EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1165795102SilentnovelL189L0.17
BLCAchr1165794044SilentnovelF38F0.38
BLCAchr1165794242SilentnovelK104K0.15
BRCAchr1165794720SilentNAT167T0.12
BRCAchr11657960393'UTRnovel0.07
BRCAchr1165793944Intronnovel0.24
BRCAchr1165795278SilentNAK247K0.48
CESCchr11657960313'UTRnovel0.34
CESCchr1165795162Missense_MutationnovelR209W0.28
CESCchr1165795149Silentrs201146309A204A0.33
CESCchr11657961783'UTRnovel0.13
CESCchr1165794186Missense_MutationnovelD86H0.13
COADchr1165794610Missense_Mutationrs199678307R131C0.38
COADchr1165794049Missense_MutationNAP40L0.35
COADchr1165795130Missense_Mutationrs774919756G198D0.06
COADchr11657872645'UTRnovel0.31
COADchr1165795264Missense_MutationnovelR243C0.19
GBMchr1165794234Missense_Mutationrs547964049R102C0.35
GBMchr1165795094Missense_MutationNAR186H0.39zf-C2H2
HNSCchr1165795162Missense_MutationnovelR209W0.47
HNSCchr1165794623Missense_MutationnovelR135H0.2
KIRCchr1165795101SilentnovelS188S0.36
KIRPchr1165795340Nonstop_MutationNA*268Lext*590.09
KIRPchr1165795341Nonstop_MutationNA*268Cext*590.1
LAMLchr1165794194SilentnovelG88G0.13
LGGchr1165787411Missense_MutationnovelS13F0.5
LIHCchr1165794623Missense_MutationnovelR135H0.27
LUADchr1165787440Missense_MutationnovelP23T0.28
LUADchr1165794113Missense_Mutationrs781707967L61F0.27
LUADchr1165794078Missense_MutationnovelS50T0.09
LUADchr1165795297Missense_MutationNAQ254E0.42
LUADchr1165794188Missense_MutationnovelD86E0.44
LUADchr11657953893'UTRnovel0.56
LUSCchr1165795192Missense_Mutationrs779727157G219S0.25
OVchr1165787435Missense_MutationNAE21V0.4
PAADchr1165795052Missense_MutationnovelR172Q0.21
PRADchr1165794642Silentrs778793840N141N0.33
SARCchr1165794631Nonsense_MutationnovelK138*0.2
SARCchr1165793929Intronnovel0.23
SKCMchr1165794245Missense_MutationNAM105I0.49
SKCMchr1165794226Missense_MutationNAG99D0.48
SKCMchr1165795126Missense_MutationNAH197Y0.19
SKCMchr1165794026Splice_Regionrs7544830240.19
SKCMchr1165794666SilentnovelT149T0.54
SKCMchr1165794126Nonsense_MutationNAR66*0.13
SKCMchr1165794696Silentrs765882500F159F0.15
SKCMchr1165795129Missense_MutationNAG198S0.12
STADchr1165795088Missense_Mutationrs151272806T184M0.1zf-C2H2
STADchr1165795319Missense_MutationnovelL261Q0.13
STADchr1165794646Missense_Mutationrs577150616V143I0.24
UCECchr1165794716Missense_MutationNAR166Q0.31
UCECchr1165795264Missense_MutationnovelR243C0.11
UCECchr1165795149Silentrs201146309A204A0.24
UCECchr11657953933'UTRnovel0.3
UCECchr1165794153Missense_MutationnovelG75R0.35
UCECchr1165794646Missense_Mutationrs577150616V143I0.33
UCECchr1165794071Silentrs142142282P47P0.05
UCECchr11657960393'UTRnovel0.1
UCECchr11657873275'UTRrs7811343780.49
UCECchr1165793930Intronnovel0.67
UCECchr11657959333'UTRnovel0.31
UCECchr11657961323'UTRnovel0.4
UCECchr1165794711Silentrs377708693H164H0.41
UCECchr1165795145Missense_MutationnovelY203C0.29
UCECchr1165794206Frame_Shift_DelnovelQ94Rfs*120.19
UCECchr11657963133'UTRnovel0.38
UCECchr1165794716Missense_MutationNAR166Q0.35
UCECchr11657959653'UTRnovel0.5
UCECchr11657960863'UTRnovel0.26
UCECchr11657958203'UTRnovel0.44
UCECchr1165794657SilentnovelH146H0.17

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BRCADEL0.16941.2183e-05
ESCAAMP0.2120.018342
TGCTDEL0.70.21504

