EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
26464681Low PBRM1 identifies tumor progression and poor prognosis in breast cancer.Int J Clin Exp Pathol2015 Aug 1Mo D-
25978027PBRM1 suppresses bladder cancer by cyclin B1 induced cell cycle arrest.Oncotarget2015 Jun 30Huang L-
22949125Loss of PBRM1 expression is associated with renal cell carcinoma progression.Int J Cancer2013 Jan 15Pawowski Rdoi: 10.1002/ijc.27822
12487023cDNA cloning of the human polybromo-1 gene on chromosome 3p21.DNA Seq2002 AugHorikawa I-
23644518Aberrant promoter hypermethylation of PBRM1, BAP1, SETD2, KDM6A and other chromatin-modifying genes is absent or rare in clear cell RCC.Epigenetics2013 MayIbragimova Idoi: 10.4161/epi.24552
28082722Inactivation of the PBRM1 tumor suppressor gene amplifies the HIF-response in VHL-/- clear cell renal carcinoma.Proc Natl Acad Sci U S A2017 Jan 31Gao Wdoi: 10.1073/pnas.1619726114
29169846PBRM1 and VHL expression correlate in human clear cell renal cell carcinoma with differential association with patient's overall survival.Urol Oncol2018 MarHgner Adoi: 10.1016/j.urolonc.2017.10.027
30660076Expression and Mutation Patterns of PBRM1, BAP1 and SETD2 Mirror Specific Evolutionary Subtypes in Clear Cell Renal Cell Carcinoma.Neoplasia2019 FebBihr Sdoi: 10.1016/j.neo.2018.12.006
28940253The epigenetic modifier PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer.J Pathol2018 JanShu XSdoi: 10.1002/path.4986
15735765The 3p21 candidate tumor suppressor gene BAF180 is normally expressed in human lung cancer.Oncogene2005 Apr 14Sekine I-
23867514PBRM1 and BAP1 as novel targets for renal cell carcinoma.Cancer J2013 Jul-AugBrugarolas Jdoi: 10.1097/PPO.0b013e3182a102d1.
21248752Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.Nature2011 Jan 27Varela Idoi: 10.1038/nature09639
28007623Small Cell Lung Cancer Exhibits Frequent Inactivating Mutations in the Histone Methyltransferase KMT2D/MLL2: CALGB 151111 (Alliance).J Thorac Oncol2017 AprAugert Adoi: 10.1016/j.jtho.2016.12.011

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr352550578SilentnovelP1580P0.56
ACCchr352609635Missense_MutationnovelA749S0.14
BLCAchr352609618Frame_Shift_DelNAV755Sfs*200.08
BLCAchr352603587Missense_MutationnovelE905Q0.24
BLCAchr352563443Missense_MutationNAI1309T0.21
BLCAchr352586369Intronnovel0.42
BLCAchr352609545Missense_Mutationrs751804410Q779E0.46
BLCAchr352662202SilentNAQ153Q0.12
BLCAchr352586526Missense_MutationnovelR1096C0.45
BLCAchr352564141Missense_MutationNAN1262D0.56
BLCAchr352662220SilentnovelT147T0.61
BLCAchr352548200Nonsense_MutationnovelE1645*0.34
BLCAchr352554846Missense_MutationnovelP1496L0.17
BLCAchr352658298Missense_MutationNAL182F0.07
BLCAchr352609344Missense_MutationnovelE846K0.07
