EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
23782473Clinicopathological features and CCT2 and PDIA2 expression in gallbladder squamous/adenosquamous carcinoma and gallbladder adenocarcinoma.World J Surg Oncol2013 Jun 19Zou Qdoi: 10.1186/1477-7819-11-143.
27363653MiR-330-5p regulates tyrosinase and PDIA3 expression and suppresses cell proliferation and invasion in cutaneous malignant melanoma.J Surg Res2016 Jun 15Su BBdoi: 10.1016/j.jss.2016.03.021
20596667ER-60 (PDIA3) is highly expressed in a newly established serous ovarian cancer cell line, YDOV-139.Int J Oncol2010 AugChay D-
30431082ERp57small interfering RNA silencing can enhance the sensitivity of drugresistant human ovarian cancer cells to paclitaxel.Int J Oncol2019 JanLi Sdoi: 10.3892/ijo.2018.4628
26772958Protein disulfide isomerase A3-specific Th1 effector cells infiltrate colon cancer tissue of patients with circulating anti-protein disulfide isomerase A3 autoantibodies.Transl Res2016 MayCaorsi Cdoi: 10.1016/j.trsl.2015.12.013
24490732AGR2, ERp57/GRP58, and some other human protein disulfide isomerases.Biochemistry (Mosc)2013 DecShishkin SSdoi: 10.1134/S000629791313004X.
26771192LEDGF/p75 Overexpression Attenuates Oxidative Stress-Induced Necrosis and Upregulates the Oxidoreductase ERP57/PDIA3/GRP58 in Prostate Cancer.PLoS One2016 Jan 15Basu Adoi: 10.1371/journal.pone.0146549
20035634Differential expression of apoptotic genes PDIA3 and MAP3K5 distinguishes between low- and high-risk prostate cancer.Mol Cancer2009 Dec 27Pressinotti NCdoi: 10.1186/1476-4598-8-130.
23957851Downregulation of ERp57 expression is associated with poor prognosis in early-stage cervical cancer.Biomarkers2013 NovChung Hdoi: 10.3109/1354750X.2013.827742
27492604Depletion of Dicer promotes epithelial ovarian cancer progression by elevating PDIA3 expression.Tumour Biol2016 OctZhu Y-
23625662A transcriptome-proteome integrated network identifies endoplasmic reticulum thiol oxidoreductase (ERp57) as a hub that mediates bone metastasis.Mol Cell Proteomics2013 AugSantana-Codina Ndoi: 10.1074/mcp.M112.022772
25605256ERp57 modulates STAT3 activity in radioresistant laryngeal cancer cells and serves as a prognostic marker for laryngeal cancer.Oncotarget2015 Feb 20Choe MH-
25081282Glucose-regulated protein 58 modulates β-catenin protein stability in a cervical adenocarcinoma cell line.BMC Cancer2014 Aug 1Liao CJdoi: 10.1186/1471-2407-14-555.
17188166Expression and prognostic significance of prothymosin-alpha and ERp57 in human gastric cancer.Surgery2007 JanLeys CM-
26004124MicroRNA-148a inhibits the proliferation and promotes the paclitaxel-induced apoptosis of ovarian cancer cells by targeting PDIA3.Mol Med Rep2015 SepZhao Sdoi: 10.3892/mmr.2015.3826
26125904PDIA3 and PDIA6 gene expression as an aggressiveness marker in primary ductal breast cancer.Genet Mol Res2015 Jun 26Ramos FSdoi: 10.4238/2015.June.26.4.
17456022The ERp57/GRp58/1,25D3-MARRS receptor: multiple functional roles in diverse cell systems.Curr Med Chem2007Khanal RC-
22266712Downregulation of ER60 protease inhibits cellular proliferation by inducing G1/S arrest in breast cancer cells in vitro.Anat Rec (Hoboken)2012 MarLwin ZMdoi: 10.1002/ar.22413
19714814Comparative proteomic analysis of paclitaxel sensitive A2780 epithelial ovarian cancer cell line and its resistant counterpart A2780TC1 by 2D-DIGE: the role of ERp57.J Proteome Res2009 AprCicchillitti L-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr15437443495'Flanknovel0.86
