EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
25892554Loss of GM130 in breast cancer cells and its effects on cell migration, invasion and polarity.Cell Cycle2015Baschieri Fdoi: 10.1080/15384101.2015.1007771.
22735382GOLGA2/GM130, cis-Golgi matrix protein, is a novel target of anticancer gene therapy.Mol Ther2012 NovChang SHdoi: 10.1038/mt.2012.125
28782625Shifted Golgi targeting of glycosyltransferases and α-mannosidase IA from giantin to GM130-GRASP65 results in formation of high mannose N-glycans in aggressive prostate cancer cells.Biochim Biophys Acta Gen Subj2017 NovBhat Gdoi: 10.1016/j.bbagen.2017.08.006

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr9128260596Frame_Shift_DelnovelE516Sfs*420.19
BLCAchr9128258036Missense_MutationNAD791Y0.41
BLCAchr9128268511Missense_Mutationrs776699882N74S0.5
BLCAchr9128263065Missense_MutationnovelD294N0.36
BLCAchr9128260587Missense_MutationnovelE519K0.06
BLCAchr9128262631Missense_MutationnovelA329P0.1
BLCAchr9128265812Nonsense_MutationNAQ241*0.29
BLCAchr9128257471Missense_Mutationrs200657891E898K0.89
BLCAchr9128268488Missense_MutationNAD82N0.3
BLCAchr9128258081Nonsense_MutationnovelQ776*0.53
BLCAchr9128260471In_Frame_DelnovelF556_V557del0.16
BLCAchr9128261241Missense_Mutationrs766471494E424K0.28
BLCAchr9128257477Missense_Mutationrs368175525R896C0.28
BLCAchr9128266303Missense_Mutationrs775544000T195M0.34
BLCAchr9128257504Missense_MutationnovelE887K0.3
BLCAchr9128261241Missense_Mutationrs766471494E424K0.09
BLCAchr9128257268SilentNAV936V0.65
BLCAchr9128260638Missense_MutationnovelE502Q0.21
BRCAchr9128265600Missense_MutationnovelQ279H0.08
BRCAchr9128261500Missense_MutationNAG402V0.16
BRCAchr9128257250SilentnovelV942V0.08
BRCAchr9128261722SilentNAQ363Q0.41
BRCAchr9128273847Splice_Regionnovel0.15
BRCAchr91282568723'UTRNA0.38
BRCAchr9128275927Missense_MutationNAT17I0.35
CESCchr9128265582Splice_Regionrs7777448100.15
CESCchr91282561163'UTRnovel0.1
CESCchr9128261522Nonsense_MutationnovelK395*0.16
CESCchr9128273960Missense_MutationnovelQ33E0.19
CESCchr9128257504Missense_MutationnovelE887K0.45
CESCchr9128266317Missense_MutationnovelQ190H0.07
CESCchr9128272810Intronnovel0.42
CHOLchr9128268440Missense_MutationnovelT98A0.54
COADchr9128257205SilentNAN957N0.42
COADchr9128260112Silentrs757910820G585G0.21
COADchr9128265594In_Frame_DelNAK281del0.33
COADchr9128258117Missense_MutationNAR764C0.3
COADchr9128268468Silentrs368496788G88G0.4
COADchr9128257638Missense_MutationnovelY867C0.05
COADchr9128267513Missense_Mutationrs201848352A142V0.09
COADchr9128273917Missense_MutationNAK47R0.3
COADchr9128257383Missense_Mutationrs201662917A927V0.43
COADchr9128260581Missense_MutationNAR521C0.3
COADchr9128262650SilentnovelR322R0.08
COADchr9128260141Missense_MutationnovelV576I0.24
COADchr9128257111Frame_Shift_Delrs763679060Y989Tfs*90.35
COADchr9128267482Silentrs750162676S152S0.13
COADchr9128273895SilentNAS54S0.22
COADchr9128257174Missense_MutationnovelR968C0.09
COADchr9128261511SilentNAE398E0.41
COADchr9128257110Frame_Shift_InsNAY989Lfs*40.29
COADchr9128260507SilentNAL545L0.44
COADchr9128259279Missense_MutationnovelV635A0.41
ESCAchr9128273966Missense_MutationnovelE31K0.45
ESCAchr9128268161Splice_SitenovelX105_splice0.18
GBMchr9128273926Missense_MutationnovelA44V0.2
GBMchr9128259022Missense_MutationnovelA693T0.19
GBMchr9128268493Missense_MutationnovelP80Q0.14
HNSCchr9128257649SilentNAE863E0.21
HNSCchr9128260478Missense_MutationnovelG555A0.17
HNSCchr9128260125Missense_MutationnovelG581A0.05
HNSCchr91282569973'UTRnovel0.6