BLCAchr352563396Missense_MutationNAD1325N0.42
BLCAchr352561906Missense_MutationnovelM1383I0.11
BLCAchr352548174SilentNAL1653L0.27
BLCAchr352586667Missense_MutationNAE1049K0.2
BLCAchr352587511Splice_SiteNAX989_splice0.15
BLCAchr352634687Missense_MutationnovelE406K0.23
BLCAchr352634789Missense_MutationnovelE372Q0.08
BLCAchr352587353Splice_RegionnovelK1041K0.11
BLCAchr352579193Missense_MutationNAE1132K0.43
BLCAchr352609581Missense_MutationNAE767Q0.6
BLCAchr352617333Missense_MutationNAE583K0.35
BLCAchr352564069Missense_MutationnovelD1286N0.41
BLCAchr352550509Frame_Shift_InsnovelL1604Afs*120.27
BLCAchr352550510Frame_Shift_InsnovelR1603Pfs*140.28
BLCAchr352644791Splice_SitenovelX272_splice0.41
BLCAchr352561936Missense_MutationnovelK1373N0.13
BRCAchr352634721Missense_MutationNAR394S0.19
BRCAchr3525478953'Flanknovel0.22
BRCAchr352615442SilentnovelA611A0.38
BRCAchr352550767Missense_MutationNAG1554R0.29
BRCAchr352550810Missense_MutationNAM1539I0.2
BRCAchr352609663SilentNAN739N0.19
BRCAchr352617322Missense_MutationNAM586I0.31
BRCAchr352679685SilentnovelT9T0.06
BRCAchr3525475463'Flanknovel0.17
BRCAchr352554750Frame_Shift_InsnovelP1528Lfs*880.15
BRCAchr352589127Missense_MutationnovelE970Q0.04
BRCAchr352648383Frame_Shift_InsnovelN258Kfs*60.71
BRCAchr352617499Missense_MutationnovelF527L0.11
CESCchr352548210Silentrs138449080S1641S0.14
CESCchr352579134SilentnovelL1151L0.18
CESCchr352662180Missense_Mutationrs769010138D161H0.38
CESCchr352648367Missense_MutationnovelE264K0.53
CESCchr352564072Missense_MutationnovelD1285N0.18
CESCchr352634741Nonsense_MutationNAQ388*0.23
CESCchr352634775Missense_MutationNAI376M0.26
CESCchr352548225Silentrs758916169R1636R0.47
CESCchr352617356Missense_MutationNAI575N0.57
CESCchr3525465983'Flanknovel0.62
CESCchr352634665Nonsense_MutationnovelS413*0.45
CESCchr352634759Frame_Shift_DelnovelV382Ffs*220.29
CESCchr3525460533'Flanknovel0.4
CHOLchr352617318Nonsense_MutationnovelE588*0.24
CHOLchr352627346Nonsense_MutationnovelR490*0.49
CHOLchr352587422In_Frame_InsnovelV1017_F1018insL0.61
CHOLchr352617480Nonsense_MutationNAR534*0.12
CHOLchr352678508Frame_Shift_DelnovelR74Sfs*180.71
CHOLchr352609643Missense_MutationnovelY746C0.16
CHOLchr352586633In_Frame_DelnovelD1055_E1060del0.31
CHOLchr352628923Nonsense_MutationNAR472*0.28
CHOLchr352644774Nonsense_MutationNAK277*0.56
CHOLchr352563283Frame_Shift_DelnovelP1360Lfs*210.64
COADchr352587503Frame_Shift_DelNAK991Nfs*230.28
COADchr352609927Frame_Shift_DelNAK651Nfs*50.1
COADchr352644711Nonsense_MutationNAR298*0.31
COADchr3526797245'Flankrs7806981470.17
COADchr352563455Missense_MutationNAL1305Q0.29
COADchr352586523Missense_Mutationrs143085435V1097M0.29
COADchr352609418Missense_MutationNAT821K0.15
COADchr352658270Missense_MutationNAA192T0.05
COADchr352678564Nonsense_MutationNAR58*0.43