BLCAchr1543765482Missense_MutationNAT212S0.42
BLCAchr1543765509Missense_MutationnovelA221V0.4
BLCAchr1543763110Frame_Shift_DelnovelE170Sfs*30.25
BLCAchr1543756740Missense_Mutationrs553813975G113V0.13
BLCAchr15437441415'Flanknovel0.65
BLCAchr1543769603Missense_MutationNAH408R0.15
BRCAchr1543768576SilentnovelE372E0.06
BRCAchr15437730753'UTRnovel0.18
BRCAchr1543763097Missense_MutationnovelS165G0.12
BRCAchr15437441795'FlankNA0.22
BRCAchr15437713153'UTRnovel0.23
CESCchr1543746585Missense_MutationNAL16V1
CESCchr1543765997Missense_Mutationrs756782649N277S0.13
CESCchr1543761434SilentnovelV125V0.4
CESCchr15437728873'UTRnovel0.25
CESCchr15437713153'UTRnovel0.53
CESCchr15437441485'Flanknovel0.44
CESCchr1543746753Intronnovel0.38
COADchr15437730523'UTRnovel0.35
COADchr1543765560Missense_MutationnovelE238G0.18
COADchr1543771166Missense_MutationnovelV489A0.14
COADchr1543763187Missense_MutationNAE195K0.34
COADchr15437444055'Flanknovel0.28
COADchr1543746699Frame_Shift_InsNAW56Lfs*110.47
COADchr1543771204Frame_Shift_DelNAQ502Rfs*460.48
COADchr1543756751Nonsense_MutationNAG117*0.1
COADchr1543746699Missense_MutationnovelA54T0.07
COADchr15437445165'Flankrs5401884500.18
COADchr1543766906Missense_MutationNAF342L0.76
COADchr1543746711Splice_RegionNA0.16
COADchr1543765923Missense_MutationnovelK252N0.1
COADchr1543768490Missense_Mutationrs757380536R344C0.11
COADchr1543765520Frame_Shift_InsNAM227Nfs*70.34
ESCAchr1543746656SilentnovelI39I0.26
GBMchr1543763164Missense_MutationNAT187M0.46
GBMchr1543756651Splice_RegionnovelV83V0.32
GBMchr1543765554Missense_MutationnovelI236S0.12
GBMchr15437729973'UTRnovel0.4
GBMchr1543746726Intronnovel0.34
GBMchr15437444455'Flanknovel0.78
GBMchr1543766759Missense_MutationnovelA293S0.09
GBMchr1543753882Missense_MutationnovelG76R0.15
HNSCchr15437441575'Flanknovel0.12
HNSCchr15437450615'Flanknovel0.19
HNSCchr1543766773SilentnovelL297L0.29
KIRCchr1543768543SilentNAL361L0.36
KIRPchr15437442865'Flanknovel0.57
LAMLchr1543756669SilentnovelT89T0.08
LAMLchr1543761427Missense_MutationnovelG123E0.08
LAMLchr1543766908Splice_RegionnovelF342F0.12
LGGchr15437464785'UTRnovel0.53
LGGchr15437712293'UTRnovel0.13
LGGchr15437712303'UTRnovel0.13
LIHCchr1543768548Missense_MutationnovelR363I0.39
LIHCchr1543751674Intronnovel0.22
LUADchr1543765958Missense_MutationNAY264F0.64
LUADchr1543746602SilentNAL21L0.28
LUADchr1543765517Missense_Mutationrs772223861E224Q0.13
LUADchr1543765969Missense_MutationNAD268Y0.1
LUADchr1543761456Nonsense_MutationnovelG133*0.55
LUADchr15437451545'Flanknovel0.11
LUADchr1543771171Missense_MutationnovelQ491E0.53
LUADchr1543766805Missense_MutationnovelS308I0.1
LUSCchr1543765463Missense_MutationnovelF206L0.29
LUSCchr1543769556Missense_MutationnovelN392K0.1
LUSCchr1543770249Splice_SiteNAX423_splice0.12
LUSCchr1543770250Missense_MutationNAL423I0.13
LUSCchr1543761503SilentnovelF148F0.07
LUSCchr1543765475Missense_Mutationrs755677588H210Y0.12
OVchr15437443145'Flanknovel0.16
OVchr1543766819Missense_MutationnovelD313N0.07
OVchr1543756657Nonsense_MutationnovelC85*0.07
OVchr15437451695'FlankNA0.76
OVchr1543765929Missense_MutationNAL254F0.87
OVchr1543768508Nonsense_MutationnovelE350*0.05
PAADchr15437450485'Flanknovel0.18
PAADchr1543766874Missense_MutationnovelA331D0.04
