_ligasePF09414.101.6e-0811
ENSP00000484288RNA_ligasePF09414.101.6e-0811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20926767Late-gestational systemic hypoxia leads to a similar early gene response in mouse placenta and developing brain.Am J Physiol Regul Integr Comp Physiol2010 DecTrollmann Rdoi: 10.1152/ajpregu.00697.2009
30994454Mutant huntingtin impairs PNKP and ATXN3, disrupting DNA repair and transcription.Elife2019 Apr 17Gao Rdoi: 10.7554/eLife.42988.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000614526LIG4-2053884XM_017020573ENSP00000480814844 (aa)XP_016876062A0A0C4DGV9
ENST00000442234LIG4-2033982XM_005254056ENSP00000402030911 (aa)XP_005254113P49917
ENST00000356922LIG4-2014096XM_017020564ENSP00000349393911 (aa)XP_016876053P49917
ENST00000611712LIG4-2044180XM_005254058ENSP00000484288911 (aa)XP_005254115P49917
ENST00000405925LIG4-2024065-ENSP00000385955911 (aa)-P49917
Gene Model
Click here to download ENSG00000174405's gene model file
Pathways
Pathway IDPathway NameSource
hsa03450Non-homologous end-joiningKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000174405Carotid Artery Diseases7.51545154846385E-617903303
ENSG00000174405Urinalysis2.03163196377317E-617903293
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000174405's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000174405LIG410066.588ENSAPOG00000000866lig49966.154Acanthochromis_polyacanthus
ENSG00000174405LIG410089.810ENSAMEG00000019685LIG49989.352Ailuropoda_melanoleuca
ENSG00000174405LIG49967.260ENSACIG00000018309lig49966.997Amphilophus_citrinellus
ENSG00000174405LIG410066.706ENSAOCG00000011768lig49966.154Amphiprion_ocellaris
ENSG00000174405LIG410066.825ENSAPEG00000017815lig49966.264Amphiprion_percula
ENSG00000174405LIG410066.825ENSATEG00000005583lig49966.189Anabas_testudineus
ENSG00000174405LIG410076.303ENSAPLG00000001673LIG49976.136Anas_platyrhynchos
ENSG00000174405LIG410076.422ENSACAG00000014566LIG49976.744Anolis_carolinensis
ENSG00000174405LIG410096.158ENSANAG00000012446LIG410096.158Aotus_nancymaae
ENSG00000174405LIG49966.548ENSACLG00000027051lig49966.007Astatotilapia_calliptera
ENSG00000174405LIG410065.640ENSAMXG00000008192lig49464.770Astyanax_mexicanus
ENSG00000174405LIG410089.243ENSBTAG00000015868LIG410089.243Bos_taurus
ENSG00000174405LIG410095.280ENSCJAG00000014689LIG410095.280Callithrix_jacchus
ENSG00000174405LIG410090.999ENSCAFG00000006031LIG410090.999Canis_familiaris
ENSG00000174405LIG410090.999ENSCAFG00020021230LIG410090.999Canis_lupus_dingo
ENSG00000174405LIG410088.913ENSCHIG00000001019LIG410088.913Capra_hircus
ENSG00000174405LIG410087.915ENSCAPG00000006284LIG49988.372Cavia_aperea
ENSG00000174405LIG410088.364ENSCPOG00000014266LIG410088.364Cavia_porcellus
ENSG00000174405LIG410095.499ENSCCAG00000019971LIG410095.499Cebus_capucinus
ENSG00000174405LIG410097.393ENSCATG00000021075LIG410097.146Cercocebus_atys
ENSG00000174405LIG410089.682ENSCLAG00000003376LIG410089.682Chinchilla_lanigera
ENSG00000174405LIG410097.393ENSCSAG00000000211LIG410097.256Chlorocebus_sabaeus