COADchr352609501Missense_MutationNAQ793H0.06
COADchr352603673Missense_MutationNAR876H0.3
COADchr352644774Nonsense_MutationNAK277*0.47
COADchr352563324Frame_Shift_DelNAL1349Wfs*350.5
COADchr352548222Silentrs527392994D1637D0.3
COADchr352576673Missense_MutationNAG1187R0.32
COADchr352644768Frame_Shift_Delrs771618422I279Yfs*40.34
COADchr352617354Missense_MutationnovelR576C0.13
COADchr352576590SilentNAE1214E0.11
COADchr352589171Frame_Shift_DelNAN955Tfs*590.28
COADchr352678586SilentNAC50C0.08
COADchr352609374Missense_MutationNAR836W0.27
COADchr352617380Missense_MutationNAD567V0.33
COADchr352554771Frame_Shift_InsNAH1521Pfs*950.12
COADchr352628985Missense_MutationNAD451G0.13
COADchr352617390Nonsense_MutationNAE564*0.36
COADchr352587442Missense_MutationnovelF1012V0.13
COADchr352603674Missense_MutationnovelR876C0.17
COADchr352617318Nonsense_MutationnovelE588*0.14
COADchr352576541Missense_MutationNAG1231R0.38
COADchr352564094Missense_MutationNAF1277L0.1
COADchr352589171Frame_Shift_DelNAN955Tfs*590.35
COADchr352609927Frame_Shift_DelNAK651Nfs*50.3
DLBCchr352678575Missense_MutationnovelY54C0.59
ESCAchr352644768Frame_Shift_Delrs771618422I279Yfs*40.25
ESCAchr352617322Missense_MutationnovelM586I0.49
ESCAchr352603672Frame_Shift_DelnovelD877Mfs*380.19
ESCAchr352603674In_Frame_DelnovelF872_R876delinsC0.17
ESCAchr352678564Nonsense_MutationNAR58*0.26
ESCAchr3525477523'Flanknovel0.15
ESCAchr3525477533'Flanknovel0.14
ESCAchr352628961Missense_MutationnovelA459V0.43
ESCAchr352617516Nonsense_MutationnovelR522*0.71
GBMchr352609873SilentnovelV669V0.15
GBMchr352586284Intronnovel0.19
GBMchr352609752Nonsense_MutationNAR710*0.06
GBMchr352603674Missense_MutationnovelR876S0.12
GBMchr352561824Missense_MutationNAR1411C0.16
HNSCchr352576689Splice_SitenovelX1178_splice0.33
HNSCchr352617497Missense_MutationNAN528I0.39
HNSCchr352609844Missense_Mutationrs763078803R679H0.12
HNSCchr352668569Missense_MutationnovelE105Q0.19
HNSCchr352617266Missense_MutationNAS605F0.46
HNSCchr352627270Splice_Regionnovel0.22
HNSCchr352603559Frame_Shift_InsnovelI914Rfs*60.13
HNSCchr352678534Missense_MutationnovelL68F0.24
HNSCchr352642045Splice_RegionnovelR332R0.07
HNSCchr352603642SilentnovelL886L0.23
HNSCchr352589213Nonsense_MutationNAS941*0.1
HNSCchr352641975Nonsense_MutationnovelE356*0.28
HNSCchr352642013Missense_MutationnovelS343L0.21
HNSCchr352609601Missense_Mutationrs199976998R760H0.13
KICHchr352609584Missense_MutationnovelD766Y0.04
KIRCchr352668553Frame_Shift_DelNAN110Ifs*30.45
KIRCchr352617333Frame_Shift_DelNAG582Rfs*180.35
KIRCchr352627361Nonsense_MutationNAK485*0.28
KIRCchr352658220Frame_Shift_DelnovelQ209Rfs*150.5
KIRCchr352662148Frame_Shift_DelnovelT172Qfs*20.26
KIRCchr352609344Nonsense_MutationNAE846*0.39
KIRCchr352609545Nonsense_MutationNAQ779*0.35