HNSCchr9128259304Nonsense_MutationnovelQ627*0.1
HNSCchr9128257660SilentnovelR860R0.08
HNSCchr9128265612SilentnovelV275V0.2
HNSCchr9128260588Silentrs146436048A518A0.45
HNSCchr9128259391Splice_SitenovelX598_splice0.39
HNSCchr9128260692Nonsense_MutationnovelQ484*0.3
KICHchr9128260725Missense_Mutationrs376675493R473W0.32
KIRCchr9128257105Frame_Shift_DelnovelA991Lfs*70.2
KIRPchr9128266298Nonsense_MutationNAQ197*0.36
KIRPchr9128259167Splice_RegionNAQ672Q0.33
LAMLchr9128265978Nonsense_MutationnovelQ215*0.07
LGGchr9128260151Silentrs373870855S572S0.4
LGGchr9128258009Missense_MutationnovelA800T0.16
LGGchr9128257397Missense_MutationnovelQ922H0.47
LGGchr9128260552Silentrs144463156N530N0.43
LGGchr9128267255Missense_MutationnovelA167V0.45
LUADchr91282569783'UTRnovel0.15
LUADchr9128262564Missense_MutationnovelQ351L0.21
LUADchr9128273913Missense_MutationNAK48N0.45
LUADchr9128265651SilentnovelR262R0.23
LUADchr91282569343'UTRnovel0.5
LUADchr9128273913Missense_MutationNAK48N0.19
LUADchr9128265600Missense_MutationnovelQ279H0.08
LUADchr9128265818Missense_MutationNAH239Y0.09
LUADchr9128260581Missense_MutationNAR521C0.06
LUADchr9128261485Nonsense_MutationnovelW407*0.17
LUADchr9128257262Silentrs762337817L938L0.11
LUADchr9128273970Missense_MutationnovelL29F0.41
LUADchr9128263064Frame_Shift_DelnovelR293Tfs*170.13
LUADchr9128257854SilentNAL822L0.09
LUADchr9128261233Missense_MutationnovelE426D0.1
LUADchr9128257102Missense_MutationnovelD992N0.09
LUSCchr9128268467Missense_MutationNAG89C0.33
LUSCchr91282569743'UTRnovel0.21
LUSCchr9128259206Silentrs772411440A659A0.21
LUSCchr9128257123Missense_Mutationrs754164457I985V0.65
LUSCchr9128257110Frame_Shift_InsNAY989Lfs*40.37
MESOchr9128267939Missense_MutationnovelC139R0.09
OVchr9128260677Missense_MutationNAD489N0.21
OVchr9128257647Frame_Shift_InsnovelK864Rfs*490.05
OVchr91282570073'UTRnovel0.16
OVchr91282569663'UTRnovel0.17
PAADchr9128260601Frame_Shift_InsnovelW514Lfs*380.09
PAADchr9128260677Missense_MutationnovelD489Y0.21
PAADchr91282568683'UTRnovel0.39
PRADchr9128261520Missense_MutationNAK395N0.04
PRADchr9128265606Silentrs781462903T277T0.19
READchr9128257108Missense_MutationNAR990W0.45
READchr9128273946SilentNAS37S0.11
READchr9128262677Missense_MutationNAE313D0.35
SARCchr9128266012Frame_Shift_DelnovelE204Nfs*90.46
SARCchr9128265621SilentnovelL272L0.38
SKCMchr9128260080In_Frame_DelnovelK590_E596del0.26
SKCMchr9128268455Missense_MutationNAP93S0.35
SKCMchr9128267473SilentNAN155N0.61
SKCMchr9128259169Nonsense_MutationNAQ672*0.14
SKCMchr9128257875SilentnovelL815L0.89
SKCMchr9128265992Missense_MutationnovelG210E0.87
SKCMchr9128257686Missense_MutationnovelQ851L0.3
SKCMchr9128259201Missense_MutationNAA661V0.31
SKCMchr9128257649SilentNAE863E0.68
SKCMchr9128257454Silentrs774799443F903F0.13
SKCMchr9128257826Missense_Mutationrs771851290R832C0.73
SKCMchr9128259201Missense_MutationNAA661V0.7
SKCMchr9128257496SilentnovelV889V0.39
SKCMchr91282570163'UTRrs7565511780.28
SKCMchr9128257407Missense_MutationnovelP919L0.33
SKCMchr9128257408Missense_Mutationrs769990416P919S0.34
SKCMchr9128260523Missense_MutationnovelS540F0.29
STADchr9128261706Missense_Mutationrs758084594M369V0.19
STADchr9128260151Silentrs373870855S572S0.5
STADchr9128260152Missense_Mutationrs768763105S572L0.2
STADchr9128260096SilentNAL591L0.22
STADchr9128257788Splice_SiteNAX844_splice0.31
STADchr9128265863Missense_MutationNAG224W0.27
STADchr9128273920Missense_Mutationrs142168936K46R0.28
STADchr9128257111Frame_Shift_Delrs763679060Y989Tfs*90.31
STADchr9128273902Frame_Shift_DelnovelN52Mfs*1050.1