ENSG00000174405LIG410079.787ENSCPBG00000023291LIG410079.303Chrysemys_picta_bellii
ENSG00000174405LIG46746.573ENSCING00000009536-9545.310Ciona_intestinalis
ENSG00000174405LIG48346.088ENSCSAVG00000010336-9845.204Ciona_savignyi
ENSG00000174405LIG410097.393ENSCANG00000005805LIG410097.256Colobus_angolensis_palliatus
ENSG00000174405LIG410086.952ENSCGRG00001012072Lig410086.952Cricetulus_griseus_chok1gshd
ENSG00000174405LIG410086.952ENSCGRG00000013417Lig410086.952Cricetulus_griseus_crigri
ENSG00000174405LIG49767.718ENSCSEG00000013905lig49566.931Cynoglossus_semilaevis
ENSG00000174405LIG410067.180ENSCVAG00000007896lig49966.556Cyprinodon_variegatus
ENSG00000174405LIG410065.089ENSDARG00000060620lig49864.452Danio_rerio
ENSG00000174405LIG410090.132ENSDNOG00000000513LIG410090.132Dasypus_novemcinctus
ENSG00000174405LIG410088.913ENSDORG00000027303Lig410088.913Dipodomys_ordii
ENSG00000174405LIG49031.389FBgn0030506Lig49131.389Drosophila_melanogaster
ENSG00000174405LIG410084.024ENSETEG00000015563LIG410084.812Echinops_telfairi
ENSG00000174405LIG49943.878ENSEBUG00000014243lig49943.816Eptatretus_burgeri
ENSG00000174405LIG410091.328ENSEASG00005022073LIG410091.328Equus_asinus_asinus
ENSG00000174405LIG410090.889ENSECAG00000003257LIG410090.889Equus_caballus
ENSG00000174405LIG410067.494ENSELUG00000006787lig49967.034Esox_lucius
ENSG00000174405LIG410090.121ENSFCAG00000031985LIG410090.121Felis_catus
ENSG00000174405LIG48976.753ENSFALG00000004214LIG49876.753Ficedula_albicollis
ENSG00000174405LIG410089.682ENSFDAG00000008973LIG410089.682Fukomys_damarensis
ENSG00000174405LIG410065.877ENSFHEG00000007398lig48965.449Fundulus_heteroclitus
ENSG00000174405LIG48564.861ENSGMOG00000012843lig49964.698Gadus_morhua
ENSG00000174405LIG410076.540ENSGALG00000016854LIG410075.983Gallus_gallus
ENSG00000174405LIG49966.074ENSGAFG00000019779lig49565.604Gambusia_affinis
ENSG00000174405LIG410064.218ENSGACG00000014135lig49963.787Gasterosteus_aculeatus
ENSG00000174405LIG410099.763ENSGGOG00000027771LIG410099.671Gorilla_gorilla
ENSG00000174405LIG49966.311ENSHBUG00000006245lig49965.787Haplochromis_burtoni
ENSG00000174405LIG410089.791ENSHGLG00000000718LIG410089.791Heterocephalus_glaber_female
ENSG00000174405LIG410089.791ENSHGLG00100003265LIG410089.791Heterocephalus_glaber_male
ENSG00000174405LIG410065.758ENSHCOG00000012010lig49964.835Hippocampus_comes
ENSG00000174405LIG410065.799ENSIPUG00000013748lig49965.313Ictalurus_punctatus
ENSG00000174405LIG410090.450ENSSTOG00000024303LIG410090.450Ictidomys_tridecemlineatus
ENSG00000174405LIG410087.816ENSJJAG00000006750Lig410087.816Jaculus_jaculus
ENSG00000174405LIG410065.758ENSKMAG00000001149lig49965.670Kryptolebias_marmoratus
ENSG00000174405LIG49966.346ENSLBEG00000014578lig410066.587Labrus_bergylta
ENSG00000174405LIG410072.630ENSLACG00000003282LIG49972.677Latimeria_chalumnae
ENSG00000174405LIG410071.513ENSLOCG00000008901lig49870.833Lepisosteus_oculatus
ENSG00000174405LIG410088.061ENSLAFG00000031152LIG410088.061Loxodonta_africana
ENSG00000174405LIG410097.512ENSMFAG00000037235LIG410097.366Macaca_fascicularis