KIRCchr352609352Frame_Shift_DelNAR836Lfs*120.26
KIRCchr352586595Frame_Shift_DelNAI1073Lfs*860.27
KIRCchr352644790Splice_SiteNAX272_splice0.1
KIRCchr352609332Nonsense_MutationNAR850*0.14
KIRCchr352658282Nonsense_MutationNAQ188*0.39
KIRCchr352629036Splice_SiteNAX434_splice0.11
KIRCchr352579107Frame_Shift_DelNAG1161Afs*570.31
KIRCchr352678598Splice_SitenovelX47_splice0.52
KIRCchr352644718Frame_Shift_DelnovelM292Ifs*50.14
KIRCchr352678595Splice_SitenovelX47_splice0.41
KIRCchr352609752Nonsense_MutationNAR710*0.27
KIRCchr352609517Nonsense_MutationNAS788*0.21
KIRCchr352563332Frame_Shift_DelnovelQ1346Rfs*380.15
KIRCchr352617277Missense_MutationNAN601K0.25
KIRCchr352615422Missense_MutationNAL618H0.57
KIRCchr352617320Missense_MutationNAI587T0.52
KIRCchr352586346IntronNA0.58
KIRCchr352643249Frame_Shift_DelNAR332Vfs*300.62
KIRCchr352651740Splice_SitenovelX238_splice0.3
KIRCchr352561771Nonsense_MutationNAY1428*0.22
KIRCchr352576643Frame_Shift_DelnovelI1197Ffs*210.4
KIRCchr352548200Nonsense_MutationnovelE1645*0.06
KIRCchr352579183Frame_Shift_DelnovelP1135Lfs*240.12
KIRCchr352644748Frame_Shift_DelnovelK283Rfs*30.16
KIRCchr352662132Splice_SiteNAX176_splice0.29
KIRCchr352587448Nonsense_MutationNAR1010*0.19
KIRCchr352603695Nonsense_MutationNAQ869*0.47
KIRCchr352662236Frame_Shift_InsnovelD142Gfs*90.33
KIRCchr352609725Nonsense_MutationNAQ719*0.61
KIRCchr352587503Frame_Shift_DelNAK991Nfs*230.4
KIRCchr352563477Nonsense_MutationNAQ1298*0.37
KIRCchr352561847Frame_Shift_DelNAD1403Lfs*180.2
KIRCchr352576627Missense_MutationNAT1202K0.36
KIRCchr352628896Nonsense_MutationNAQ481*0.64
KIRCchr352609882Nonsense_MutationNAY666*0.36
KIRCchr352603695Frame_Shift_InsnovelQ869Sfs*60.26
KIRCchr352679587Missense_MutationNAP42L0.27
KIRCchr352548124Missense_MutationNAR1670P0.15
KIRCchr352579193Nonsense_MutationNAE1132*0.34
KIRCchr352609752Nonsense_MutationNAR710*0.41
KIRCchr352668501Frame_Shift_DelnovelN122Kfs*470.2
KIRCchr352609812Nonsense_MutationNAR690*0.48
KIRCchr352587502Frame_Shift_InsnovelW992Mfs*120.27
KIRCchr352586432Frame_Shift_DelnovelN1126Gfs*150.24
KIRCchr352586658Nonsense_MutationNAR1052*0.1
KIRCchr352576592Frame_Shift_InsNAE1214Rfs*60.35
KIRCchr352587430Nonsense_MutationNAE1016*0.2
KIRCchr352564047Splice_Regionnovel0.16
KIRCchr352550499Frame_Shift_DelnovelS1607Qfs*50.34
KIRCchr352615424Frame_Shift_DelnovelL617Ffs*250.47
KIRCchr352617341Missense_MutationNAY580C0.36
KIRCchr352587417Frame_Shift_DelNAS1020*0.51
KIRCchr352662183Frame_Shift_DelnovelE160Kfs*140.68
KIRCchr352678564Nonsense_MutationNAR58*0.42
KIRCchr352603539Nonsense_MutationNAR921*0.24
KIRCchr352609727Missense_MutationNAY718C0.44
KIRCchr352634639Nonsense_MutationNAQ422*0.23
KIRCchr352586501Frame_Shift_InsnovelA1104Gfs*30.37
KIRCchr352648443Splice_SiteNAX239_splice0.33