STADchr9128258144Missense_Mutationrs761852586R755C0.5
STADchr9128267512Silentrs199949002A142A0.47
STADchr9128265855Silentrs199686673L226L0.28
STADchr9128257111Frame_Shift_Delrs763679060Y989Tfs*90.28
STADchr9128257458Missense_MutationNAR902K0.2
STADchr9128265854Missense_MutationnovelV227I0.28
STADchr9128258083Missense_Mutationrs185837255A775V0.17
STADchr9128257653Missense_Mutationrs748293881R862Q0.38
STADchr9128257173Missense_Mutationrs534286778R968H0.21
STADchr9128268133Missense_MutationnovelL114V0.13
STADchr9128261494Missense_MutationNAS404I0.1
STADchr9128259078Missense_MutationNAR674H0.18
STADchr9128262581SilentNAT345T0.04
STADchr9128258530Missense_MutationnovelE711D0.38
TGCTchr9128260614Missense_MutationnovelA510T0.25
UCECchr9128265668Missense_Mutationrs138823741R257G0.09
UCECchr9128262677Missense_MutationNAE313D0.29
UCECchr9128261216Missense_MutationnovelV432A0.73
UCECchr9128257496SilentNAV889V0.15
UCECchr91282558613'UTRnovel0.18
UCECchr9128259244Missense_Mutationrs760422757V647M0.4
UCECchr9128260111Missense_Mutationrs199538572E586K0.07
UCECchr9128257504Nonsense_MutationNAE887*0.34
UCECchr9128260609Silentrs770034806A511A0.35
UCECchr91282570623'UTRrs5757359580.44
UCECchr9128257888Missense_MutationNAR811H0.23
UCECchr9128258009Missense_MutationnovelA800T0.11
UCECchr9128258152Missense_MutationnovelA752V0.12
UCECchr9128261562Splice_SitenovelX382_splice0.19
UCECchr9128260581Missense_MutationNAR521C0.45
UCECchr9128257477Missense_Mutationrs368175525R896C0.49
UCECchr9128262655Missense_MutationNAL321F0.36
UCECchr91282561773'UTRnovel0.38
UCECchr91282569423'UTRnovel0.08
UCECchr9128260704Missense_MutationnovelA480T0.26
UCECchr9128257414Missense_MutationnovelG917W0.35
UCECchr9128259207Missense_Mutationrs778302995A659V0.29
UCECchr91282559093'UTRnovel0.54
UCECchr9128259079Missense_Mutationrs572082468R674C0.36
UCECchr9128262587Missense_MutationnovelE343D0.42
UCECchr9128257111Frame_Shift_Delrs763679060Y989Tfs*90.42
UCECchr9128260724Missense_Mutationrs746053247R473Q0.13
UCECchr91282568393'UTRnovel0.43
UCECchr9128258158Missense_MutationnovelE750G0.29
UCECchr9128257111Frame_Shift_Delrs763679060Y989Tfs*90.44
UCECchr9128257476Missense_Mutationrs544717555R896H0.31
UCECchr9128260611Missense_MutationnovelA511T0.41
UCECchr9128261515Missense_Mutationrs757840295A397V0.23
UCECchr9128268119Splice_RegionnovelT118T0.6
UCECchr9128257150Missense_Mutationrs775152615R976C0.26
UCECchr9128257512Missense_MutationnovelE884V0.41
UCECchr9128260162Missense_Mutationrs142411612A569T0.37
UCECchr9128261738Missense_Mutationrs367989119A358V0.34
UCECchr9128257218Missense_MutationnovelS953Y0.34
UCECchr9128259207Missense_Mutationrs778302995A659V0.43
UCECchr9128261493Silentrs148841715S404S0.47
UCECchr9128257112Missense_MutationnovelF988L0.51
UCECchr9128265621SilentnovelL272L0.15
UCECchr9128257194Missense_MutationnovelQ961R0.18
UCECchr9128272788Intronnovel0.05
UCECchr9128257701Missense_MutationNAY846F0.32
UCECchr9128257202Silentrs138565267P958P0.28
UCECchr9128257632Missense_MutationnovelS869N0.23
UCECchr9128267982Silentrs113956312T124T0.42
UCECchr9128268157Missense_MutationnovelH106N0.22
UCECchr9128259344SilentnovelD613D0.46
UCECchr9128260596Frame_Shift_DelnovelE516Sfs*420.4
UCECchr9128260558Missense_Mutationrs775850583M528I0.42
UCECchr9128257111Frame_Shift_Delrs763679060Y989Tfs*90.32
UCECchr9128257110Frame_Shift_InsNAY989Lfs*40.28
UCECchr9128266003SilentnovelH206H0.43
UCECchr9128258555Missense_MutationnovelR703Q0.39
UCECchr9128268144Missense_MutationnovelN110S0.26
UCECchr9128268523Missense_MutationnovelT70I0.4