ENSG00000174405LIG410097.512ENSMMUG00000008874LIG410097.366Macaca_mulatta
ENSG00000174405LIG410097.512ENSMNEG00000023575LIG410097.366Macaca_nemestrina
ENSG00000174405LIG410097.156ENSMLEG00000026720LIG410097.036Mandrillus_leucophaeus
ENSG00000174405LIG410067.299ENSMAMG00000008472lig49966.593Mastacembelus_armatus
ENSG00000174405LIG49966.548ENSMZEG00005001855lig49966.007Maylandia_zebra
ENSG00000174405LIG410076.659ENSMGAG00000015532LIG49976.619Meleagris_gallopavo
ENSG00000174405LIG410084.632ENSMOCG00000019000Lig410084.632Microtus_ochrogaster
ENSG00000174405LIG410065.995ENSMMOG00000004390lig49965.670Mola_mola
ENSG00000174405LIG410084.479ENSMODG00000025064LIG410084.649Monodelphis_domestica
ENSG00000174405LIG410066.706ENSMALG00000008555lig49966.224Monopterus_albus
ENSG00000174405LIG410087.267MGP_CAROLIEiJ_G0030809Lig410087.267Mus_caroli
ENSG00000174405LIG410087.047ENSMUSG00000049717Lig410087.047Mus_musculus
ENSG00000174405LIG410087.047MGP_PahariEiJ_G0021270Lig410087.047Mus_pahari
ENSG00000174405LIG410087.047MGP_SPRETEiJ_G0031917Lig410087.047Mus_spretus
ENSG00000174405LIG410089.023ENSMPUG00000018675LIG410089.023Mustela_putorius_furo
ENSG00000174405LIG410091.109ENSMLUG00000001267LIG410091.109Myotis_lucifugus
ENSG00000174405LIG410087.267ENSNGAG00000013258Lig410087.267Nannospalax_galili
ENSG00000174405LIG49966.785ENSNBRG00000021252lig49966.227Neolamprologus_brichardi
ENSG00000174405LIG410097.630ENSNLEG00000007888LIG410097.585Nomascus_leucogenys
ENSG00000174405LIG410088.474ENSOPRG00000005765LIG410088.474Ochotona_princeps
ENSG00000174405LIG410087.706ENSODEG00000019683LIG410087.706Octodon_degus
ENSG00000174405LIG49966.429ENSONIG00000011969lig49866.117Oreochromis_niloticus
ENSG00000174405LIG410091.438ENSOCUG00000015734LIG410091.438Oryctolagus_cuniculus
ENSG00000174405LIG410065.485ENSORLG00000004041lig49964.835Oryzias_latipes
ENSG00000174405LIG410065.603ENSORLG00020019607lig49965.165Oryzias_latipes_hni
ENSG00000174405LIG410065.603ENSORLG00015017754lig49964.945Oryzias_latipes_hsok
ENSG00000174405LIG47371.753ENSOMEG00000003459lig49870.562Oryzias_melastigma
ENSG00000174405LIG410091.886ENSOGAG00000032120LIG49991.886Otolemur_garnettii
ENSG00000174405LIG48290.872ENSOARG00000005590LIG49890.872Ovis_aries
ENSG00000174405LIG410099.341ENSPPAG00000032998LIG410099.341Pan_paniscus
ENSG00000174405LIG410090.340ENSPPRG00000017804LIG410090.340Panthera_pardus
ENSG00000174405LIG410090.231ENSPTIG00000010051LIG410090.231Panthera_tigris_altaica
ENSG00000174405LIG410099.451ENSPTRG00000006025LIG410099.451Pan_troglodytes
ENSG00000174405LIG410097.512ENSPANG00000007562LIG410097.256Papio_anubis
ENSG00000174405LIG410067.654ENSPKIG00000011645lig49866.959Paramormyrops_kingsleyae
ENSG00000174405LIG410079.858ENSPSIG00000001504LIG49979.231Pelodiscus_sinensis
ENSG00000174405LIG410064.379ENSPMGG00000013486lig49963.447Periophthalmus_magnuspinnatus
ENSG00000174405LIG410087.171ENSPEMG00000000076Lig410087.171Peromyscus_maniculatus_bairdii
ENSG00000174405LIG410084.615ENSPCIG00000021882LIG410084.430Phascolarctos_cinereus