KIRCchr352627309Nonsense_MutationNAS502*0.84
KIRCchr352644767Frame_Shift_InsnovelI279Nfs*80.35
KIRCchr352609892Frame_Shift_DelnovelN663Mfs*70.47
KIRCchr352615357Nonsense_MutationNAK640*0.24
KIRCchr352642047Splice_SitenovelX332_splice0.48
KIRCchr352658219Nonsense_MutationNAQ209*0.52
KIRCchr352615361Frame_Shift_DelNAK638Nfs*40.35
KIRCchr352564142Nonsense_MutationNAY1261*0.47
KIRCchr352668522Frame_Shift_DelnovelF120*0.19
KIRCchr352564064Missense_MutationNAE1287D0.58
KIRCchr352679583Frame_Shift_InsnovelV44Cfs*90.57
KIRCchr352609385Frame_Shift_DelNAN832Ifs*230.36
KIRCchr352628895Frame_Shift_DelNAQ481Rfs*190.46
KIRCchr352589094Nonsense_MutationNAE981*0.39
KIRCchr352658198Splice_SitenovelX215_splice0.29
KIRCchr352603676In_Frame_DelNAK874_I875delinsN0.27
KIRCchr352563324Frame_Shift_DelNAL1349Wfs*350.38
KIRCchr352617360Missense_MutationnovelN574Y0.52
KIRCchr352662261Frame_Shift_InsnovelY134Ifs*20.34
KIRCchr352561806Missense_MutationNAW1417G0.28
KIRCchr352561813Frame_Shift_DelNAT1415Qfs*660.27
KIRCchr352550749Frame_Shift_InsnovelQ1560Nfs*370.46
KIRCchr352658263Frame_Shift_DelNAV194Cfs*110.23
KIRCchr352617531Frame_Shift_DelnovelN517Hfs*150.6
KIRCchr352587496Frame_Shift_DelNAL993Mfs*200.61
KIRCchr352668596Nonsense_MutationNAK96*0.38
KIRCchr352678589Frame_Shift_DelnovelC50Afs*450.7
KIRCchr352634650Frame_Shift_DelnovelG401Vfs*200.17
KIRCchr352576568Frame_Shift_DelnovelE1222Kfs*50.46
KIRCchr352554802Frame_Shift_DelnovelQ1511Sfs*280.49
KIRCchr352554823Frame_Shift_DelNAV1505Lfs*340.32
KIRCchr352554732Frame_Shift_DelNAP1534Hfs*50.44
KIRCchr352644761Frame_Shift_DelNAY281Lfs*20.19
KIRCchr352564222Frame_Shift_DelNAV1235Cfs*340.23
KIRCchr352563363Frame_Shift_DelnovelV1336Sfs*480.44
KIRCchr352603643Missense_MutationnovelL886R0.18
KIRCchr352643269Frame_Shift_DelnovelN325Ifs*370.22
KIRCchr352603672Frame_Shift_DelnovelY862*0.5
KIRCchr352678585In_Frame_InsnovelC50_H51insKHFNT0.07
KIRCchr352678587Missense_MutationnovelC50S0.02
KIRCchr352679592Frame_Shift_DelNAS39Ffs*40.35
KIRCchr352648430Nonsense_MutationNAK243*0.37
KIRCchr352617323Missense_MutationNAM586T0.55
KIRCchr352554861Frame_Shift_DelNAP1491Rfs*480.62
KIRCchr352589105Frame_Shift_DelNAI977Rfs*40.47
KIRCchr352668533Frame_Shift_DelnovelD115Sfs*570.28
KIRCchr352648430Splice_SitenovelX239_splice0.38
KIRCchr352550818Splice_SiteNAX1537_splice0.28
KIRCchr352609638Frame_Shift_DelNAD748Mfs*270.38
KIRCchr352634654Frame_Shift_InsNAY417Ifs*30.4
KIRCchr352617283Frame_Shift_DelNAY600Ifs*420.42
KIRCchr352563353Frame_Shift_DelnovelP1339Lfs*450.24
KIRCchr352678553Frame_Shift_DelnovelD59Mfs*330.19
KIRCchr352563490Frame_Shift_DelnovelK1293Nfs*200.2
KIRCchr352589101SilentNAV978V0.31
KIRCchr352617367Frame_Shift_DelnovelI571Mfs*160.4
KIRCchr352617323Missense_MutationNAM586K0.36
