EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
26486082The potent tumor suppressor miR-497 inhibits cancer phenotypes in nasopharyngeal carcinoma by targeting ANLN and HSPA4L.Oncotarget2015 Nov 3Wang Sdoi: 10.18632/oncotarget.5651.
21946539Expression of a mutant HSP110 sensitizes colorectal cancer cells to chemotherapy and improves disease prognosis.Nat Med2011 Sep 25Dorard Cdoi: 10.1038/nm.2457.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr41278328853'UTRnovel0.84
BLCAchr4127794089SilentnovelS40S0.22
BLCAchr4127811514Missense_MutationnovelI486V0.32
BLCAchr4127830777Nonsense_MutationnovelS769*0.23
BLCAchr4127801221Missense_MutationNAM171I0.2
BLCAchr4127795767Splice_SitenovelX56_splice0.5
BLCAchr4127782620Nonsense_MutationnovelE24*0.34
BLCAchr4127805102Missense_MutationnovelE339Q0.11
BLCAchr4127801842Missense_MutationNAR196T0.58
BLCAchr4127782619SilentnovelI23I0.16
BLCAchr4127830689Missense_MutationNAC740R0.35
BLCAchr4127782635Missense_MutationnovelE29K0.25
BRCAchr4127830766SilentNAV765V0.36
BRCAchr4127803858Missense_Mutationrs759610355S298F0.29
BRCAchr4127805692Silentrs577260042A381A0.32
BRCAchr4127811505Missense_Mutationrs141362649R483C0.17
BRCAchr41278330233'UTRnovel0.06
BRCAchr41278329993'UTRnovel0.17
BRCAchr41278331193'UTRnovel0.07
CESCchr4127805100Missense_Mutationrs139697778I338T0.67
COADchr4127827391SilentNAL711L0.35
COADchr4127782636Missense_MutationnovelE29G0.28
COADchr4127801147Frame_Shift_DelnovelF148Lfs*90.25
COADchr4127820470Frame_Shift_DelNAG575Efs*180.36
COADchr4127795819Nonsense_MutationnovelR73*0.07
COADchr4127794079Missense_Mutationrs766607334A37V0.24
COADchr4127822859Silentrs755149556L635L0.36
COADchr4127832701Missense_MutationNAN783Y0.15
COADchr41278329073'UTRrs7781199800.13
COADchr4127808044SilentnovelV431V0.32
COADchr4127803741Missense_MutationNAN259S0.24
COADchr4127805158Missense_Mutationrs746127288F357L0.2
COADchr4127811505Missense_Mutationrs141362649R483C0.12
COADchr4127827356Missense_MutationNAK700Q0.35
COADchr4127795775Missense_Mutationrs200226261T58M0.37
ESCAchr4127805168Missense_MutationnovelD361H0.44
GBMchr4127811573Silentrs367749617G505G0.55
GBMchr4127811536Frame_Shift_DelnovelA493Vfs*50.09
GBMchr4127801868Missense_MutationnovelH205Y0.05
HNSCchr4127805110SilentnovelV341V0.63
HNSCchr4127803747Missense_Mutationrs773358656R261Q0.24
HNSCchr4127820449Missense_MutationnovelD566H0.37
HNSCchr4127822787Missense_MutationnovelD611Y0.38
HNSCchr4127827338Missense_MutationnovelE694Q0.3
HNSCchr4127811542Missense_MutationnovelA495V0.24
HNSCchr4127832772Missense_MutationnovelH806Q0.16
KIRCchr4127804026SilentNAQ308Q0.32
KIRPchr4127805102Frame_Shift_DelnovelI340Efs*80.21
LGGchr4127832736Missense_MutationNAE794D0.19
LGGchr4127818407Missense_MutationNAG554E0.39
LUADchr4127798711Splice_SitenovelX143_splice0.16
LUADchr4127832780Missense_MutationNAP809Q0.06
LUADchr4127811621Frame_Shift_InsnovelN522Lfs*50.25
LUADchr4127811623Frame_Shift_InsnovelK523Qfs*30.25
LUADchr4127798682SilentnovelK134K0.18
LUADchr41277825335'UTRnovel0.23
LUADchr4127801793Missense_MutationNAA180S0.44
LUADchr4127830755Nonsense_MutationnovelQ762*0.26
LUADchr4127820471Missense_MutationnovelK573T0.17
LUSCchr4127820527Missense_MutationnovelL592V0.29
LUSCchr4127803849Missense_MutationNAL295P0.22
LUSCchr4127803815Missense_MutationNAL284F0.34
LUSCchr4127804018Frame_Shift_DelnovelE307Wfs*80.13
LUSCchr4127804088Splice_SiteNAX329_splice0.21
LUSCchr4127811611Missense_MutationnovelF518C0.17
OVchr4127794090SilentNAL41L0.84
OVchr4127808073Missense_MutationnovelE441A0.06
OVchr4127830731Missense_Mutationrs756784442A754S0.27
OVchr4127794127Missense_MutationnovelK53R0.37
PAADchr4127794088Missense_MutationnovelS40L0.16
PRADchr4127805123Nonsense_MutationNAR346*0.29
PRADchr4127811540SilentNAS494S0.36
PRADchr4127827316SilentnovelQ686Q0.34
READchr4127798661Missense_MutationNAE127D0.2
READchr4127795878Missense_MutationNAQ92H0.36
READchr4127782591Missense_MutationnovelY14C0.39
READchr4127798670SilentnovelE130E0.39
READchr41278330123'UTRnovel0.37
READchr4127805144Missense_MutationNAQ353K0.18
SARCchr41278329813'UTRnovel0.53
SKCMchr4127811612SilentNAF518F0.38
SKCMchr4127822796Missense_MutationnovelE614K0.16
SKCMchr4127811505Missense_Mutationrs141362649R483C0.31
SKCMchr4127801154Missense_MutationNAT149I0.3
SKCMchr4127823574Missense_Mutationrs376346224G666R0.4
SKCMchr4127823575Missense_MutationnovelG666E0.39