ENSG00000174405LIG410066.351ENSPFOG00000000797lig49965.604Poecilia_formosa
ENSG00000174405LIG410066.232ENSPLAG00000001196lig49965.495Poecilia_latipinna
ENSG00000174405LIG410066.351ENSPMEG00000021353lig49965.714Poecilia_mexicana
ENSG00000174405LIG410066.114ENSPREG00000007323lig49965.275Poecilia_reticulata
ENSG00000174405LIG410098.341ENSPPYG00000005540LIG410098.244Pongo_abelii
ENSG00000174405LIG410090.889ENSPVAG00000016403LIG410090.889Pteropus_vampyrus
ENSG00000174405LIG49966.429ENSPNYG00000009660lig49965.897Pundamilia_nyererei
ENSG00000174405LIG410065.403ENSPNAG00000028056lig410064.803Pygocentrus_nattereri
ENSG00000174405LIG410065.403ENSPNAG00000028069LIG410064.803Pygocentrus_nattereri
ENSG00000174405LIG410086.169ENSRNOG00000014605Lig410086.169Rattus_norvegicus
ENSG00000174405LIG49997.031ENSRBIG00000039962LIG410095.719Rhinopithecus_bieti
ENSG00000174405LIG410096.801ENSRROG00000006040LIG410096.707Rhinopithecus_roxellana
ENSG00000174405LIG410095.060ENSSBOG00000019029LIG410095.060Saimiri_boliviensis_boliviensis
ENSG00000174405LIG410080.687ENSSHAG00000009525LIG410081.250Sarcophilus_harrisii
ENSG00000174405LIG410066.706ENSSFOG00015012835lig410065.721Scleropages_formosus
ENSG00000174405LIG410064.692ENSSMAG00000011267lig49964.230Scophthalmus_maximus
ENSG00000174405LIG410067.773ENSSDUG00000010343lig49867.295Seriola_dumerili
ENSG00000174405LIG410065.877ENSSLDG00000003239lig49965.385Seriola_lalandi_dorsalis
ENSG00000174405LIG410083.707ENSSARG00000006573LIG410083.589Sorex_araneus
ENSG00000174405LIG410077.725ENSSPUG00000002444LIG410077.725Sphenodon_punctatus
ENSG00000174405LIG410066.706ENSSPAG00000001609lig49965.934Stegastes_partitus
ENSG00000174405LIG410088.863ENSSSCG00000009540LIG410088.804Sus_scrofa
ENSG00000174405LIG410075.711ENSTGUG00000010795LIG49975.996Taeniopygia_guttata
ENSG00000174405LIG410066.351ENSTRUG00000009984lig49965.714Takifugu_rubripes
ENSG00000174405LIG410066.114ENSTNIG00000010348lig49965.824Tetraodon_nigroviridis
ENSG00000174405LIG410091.438ENSTBEG00000017741LIG410091.438Tupaia_belangeri
ENSG00000174405LIG410089.572ENSTTRG00000012660LIG410089.572Tursiops_truncatus
ENSG00000174405LIG410089.336ENSUAMG00000003773LIG410089.243Ursus_americanus
ENSG00000174405LIG410073.934ENSXETG00000002654lig49973.238Xenopus_tropicalis
ENSG00000174405LIG410065.995ENSXCOG00000017401lig49965.165Xiphophorus_couchianus
ENSG00000174405LIG410066.391ENSXMAG00000015142lig49965.423Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000012single strand break repair8798671.IDAProcess
GO:0000784nuclear chromosome, telomeric region23275564.ICComponent
GO:0000793condensed chromosome12589063.IDAComponent
GO:0001701in utero embryonic development-ISSProcess
GO:0002328pro-B cell differentiation-ISSProcess
GO:0003677DNA binding8798671.IDAFunction
GO:0003909DNA ligase activity12517771.IDAFunction
GO:0003909DNA ligase activity-TASFunction
GO:0003910DNA ligase (ATP) activity8798671.22192310.IDAFunction