PAADchr1543770295Missense_MutationNAA438T0.18
PRADchr1543771206Missense_MutationnovelQ502H0.42
READchr1543768536Missense_MutationnovelG359A0.08
READchr1543766911Splice_SitenovelX343_splice0.27
READchr1543756718Missense_Mutationrs779107688F106L0.76
READchr1543766908Missense_MutationnovelF342L0.04
READchr15437729473'UTRnovel0.41
READchr15437731003'UTRrs7457110180.13
SARCchr15437441915'Flanknovel0.52
SKCMchr15437730393'UTRnovel0.36
SKCMchr1543761452SilentNAQ131Q0.2
SKCMchr1543770270Silentrs371186647I429I0.22
SKCMchr1543771194Missense_MutationNAK498N0.15
SKCMchr1543761422Splice_SitenovelX122_splice0.26
SKCMchr1543761494SilentNAF145F0.2
SKCMchr1543756689Missense_MutationNAG96E0.08
SKCMchr1543770295Missense_MutationNAA438T0.28
SKCMchr1543763115Missense_MutationNAF171L0.24
STADchr15437440955'Flanknovel0.33
STADchr1543746669Missense_MutationnovelS44P0.18
STADchr15437441085'Flanknovel0.11
STADchr1543756752Missense_MutationNAG117V0.42
STADchr15437442925'Flanknovel0.37
STADchr15437441745'Flanknovel0.55
STADchr15437445595'Flanknovel0.17
STADchr15437450665'Flanknovel0.42
STADchr15437712663'UTRnovel0.42
STADchr1543766753Missense_MutationnovelL291M0.21
THCAchr1543771213Frame_Shift_InsnovelL505Qfs*500.07
UCECchr15437441465'Flanknovel0.39
UCECchr1543768490Missense_Mutationrs757380536R344C0.36
UCECchr15437443185'Flanknovel0.22
UCECchr1543770327Splice_RegionnovelR448R0.27
UCECchr1543766727Splice_SitenovelX282_splice0.03
UCECchr1543763152Missense_Mutationrs759578661R183Q0.34
UCECchr1543753862Missense_MutationnovelA69D0.42
UCECchr15437451115'Flanknovel0.24
UCECchr15437439735'Flanknovel0.38
UCECchr1543746612Missense_MutationnovelS25P0.54
UCECchr15437441085'Flanknovel0.11
UCECchr1543766908Missense_MutationnovelF342L0.33
UCECchr15437445165'Flankrs5401884500.44
UCECchr1543769530Nonsense_MutationNAE384*0.44
UCECchr15437450825'Flanknovel0.29
UCECchr15437714933'UTRnovel0.41
UCECchr1543751689Intronnovel0.4
UCECchr15437450455'Flanknovel0.45
UCECchr15437730453'UTRnovel0.39
UCECchr15437441745'Flanknovel0.81
UCECchr1543769632Nonsense_MutationnovelE418*0.5
UCECchr15437450885'Flanknovel0.36
UCECchr1543756704Missense_MutationnovelP101Q0.34
UCECchr1543765467Missense_Mutationrs113762568R207H0.1
UCECchr1543768490Missense_Mutationrs757380536R344C0.31
UCECchr15437730303'UTRrs5448001140.48
UCECchr15437727973'UTRnovel0.29
UCECchr15437450935'Flanknovel0.34
UCECchr1543751590Intronnovel0.27
UCECchr1543763120Frame_Shift_DelnovelA174Qfs*50.36
UCECchr1543765947SilentnovelL260L0.26
UCECchr1543770255Frame_Shift_InsnovelD426Rfs*150.37
UCECchr1543765533Missense_MutationnovelS229N0.07
UCECchr1543765541Missense_MutationNAI232F0.33
UCECchr1543753874Missense_MutationnovelR73I0.61
UCECchr1543771188Missense_MutationNAK496N0.56
UCECchr1543763120Frame_Shift_DelnovelA174Qfs*50.48
UCECchr1543765539Missense_MutationnovelK231T0.05
UCECchr15437726773'UTRnovel0.63
UCECchr1543765520Frame_Shift_InsNAM227Nfs*70.31
UCECchr15437712393'UTRnovel0.45
UCECchr15437451715'FlankNA0.05
UCECchr15437450975'Flanknovel0.05
UCECchr1543753841Missense_MutationnovelR62K0.36
UCECchr15437713353'UTRnovel0.38
UCECchr15437728803'UTRnovel0.2
UCECchr15437442605'Flanknovel0.4
UCECchr1543753861Missense_MutationNAA69T0.32
UCECchr1543765508Missense_MutationnovelA221T0.31
UCECchr1543770286Missense_MutationnovelD435Y0.36
UCECchr15437714703'UTRnovel0.17
UCSchr1543756693SilentnovelV97V0.37
UCSchr15437441875'Flanknovel0.21