SKCMchr4127811548Frame_Shift_InsnovelI498Nfs*50.07
SKCMchr4127811568Missense_MutationNAE504K0.15
SKCMchr4127830739Missense_MutationnovelN756K0.15
SKCMchr4127801147Frame_Shift_DelnovelF148Lfs*90.33
SKCMchr4127795887SilentNAP95P0.62
SKCMchr4127804038SilentNAS312S0.21
SKCMchr4127803651Missense_MutationnovelP229L0.06
SKCMchr4127795831Missense_MutationNAD77N0.4
SKCMchr4127794115Missense_MutationNAG49E0.45
SKCMchr4127811516SilentNAI486I0.33
SKCMchr4127811505Missense_Mutationrs141362649R483C0.65
SKCMchr4127830653Missense_MutationNAH728Y0.37
SKCMchr4127805787Missense_MutationNAG413E0.5
STADchr4127805691Missense_Mutationrs768194196A381V0.13
STADchr4127820470Frame_Shift_DelNAG575Efs*180.29
STADchr4127805691Missense_Mutationrs768194196A381V0.28
STADchr4127803795Missense_MutationNAM277T0.22
STADchr4127801795Silentrs769513282A180A0.22
STADchr4127804015Missense_MutationNAQ305E0.36
STADchr4127795779Silentrs75776460N59N0.14
STADchr4127804068SilentNAK322K0.32
STADchr4127818398Missense_MutationNAD551G0.32
STADchr4127801795Silentrs769513282A180A0.25
STADchr4127830642Frame_Shift_DelnovelR725Dfs*210.38
STADchr4127827335Missense_MutationNAM693V0.09
STADchr41278328873'UTRnovel0.14
STADchr4127801916Missense_MutationnovelK221Q0.3
STADchr4127830796SilentNAS775S0.22
STADchr4127811462SilentNAF468F0.37
STADchr4127832800Missense_MutationNAT816A0.21
STADchr4127805207Missense_MutationNAR374G0.13
STADchr4127818420Missense_MutationNAK558N0.08
THCAchr41278328983'UTRnovel0.07
UCECchr4127801794Missense_Mutationrs137878800A180V0.27
UCECchr4127832682Splice_SiteNAX777_splice0.18
UCECchr4127782569Missense_MutationNAD7Y0.27
UCECchr4127805158Missense_Mutationrs746127288F357L0.16
UCECchr4127811505Missense_Mutationrs141362649R483C0.32
UCECchr4127805198Missense_MutationnovelA371T0.45
UCECchr41278329203'UTRrs7540053160.38
UCECchr4127803746Missense_MutationNAR261W0.4
UCECchr4127827310Silentrs61748160Y684Y0.44
UCECchr41278328963'UTRnovel0.38
UCECchr41278328823'UTRnovel0.39
UCECchr4127805793Missense_MutationnovelG415E0.11
UCECchr4127811505Missense_Mutationrs141362649R483C0.4
UCECchr4127832697Missense_MutationNAF781L0.37
UCECchr4127832849Missense_MutationNAS832F0.46
UCECchr4127805146Missense_MutationnovelQ353H0.26
UCECchr4127801794Missense_Mutationrs137878800A180V0.29
UCECchr4127823622Splice_RegionnovelK682delinsRDQ0.05
UCECchr4127801824Missense_MutationNAP190Q0.16
UCECchr41278330443'UTRnovel0.36
UCECchr4127818358Nonsense_MutationnovelQ538*0.23
UCECchr4127805795Splice_SitenovelX415_splice0.08
UCECchr4127782565Silentrs111543768G5G0.31
UCECchr41278329443'UTRnovel0.38
UCECchr41277824505'UTRnovel0.19
UCECchr4127795885Missense_MutationnovelP95S0.27
UCECchr4127820470Frame_Shift_DelNAG575Efs*180.41
UCECchr4127794105Nonsense_Mutationrs140639721R46*0.29
UCECchr4127823626Splice_SitenovelX682_splice0.38
UCECchr4127805691Missense_Mutationrs768194196A381V0.38
UCECchr4127805705Missense_MutationNAA386T0.3
UCECchr4127832697Missense_MutationNAF781L0.45
UCECchr4127782653Missense_MutationNAT35A0.2
UCECchr4127820470Frame_Shift_DelNAG575Efs*180.37
UCECchr4127811540SilentNAS494S0.49
UCECchr4127805124Missense_Mutationrs755578805R346Q0.34
UCECchr4127811505Missense_Mutationrs141362649R483C0.18
UCECchr4127801147Frame_Shift_DelnovelF148Lfs*90.38
UCECchr4127822864SilentnovelG636G0.41
UCECchr4127823563Missense_MutationnovelL662R0.38
UCECchr41278329203'UTRrs7540053160.09
UCECchr4127782615Missense_MutationNAG22D0.44
UCECchr4127801859Missense_MutationnovelD202N0.41
UCECchr4127811505Missense_Mutationrs141362649R483C0.59
UCECchr4127808034Missense_MutationNAF428C0.21
UCECchr4127832697Missense_MutationNAF781L0.23
UCECchr4127804010Splice_SitenovelX303_splice0.36
UCECchr4127803768Missense_MutationnovelQ268R0.34
UCECchr4127820470Frame_Shift_DelNAG575Efs*180.48
UCECchr41277824225'UTRnovel0.26
UCECchr4127801817Missense_MutationNAL188I0.38
UCECchr4127803744Missense_MutationNAS260Y0.09
UCECchr4127811505Missense_Mutationrs141362649R483C0.29
UCECchr4127798685SilentnovelK135K0.22
UCECchr4127801229Missense_MutationnovelT174N0.23
UCECchr4127808103Missense_Mutationrs760776765E451G0.25
UCECchr4127811505Missense_Mutationrs141362649R483C0.41
UCECchr41278329433'UTRnovel0.48
UCECchr4127798590Missense_Mutationrs766704348R104W0.34
UCECchr41277825185'UTRnovel0.23
UCECchr4127820436SilentnovelV561V0.22
UCSchr4127820463Missense_MutationnovelQ570H0.21

