EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1249272967Missense_MutationNAP364T0.61
BLCAchr1249272424Nonsense_MutationnovelE183*0.43
BRCAchr1249272898Missense_MutationnovelI341F0.3
BRCAchr1249272339Missense_MutationNAM154I0.19
BRCAchr1249269681Missense_MutationnovelV74I0.11
BRCAchr1249272944Missense_MutationnovelN356T0.13
BRCAchr1249272990SilentNAV371V0.23
BRCAchr1249269643Missense_MutationnovelH61R0.09
BRCAchr1249273144Missense_MutationNAE423K0.22
BRCAchr1249269553Missense_MutationNAQ31L0.33
BRCAchr1249272501In_Frame_DelnovelY210_I212del0.07
CESCchr1249272861SilentnovelV328V0.37
CESCchr1249272747SilentNAE290E0.2
CESCchr1249273162Missense_MutationnovelE429Q0.41
COADchr12492732733'UTRnovel0.42
COADchr1249272866Missense_MutationNAA330V0.3
COADchr1249269963Missense_MutationNAR121Q0.27
ESCAchr1249272712Missense_MutationnovelE279K0.25
GBMchr1249272290Missense_MutationnovelF138Y0.11
GBMchr12492651235'UTRnovel0.24
GBMchr1249269543Missense_MutationnovelH28N0.21
GBMchr1249273047SilentnovelR390R0.1
KIRCchr1249272999SilentNAA374A0.38
LIHCchr1249272771SilentNAP298P0.57
LUADchr1249272944Missense_MutationNAN356S0.1
LUADchr1249272973Nonsense_MutationnovelG366*0.33
LUADchr1249269659Silentrs749099041V66V0.22
LUADchr1249273177Missense_MutationnovelE434K0.11
LUSCchr1249272346Missense_MutationnovelL157F0.17
LUSCchr1249273068SilentNAL397L0.45
LUSCchr12492732893'UTRnovel0.44
LUSCchr1249272648SilentnovelT257T0.2
LUSCchr1249272304Missense_MutationnovelG143R0.26
LUSCchr1249272259Nonsense_MutationNAQ128*0.19
LUSCchr1249272780Missense_MutationnovelQ301H0.39
LUSCchr1249273023SilentnovelT382T0.38
LUSCchr12492733193'UTRnovel0.17
OVchr1249269477Missense_MutationnovelS6A0.11
OVchr1249272779Missense_MutationnovelQ301L0.05
OVchr12492651295'UTRnovel0.1
OVchr1249272496Missense_MutationnovelE207Q0.05
OVchr12492651095'UTRnovel0.63
OVchr1249269591Missense_Mutationrs763427275G44R0.14
PAADchr1249269629Frame_Shift_DelnovelG57Cfs*190.07
PAADchr1249272789SilentnovelK304K0.11
PRADchr12492651335'UTRnovel0.4
READchr1249269968Missense_Mutationrs755278733R123C0.27
READchr1249269843Missense_MutationnovelG81D0.55
READchr1249269915Missense_MutationNAR105Q0.28
READchr1249272529Missense_Mutationrs780513922D218N0.4
SKCMchr12492732753'UTRnovel0.44
SKCMchr1249269530Silentrs753086058L23L0.67
SKCMchr12492732593'UTRnovel0.1
SKCMchr1249272274Nonsense_MutationnovelQ133*0.41
SKCMchr1249272268Missense_MutationnovelG131S0.14
SKCMchr1249272372SilentNAS165S0.58
SKCMchr1249272666Silentrs754273863P263P0.67
SKCMchr1249273097Nonsense_MutationnovelW407*0.11
SKCMchr12492651385'UTRnovel0.52
SKCMchr1249269604Missense_MutationnovelS48F0.06
STADchr12492650915'UTRnovel0.22
STADchr12492650915'UTRnovel0.15
STADchr1249272892Missense_Mutationrs756957516R339C0.31
TGCTchr1249269830Missense_MutationnovelE77K0.16
UCECchr1249269836Missense_Mutationrs775004592R79C0.41
UCECchr1249269968Missense_Mutationrs755278733R123C0.36
UCECchr1249269890Nonsense_MutationnovelE97*0.29
UCECchr1249272863Missense_Mutationrs551680115N329S0.29
UCECchr12492732313'UTRnovel0.39
UCECchr1249269545Silentrs576580429H28H0.39
UCECchr1249272460Missense_MutationnovelL195M0.41
UCECchr1249272529Missense_Mutationrs780513922D218N0.24
UCECchr1249273101Silentrs770139860Y408Y0.38
UCECchr12492732523'UTRrs7592904930.25
UCECchr12492650915'UTRnovel0.44
UCECchr1249272641Missense_MutationnovelF255S0.25
UCECchr1249272892Missense_Mutationrs756957516R339C0.07
UCECchr1249273110Frame_Shift_DelnovelM413Wfs*730.43
UCECchr1249272922Missense_MutationNAT349A0.24
UCECchr1249269496Missense_MutationnovelA12V0.25
UCECchr1249272469Missense_MutationNAS198P0.29

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCAMP0.14580.085003
READDEL0.05450.064633
STADDEL0.08840.22179