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
LAMLDEL0.00520.24147
LGGAMP0.06040.21332
LIHCDEL0.25410.12467
PRADAMP0.08130.059049
THCADEL0.04010.24038
THYMDEL0.01630.022012
UCSDEL0.53570.089783

Survival Analysis
CancerP-value Q-value
KIRC0.027

Kaplan-Meier Survival Analysis

STAD0.044

Kaplan-Meier Survival Analysis

ACC0.0025

Kaplan-Meier Survival Analysis

PRAD0.02

Kaplan-Meier Survival Analysis

BRCA0.046

Kaplan-Meier Survival Analysis

COAD0.03

Kaplan-Meier Survival Analysis

UCEC0.019

Kaplan-Meier Survival Analysis

LGG0.02

Kaplan-Meier Survival Analysis

UVM0.05

Kaplan-Meier Survival Analysis

Drugs

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Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000167110 (Gene tree)
Gene ID
2801
Gene Symbol
GOLGA2
Alias
GM130|golgin-95
Full Name
golgin A2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
20,179 bases
Position
chr9:128,255,829-128,276,007
Accession
4425
RBP type
non-canonical RBP
Summary
The Golgi apparatus, which participates in glycosylation and transport of proteins and lipids in the secretory pathway, consists of a series of stacked cisternae (flattened membrane sacs). Interactions between the Golgi and microtubules are thought to be important for the reorganization of the Golgi after it fragments during mitosis. This gene encodes one of the golgins, a family of proteins localized to the Golgi. This encoded protein has been postulated to play roles in the stacking of Golgi cisternae and in vesicular transport. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of these variants has not been determined. [provided by RefSeq, Feb 2010]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
31142229Axonal autophagosome maturation defect through failure of ATG9A sorting underpins pathology in AP-4 deficiency syndrome.Autophagy2019 May 29:1-17Ivankovic Ddoi: 10.1080/15548627.2019.1615302
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000458730GOLGA2-203704-ENSP00000411598234 (aa)-H0Y7B8
ENST00000490628GOLGA2-210428-ENSP0000047360399 (aa)-R4GND7
ENST00000461031GOLGA2-204475--- (aa)--
ENST00000421699GOLGA2-2014260XM_005251930ENSP000004160971002 (aa)XP_005251987Q08379
ENST00000470630GOLGA2-207550--- (aa)--
ENST00000609374GOLGA2-2122973-ENSP00000476265990 (aa)-A0A2Q2TH77
ENST00000496221GOLGA2-211450--- (aa)--
ENST00000490257GOLGA2-2091964--- (aa)--
ENST00000486411GOLGA2-208591--- (aa)--
ENST00000610329GOLGA2-2132212-ENSP00000481685286 (aa)-A0A087WYC0
ENST00000468488GOLGA2-206531--- (aa)--
ENST00000611957GOLGA2-2144259-ENSP000004787991002 (aa)-Q08379
ENST00000639983GOLGA2-2151038-ENSP00000491980346 (aa)-A0A1W2PQY5
ENST00000450617GOLGA2-2021439-ENSP00000409271473 (aa)-B7ZC06
ENST00000462089GOLGA2-205766--- (aa)--
Gene Model