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.12222.13e-13
LUADDEL0.20930.050802
MESODEL0.36780.075661
PRADDEL0.07720.0026708

Survival Analysis
CancerP-value Q-value
THYM0.0025

Kaplan-Meier Survival Analysis

KIRC0.00011

Kaplan-Meier Survival Analysis

LUSC0.031

Kaplan-Meier Survival Analysis

PAAD0.041

Kaplan-Meier Survival Analysis

BLCA0.00064

Kaplan-Meier Survival Analysis

READ0.022

Kaplan-Meier Survival Analysis

LAML0.0051

Kaplan-Meier Survival Analysis

KICH0.033

Kaplan-Meier Survival Analysis

LIHC0.0022

Kaplan-Meier Survival Analysis

LGG0.011

Kaplan-Meier Survival Analysis

UVM0.0074

Kaplan-Meier Survival Analysis

OV0.034

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000164070 (Gene tree)
Gene ID
22824
Gene Symbol
HSPA4L
Alias
APG-1|Osp94|HSPH3
Full Name
heat shock protein family A (Hsp70) member 4 like
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
58,913 bases
Position
chr4:127,781,821-127,840,733
Accession
17041
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is heat shock inducible and may act as a chaperone. The encoded protein can protect the heat-shocked cell against the harmful effects of aggregated proteins. This gene is highly expressed in leukemia cells and may be a good target for therapeutic intervention. Several transcripts encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000508776HSPA4L-2043020-ENSP00000422482839 (aa)-O95757
ENST00000508549HSPA4L-2031822XM_011531745ENSP00000427305531 (aa)XP_011530047D6RJ96
ENST00000296464HSPA4L-20110790-ENSP00000296464839 (aa)-O95757
ENST00000515262HSPA4L-205648--- (aa)--
ENST00000505726HSPA4L-2022639-ENSP00000425645813 (aa)-E9PDE8
Gene Model
Click here to download ENSG00000164070's gene model file
Pathways
Pathway IDPathway NameSource
hsa04141Protein processing in endoplasmic reticulumKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000164070Cholesterol, LDL5.15425798871414E-617903299
ENSG00000164070Lipoproteins, VLDL8.42420657511944E-517903299
ENSG00000164070Thyrotropin2.75307362773281E-617903292
ENSG00000164070Osteoporosis3.58303311491027E-617903295
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000164070rs1872798214127836228AMajor depressive disorder29317602[0.24-0.6] unit decrease0.42EFO_0003761
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000164070's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005524ATP binding-ISSFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISSComponent
GO:0005737cytoplasm-ISSComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol21231916.IDAComponent
GO:0006457protein folding-ISSProcess
GO:0006986response to unfolded protein-ISSProcess
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