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.22220.079424
CESCDEL0.18640.00049652
COADDEL0.34372.3878e-07
GBMDEL0.2083.453e-12
HNSCDEL0.16280.11567
KICHAMP0.25760.21756
KIRPDEL0.10760.2062
LUADDEL0.38186.8561e-07
MESODEL0.27594.5411e-10
PAADDEL0.1250.13216
READDEL0.44240.025797
SARCDEL0.18290.18974
UCECDEL0.23017.1012e-08

Survival Analysis
CancerP-value Q-value
KIRC0.0067

Kaplan-Meier Survival Analysis

HNSC0.00066

Kaplan-Meier Survival Analysis

SKCM0.011

Kaplan-Meier Survival Analysis

KIRP0.0013

Kaplan-Meier Survival Analysis

PAAD0.013

Kaplan-Meier Survival Analysis

CESC0.0014

Kaplan-Meier Survival Analysis

LAML0.049

Kaplan-Meier Survival Analysis

KICH0.024

Kaplan-Meier Survival Analysis

UCEC0.00018

Kaplan-Meier Survival Analysis

GBM0.005

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

UVM0.00016

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000167004 (Gene tree)
Gene ID
2923
Gene Symbol
PDIA3
Alias
P58|ERp61|ERp57|ERp60|GRP57|PI-PLC|HsT17083|GRP58
Full Name
protein disulfide isomerase family A member 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
26,888 bases
Position
chr15:43,746,392-43,773,279
Accession
4606
RBP type
non-canonical RBP
Summary
This gene encodes a protein of the endoplasmic reticulum that interacts with lectin chaperones calreticulin and calnexin to modulate folding of newly synthesized glycoproteins. The protein was once thought to be a phospholipase; however, it has been demonstrated that the protein actually has protein disulfide isomerase activity. It is thought that complexes of lectins and this protein mediate protein folding by promoting formation of disulfide bonds in their glycoprotein substrates. This protein also functions as a molecular chaperone that prevents the formation of protein aggregates. [provided by RefSeq, Dec 2016]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18370413Proteomic analysis of diaminochlorotriazine adducts in wistar rat pituitary glands and LbetaT2 rat pituitary cells.Chem Res Toxicol2008 AprDooley GPdoi: 10.1021/tx700386f
24823364Identification of miR-494 direct targets involved in senescence of human diploid fibroblasts.FASEB J2014 AugComegna Mdoi: 10.1096/fj.13-239129
23791840Superoxide dismutase 1 overexpression in mice abolishes maternal diabetes-induced endoplasmic reticulum stress indiabetic embryopathy.Am J Obstet Gynecol2013 OctWang Fdoi: 10.1016/j.ajog.2013.06.037
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000446523PDIA3-203596-ENSP0000039111175 (aa)-F8WBW5
ENST00000300289PDIA3-2013727-ENSP00000300289505 (aa)-P30101
ENST00000455250PDIA3-204725-ENSP00000389906123 (aa)-H7BZJ3
ENST00000497349PDIA3-206739--- (aa)--
ENST00000434494PDIA3-2022107-ENSP0000039800571 (aa)-F8WBS6
ENST00000469684PDIA3-205374--- (aa)--
Gene Model