Click here to download ENSG00000167110's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000167110rs1131322479128263829?Body mass index30595370EFO_0004340
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000167110's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000137Golgi cis cisterna21873635.IBAComponent
GO:0000137Golgi cis cisterna17488291.IDAComponent
GO:0000139Golgi membrane-TASComponent
GO:0000922spindle pole-ISSComponent
GO:0005515protein binding15037601.15194699.15796781.16189514.16489344.18045989.18985028.19242490.20332113.20421892.21516116.21900206.21911577.21988832.23455922.24705354.25416956.25910212.26871637.27107012.29568061.IPIFunction
GO:0005794Golgi apparatus21873635.IBAComponent
GO:0005794Golgi apparatus15229288.17724343.20605918.22792322.IDAComponent
GO:0005801cis-Golgi network21873635.IBAComponent
GO:0005801cis-Golgi network18166528.21525244.22802641.23814182.24648492.IDAComponent
GO:0005874microtubule-IEAComponent
GO:0006486protein glycosylation16489344.IMPProcess
GO:0006888ER to Golgi vesicle-mediated transport-ISSProcess
GO:0006888ER to Golgi vesicle-mediated transport-TASProcess
GO:0007020microtubule nucleation26165940.IDAProcess
GO:0007020microtubule nucleation19242490.IMPProcess
GO:0007030Golgi organization21873635.IBAProcess
GO:0007098centrosome cycle19109421.IDAProcess
GO:0007098centrosome cycle18045989.IMPProcess
GO:0008017microtubule binding26165940.IDAFunction
GO:0008356asymmetric cell division-ISSProcess
GO:0010507negative regulation of autophagy22735382.IMPProcess
GO:0015031protein transport-IEAProcess
GO:0019901protein kinase binding20332113.IPIFunction
GO:0019905syntaxin binding18167358.IPIFunction
GO:0030134COPII-coated ER to Golgi transport vesicle18167358.IMPComponent
GO:0032091negative regulation of protein binding18167358.IDAProcess
GO:0032580Golgi cisterna membrane21873635.IBAComponent
GO:0032580Golgi cisterna membrane-ISSComponent
GO:0033116endoplasmic reticulum-Golgi intermediate compartment membrane-TASComponent
GO:0042802identical protein binding27107012.29568061.IPIFunction
GO:0045296cadherin binding25468996.HDAFunction
GO:0048208COPII vesicle coating-TASProcess
GO:0051225spindle assembly21873635.IBAProcess
GO:0051225spindle assembly18045989.IMPProcess
GO:0051289protein homotetramerization-ISSProcess
GO:0060050positive regulation of protein glycosylation22735382.IMPProcess
GO:0061676importin-alpha family protein binding-ISSFunction
GO:0072686mitotic spindle26165940.IDAComponent
GO:0090161Golgi ribbon formation16489344.17314401.20421892.IMPProcess
GO:0090166Golgi disassembly-ISSProcess
GO:0090306spindle assembly involved in meiosis-ISSProcess
GO:0090307mitotic spindle assembly26165940.IDAProcess
GO:1904668positive regulation of ubiquitin protein ligase activity-TASProcess
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