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.027

Kaplan-Meier Survival Analysis

SKCM0.0004

Kaplan-Meier Survival Analysis

BRCA0.0097

Kaplan-Meier Survival Analysis

ESCA0.022

Kaplan-Meier Survival Analysis

KIRP0.00016

Kaplan-Meier Survival Analysis

PAAD0.0013

Kaplan-Meier Survival Analysis

UCEC0.00068

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

LUAD0.025

Kaplan-Meier Survival Analysis

UVM0.0001

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000172818 (Gene tree)
Gene ID
5017
Gene Symbol
OVOL1
Alias
HOVO1
Full Name
ovo like transcriptional repressor 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
10,198 bases
Position
chr11:65,787,022-65,797,219
Accession
8525
RBP type
canonical RBP
Summary
This gene encodes a putative zinc finger containing transcription factor that is highly similar to homologous protein in Drosophila and mouse. Based on known functions in these species, this protein is likely involved in hair formation and spermatogenesis in human as well. [provided by RefSeq, Aug 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000434220zf-C2H2PF00096.261.2e-1313
ENSP00000434220zf-C2H2PF00096.261.2e-1323
ENSP00000434220zf-C2H2PF00096.261.2e-1333
ENSP00000337862zf-C2H2PF00096.263.7e-1313
ENSP00000337862zf-C2H2PF00096.263.7e-1323
ENSP00000337862zf-C2H2PF00096.263.7e-1333
ENSP00000434220zf-metPF12874.70.000512
ENSP00000434220zf-metPF12874.70.000522
ENSP00000337862zf-metPF12874.70.001512
ENSP00000337862zf-metPF12874.70.001522
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000532448OVOL1-2031774XM_005274018ENSP00000434220205 (aa)XP_005274075G3V1B0
ENST00000531907OVOL1-202558--- (aa)--
ENST00000335987OVOL1-2013034-ENSP00000337862267 (aa)-O14753
Gene Model
Click here to download ENSG00000172818's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000172818Dermatitis, Atopic2E-1926482879
ENSG00000172818Uric Acid3E-1323263486
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000172818rs108960451165788053GBlood protein levels29875488[0.12-0.24] unit decrease0.18EFO_0007937
ENSG00000172818rs6428031165793149TUrate levels23263486[0.026-0.045] mg/dl decrease0.036EFO_0004531
ENSG00000172818rs6428031165793149TEducational attainment (MTAG)30038396[0.0049-0.0099] unit increase0.0074EFO_0004784
ENSG00000172818rs6428031165793149THighest math class taken (MTAG)30038396[0.0058-0.0124] unit increase0.0091EFO_0004875
ENSG00000172818rs560195051165794334GBlond vs. brown/black hair color30531825NR1.087EFO_0003924
ENSG00000172818rs127977061165793898?Hair color30595370EFO_0007822
ENSG00000172818rs107918241165791795?Eczema30595370HP_0000964
ENSG00000172818rs112273021165787031ASystemic lupus erythematosus28714469[1.08-1.21]1.15EFO_0002690
ENSG00000172818rs6447401165793997TAge of smoking initiation (MTAG)30643251[0.0059-0.0117] unit increase0.00881013EFO_0005670
ENSG00000172818rs6447401165793997TSmoking initiation (ever regular vs never regular) (MTAG)30643251[0.0051-0.0093] unit decrease0.00719881EFO_0006527
ENSG00000172818rs6447401165793997TSmoking initiation (ever regular vs never regular)30643251[0.0091-0.0191] unit decrease0.014078517EFO_0006527
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000172818's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000172818OVOL110094.634ENSCLAG00000016426OVOL17994.068Chinchilla_lanigera
ENSG00000172818OVOL110071.220ENSCPBG00000023411OVOL110071.161Chrysemys_picta_bellii
ENSG00000172818OVOL110090.732ENSDNOG00000024062OVOL19889.496Dasypus_novemcinctus
ENSG00000172818OVOL110095.131ENSDORG00000028510Ovol110095.131Dipodomys_ordii
ENSG00000172818OVOL17797.452ENSEEUG00000010161OVOL19996.835Erinaceus_europaeus
ENSG00000172818OVOL18068.902ENSGALG00000049996OVOL17367.429Gallus_gallus
ENSG00000172818OVOL110072.195ENSGAGG00000008199OVOL110071.536Gopherus_agassizii
ENSG00000172818OVOL110094.757ENSJJAG00000024400Ovol110094.757Jaculus_jaculus
ENSG00000172818OVOL110095.506MGP_CAROLIEiJ_G0022558Ovol110095.506Mus_caroli
ENSG00000172818OVOL110095.506ENSMUSG00000024922Ovol110095.506Mus_musculus
ENSG00000172818OVOL110094.757MGP_PahariEiJ_G0014055Ovol110094.757Mus_pahari
ENSG00000172818OVOL110095.880MGP_SPRETEiJ_G0023472Ovol110095.880Mus_spretus
ENSG00000172818OVOL110096.255ENSOGAG00000016496OVOL110096.255Otolemur_garnettii
ENSG00000172818OVOL19570.769ENSPSIG00000002913OVOL110064.748Pelodiscus_sinensis
ENSG00000172818OVOL110094.382ENSRNOG00000020669Ovol110094.382Rattus_norvegicus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-IEAProcess
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-IEAFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific-ISAFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific21873635.IBAFunction
GO:0001228DNA-binding transcription activator activity, RNA polymerase II-specific21873635.IBAFunction
GO:0001822kidney development-IEAProcess
GO:0005634nucleus21873635.IBAComponent
GO:0007283spermatogenesis-IEAProcess
GO:0007498mesoderm development-IEAProcess
GO:0009913epidermal cell differentiation21873635.IBAProcess
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0043588skin development-IEAProcess
GO:0045892negative regulation of transcription, DNA-templated21873635.IBAProcess
GO:0045944positive regulation of transcription by RNA polymerase II-IEAProcess
GO:0046872metal ion binding-IEAFunction
GO:0051729germline cell cycle switching, mitotic to meiotic cell cycle-IEAProcess
GO:1901994negative regulation of meiotic cell cycle phase transition-IEAProcess
GO:2000647negative regulation of stem cell proliferation-IEAProcess
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