GO:0005515protein binding9242410.9259561.9809069.11702069.16439205.17389648.17396150.21070942.22529269.22658747.23178593.23219551.25416956.25910212.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus8798671.12589063.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex21873635.IBAComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex15194694.IDAComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex-ISSComponent
GO:0006260DNA replication-IEAProcess
GO:0006266DNA ligation12517771.IDAProcess
GO:0006297nucleotide-excision repair, DNA gap filling21873635.IBAProcess
GO:0006297nucleotide-excision repair, DNA gap filling12517771.IDAProcess
GO:0006302double-strand break repair9242410.19589734.IDAProcess
GO:0006302double-strand break repair-ISSProcess
GO:0006303double-strand break repair via nonhomologous end joining21873635.IBAProcess
GO:0006303double-strand break repair via nonhomologous end joining12517771.IDAProcess
GO:0006303double-strand break repair via nonhomologous end joining23275564.IGIProcess
GO:0006303double-strand break repair via nonhomologous end joining9809069.IMPProcess
GO:0006303double-strand break repair via nonhomologous end joining-ISSProcess
GO:0006303double-strand break repair via nonhomologous end joining-TASProcess
GO:0007049cell cycle-IEAProcess
GO:0007417central nervous system development-ISSProcess
GO:0008022protein C-terminus binding12589063.IPIFunction
GO:0008283cell proliferation-ISSProcess
GO:0010165response to X-ray9809069.IMPProcess
GO:0010332response to gamma radiation-ISSProcess
GO:0016874ligase activity9242410.IDAFunction
GO:0032807DNA ligase IV complex21873635.IBAComponent
GO:0032807DNA ligase IV complex9809069.IMPComponent
GO:0033077T cell differentiation in thymus-ISSProcess
GO:0033151V(D)J recombination9809069.IDAProcess
GO:0033152immunoglobulin V(D)J recombination21873635.IBAProcess
GO:0033153T cell receptor V(D)J recombination-ISSProcess
GO:0035019somatic stem cell population maintenance-ISSProcess
GO:0036464cytoplasmic ribonucleoprotein granule-IDAComponent
GO:0043524negative regulation of neuron apoptotic process-ISSProcess
GO:0045190isotype switching-ISSProcess
GO:0046872metal ion binding-IEAFunction
GO:0048146positive regulation of fibroblast proliferation-ISSProcess
GO:0050769positive regulation of neurogenesis-ISSProcess
GO:0051102DNA ligation involved in DNA recombination-ISSProcess
GO:0051103DNA ligation involved in DNA repair12517771.IDAProcess
GO:0051103DNA ligation involved in DNA repair-ISSProcess
GO:0051276chromosome organization-ISSProcess
GO:0051301cell division-IEAProcess
GO:0051402neuron apoptotic process-ISSProcess
GO:0070419nonhomologous end joining complex20383123.25941166.IDAComponent
GO:0071285cellular response to lithium ion-IEAProcess
GO:0071479cellular response to ionizing radiation29463814.IGIProcess
GO:0071897DNA biosynthetic process-IEAProcess
GO:0075713establishment of integrated proviral latency-TASProcess
GO:0097680double-strand break repair via classical nonhomologous end joining24837021.IMPProcess
GO:2001252positive regulation of chromosome organization23275564.IMPProcess
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