Survival Analysis
CancerP-value Q-value
KIRC0.0031

Kaplan-Meier Survival Analysis

SARC0.013

Kaplan-Meier Survival Analysis

MESO0.0001

Kaplan-Meier Survival Analysis

SKCM0.0001

Kaplan-Meier Survival Analysis

BRCA0.0008

Kaplan-Meier Survival Analysis

KIRP0.011

Kaplan-Meier Survival Analysis

COAD0.0007

Kaplan-Meier Survival Analysis

PAAD0.0001

Kaplan-Meier Survival Analysis

BLCA0.023

Kaplan-Meier Survival Analysis

CESC0.028

Kaplan-Meier Survival Analysis

READ0.045

Kaplan-Meier Survival Analysis

LAML0.001

Kaplan-Meier Survival Analysis

KICH0.0014

Kaplan-Meier Survival Analysis

UCEC0.047

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

CHOL0.032

Kaplan-Meier Survival Analysis

LUAD0.00073

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000167553 (Gene tree)
Gene ID
84790
Gene Symbol
TUBA1C
Alias
MGC14580|MGC10851|bcm948|TUBA6
Full Name
tubulin alpha 1c
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
85,868 bases
Position
chr12:49,188,736-49,274,603
Accession
20768
RBP type
non-canonical RBP
Summary
(Tubulin Alpha 1c) is a Protein Coding gene. Diseases associated with TUBA1C include Distal Hereditary Motor Neuropathy, Type Ii. Among its related pathways are Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding and Regulation of CFTR activity (norm and CF). Gene Ontology (GO) annotations related to this gene include GTP binding and structural molecule activity. An important paralog of this gene is TUBA1A.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
30234379Identify Cross Talk Between Circadian Rhythm and Coronary Heart Disease by Multiple Correlation Analysis.J Comput Biol2018 DecYan Xdoi: 10.1089/cmb.2017.0254
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000550574TUBA1C-207573--- (aa)--
ENST00000548470TUBA1C-2031105--- (aa)--
ENST00000301072TUBA1C-2013001-ENSP00000301072449 (aa)-Q9BQE3
ENST00000549818TUBA1C-206536-ENSP0000044766988 (aa)-F8VRK1
ENST00000552125TUBA1C-208575-ENSP0000044791082 (aa)-H0YHV2
ENST00000541364TUBA1C-2021695-ENSP00000443475519 (aa)-F5H5D3
ENST00000549183TUBA1C-204696-ENSP00000448211130 (aa)-F8VS66
ENST00000549554TUBA1C-205560--- (aa)--
ENST00000639419TUBA1C-2101075-ENSP00000492176325 (aa)-A0A1W2PQM2
ENST00000552448TUBA1C-2091800-ENSP0000044864688 (aa)-F8VRK1
Gene Model
Click here to download ENSG00000167553's gene model file
Pathways
Pathway IDPathway NameSource
hsa04145PhagosomeKEGG
hsa04210ApoptosisKEGG
hsa04530Tight junctionKEGG
hsa04540Gap junctionKEGG
hsa05130Pathogenic Escherichia coli infectionKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000167553Lipoprotein(a)6.7670000E-005-
ENSG00000167553Prostatic Neoplasms7E-1221743467
ENSG00000167553Prostatic Neoplasms2E-626034056
ENSG00000167553Prostatic Neoplasms7E-826034056
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000167553rs111689361249251457CCancer (pleiotropy)27197191EFO_0001071|EFO_1000650|EFO_0005842|EFO_1001515|EFO_0001663|EFO_1001516|EFO_0000305|EFO_0001075|EFO_0000571|EFO_0000708
ENSG00000167553rs1175571981249262165ATotal body bone mineral density29304378unit decrease0.0769EFO_0003923
ENSG00000167553rs1175571981249262165ATotal body bone mineral density29304378unit decrease0.0887EFO_0003923
ENSG00000167553rs111689511249267932TIntelligence (MTAG)29326435[0.019-0.039] unit increase0.02875135EFO_0004337
ENSG00000167553rs111689511249267932TCognitive performance30038396[0.017-0.036] unit increase0.0264EFO_0008354
ENSG00000167553rs111689511249267932TEducational attainment (MTAG)30038396[0.0092-0.0178] unit increase0.0135EFO_0004784
ENSG00000167553rs111689511249267932TCognitive performance (MTAG)30038396[0.015-0.03] unit increase0.0228EFO_0008354
ENSG00000167553rs79586791249268608TPlatelet distribution width27863252[0.13-0.16] unit increase0.144808EFO_0007984
ENSG00000167553rs111689511249267932TGeneral cognitive ability29844566z-score increase5.565EFO_0004337
ENSG00000167553rs111689361249251457?Reaction time29844566[0.0054-0.0124] unit increase0.0089327EFO_0008393
ENSG00000167553rs1135434371249258948?Heel bone mineral density30595370EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000167553's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000167553TUBA1C10098.226ENSDARG00000055216tuba1c9999.539Danio_rerio
ENSG00000167553TUBA1C10099.332ENSMUSG00000043091Tuba1c10099.332Mus_musculus
ENSG00000167553TUBA1C10096.222ENSMUSG00000067338Tuba3b10096.222Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000226microtubule cytoskeleton organization21873635.IBAProcess
GO:0000278mitotic cell cycle21873635.IBAProcess
GO:0003924GTPase activity-IEAFunction
GO:0005198structural molecule activity12090300.TASFunction
GO:0005200structural constituent of cytoskeleton21873635.IBAFunction
GO:0005515protein binding22720776.25556234.27107012.IPIFunction
GO:0005525GTP binding21873635.IBAFunction
GO:0005634nucleus21630459.HDAComponent
GO:0005634nucleus22720776.IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005874microtubule21873635.IBAComponent
GO:0005874microtubule12090300.TASComponent
GO:0007017microtubule-based process21873635.IBAProcess
GO:0007017microtubule-based process12090300.TASProcess
GO:0015630microtubule cytoskeleton-IDAComponent
GO:0030705cytoskeleton-dependent intracellular transport12090300.TASProcess
GO:0031982vesicle19190083.HDAComponent
GO:0051301cell division12090300.TASProcess
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