Click here to download ENSG00000167004's gene model file
Pathways
Pathway IDPathway NameSource
hsa04141Protein processing in endoplasmic reticulumKEGG
hsa04612Antigen processing and presentationKEGG
hsa05163Human cytomegalovirus infectionKEGG
hsa05168Herpes simplex virus 1 infectionKEGG
hsa05169Epstein-Barr virus infectionKEGG
hsa05170Human immunodeficiency virus 1 infectionKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000167004Platelet Count5.118e-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000167004rs30876571543771661ASelf-reported math ability (MTAG)30038396[0.0082-0.016] unit decrease0.0121EFO_0004875
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000167004's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000167004PDIA310093.069ENSMUSG00000027248Pdia310093.069Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002474antigen processing and presentation of peptide antigen via MHC class I-TASProcess
GO:0002479antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent-TASProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0003756protein disulfide isomerase activity21873635.IBAFunction
GO:0004197cysteine-type endopeptidase activity9399589.TASFunction
GO:0004629phospholipase C activity3398923.TASFunction
GO:0005515protein binding15896298.16905107.17055437.17170699.17947644.20802462.21057456.21670307.21941299.22665516.23826168.26496610.IPIFunction
GO:0005615extracellular space19995400.IDAComponent
GO:0005634nucleus21630459.HDAComponent
GO:0005783endoplasmic reticulum21873635.IBAComponent
GO:0005783endoplasmic reticulum23826168.IDAComponent
GO:0005783endoplasmic reticulum16130169.TASComponent
GO:0005788endoplasmic reticulum lumen-TASComponent
GO:0005925focal adhesion21423176.HDAComponent
GO:0006457protein folding21873635.IBAProcess
GO:0006457protein folding-TASProcess
GO:0006508proteolysis-IEAProcess
GO:0009986cell surface21873635.IBAComponent
GO:0009986cell surface19995400.IDAComponent
GO:0015036disulfide oxidoreductase activity22013210.TASFunction
GO:0015037peptide disulfide oxidoreductase activity16677074.IDAFunction
GO:0034975protein folding in endoplasmic reticulum22013210.TASProcess
GO:0034976response to endoplasmic reticulum stress21873635.IBAProcess
GO:0042470melanosome-IEAComponent
GO:0042802identical protein binding16905107.IPIFunction
GO:0042824MHC class I peptide loading complex17947644.21263072.IDAComponent
GO:0045335phagocytic vesicle-TASComponent
GO:0045454cell redox homeostasis-IEAProcess
GO:0055038recycling endosome membrane-TASComponent
GO:0055114oxidation-reduction process-IEAProcess
GO:0070062extracellular exosome19199708.HDAComponent
GO:0098761cellular response to interleukin-7-IEAProcess
GO:2001238positive regulation of extrinsic apoptotic signaling pathway-IEAProcess
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