KIRCchr352615435Missense_MutationNAL614V0.53
KIRCchr352548074Frame_Shift_DelnovelE1687Kfs*?0.49
KIRCchr352662183Nonsense_MutationNAE160*0.6
KIRCchr352589246Frame_Shift_DelNAK930Rfs*840.45
KIRCchr352589251SilentNAA928A0.44
KIRCchr352586669Missense_MutationNAP1048R0.41
KIRCchr352662153Nonsense_MutationNAQ170*0.31
KIRCchr352609782Frame_Shift_DelnovelY697*0.43
KIRCchr352609638Frame_Shift_DelNAD748Mfs*270.35
KIRCchr352609754Missense_MutationNAI709T0.53
KIRCchr352550536Frame_Shift_DelnovelF1594Lfs*20.68
KIRCchr352576679Nonsense_MutationNAR1185*0.18
KIRCchr352644729Frame_Shift_DelnovelE291Dfs*30.31
KIRCchr352628994Frame_Shift_DelnovelL448Wfs*50.32
KIRCchr352587363Frame_Shift_DelnovelM1038Sfs*1210.03
KIRCchr352658317Splice_SiteNAX177_splice0.27
KIRCchr352550627Frame_Shift_DelnovelL1564Wfs*320.68
KIRCchr352576569Frame_Shift_DelnovelE1222Kfs*50.56
KIRCchr352629019Nonsense_MutationNAQ440*0.29
KIRCchr352603573Frame_Shift_DelnovelK909Nfs*60.29
KIRCchr352617403Nonsense_MutationNAY559*0.33
KIRCchr352634801Nonsense_MutationNAE368*0.33
KIRCchr352564226Missense_MutationNAC1233W0.38
KIRCchr352576585Frame_Shift_InsnovelF1216Yfs*30.2
KIRCchr352634678Frame_Shift_DelnovelY409Tfs*290.46
KIRCchr352576699Splice_SiteNAX1178_splice0.41
KIRCchr352617366Frame_Shift_InsnovelE572*0.4
KIRCchr352628968Nonsense_MutationNAE457*0.41
KIRCchr352609332Nonsense_MutationNAR850*0.09
KIRPchr352564049Splice_SiteNAX1292_splice0.3
KIRPchr352609752Nonsense_MutationNAR710*0.62
KIRPchr352627322Frame_Shift_DelnovelS498Afs*20.45
KIRPchr352617539Splice_SiteNAX514_splice0.68
KIRPchr352644767Frame_Shift_InsnovelI279Nfs*80.83
KIRPchr352554775Missense_MutationNAP1520T0.49
KIRPchr352643251Missense_Mutationrs747444363Y331C0.34
KIRPchr352615414Nonsense_MutationNAK621*0.56
KIRPchr352550593Nonsense_MutationNAY1575*0.73
KIRPchr352662256Frame_Shift_DelnovelA136Pfs*380.65
KIRPchr352603631Missense_MutationNAA890E0.87
KIRPchr352579168Frame_Shift_DelNAN1140Mfs*190.75
KIRPchr352563421Frame_Shift_DelnovelF1316Lfs*40.81
LAMLchr352648408Missense_MutationnovelK250R0.1
LGGchr352561928Frame_Shift_DelnovelG1376Afs*80.46
LGGchr352563289SilentNAP1360P0.06
LGGchr352576650Frame_Shift_DelnovelI1195Sfs*230.49
LGGchr352564147Missense_MutationnovelR1260C0.37
LGGchr352603539Nonsense_MutationNAR921*0.46
LGGchr352609900Missense_MutationnovelQ660H0.28
LGGchr352634743Frame_Shift_InsnovelY387Lfs*50.53
LGGchr352644765Missense_MutationnovelF280V0.46
LGGchr352609516SilentNAS788S0.08
LGGchr352564201Frame_Shift_DelnovelL1242Sfs*270.06
LGGchr352617414Missense_MutationNAP556S0.37
LGGchr352587356SilentNAV1040V0.43
LIHCchr352564066Missense_MutationNAE1287K0.7
LIHCchr352561926Missense_MutationnovelS1377A0.38
LIHCchr352628923Nonsense_MutationNAR472*0.06
LIHCchr352550490Missense_MutationNAY1610H0.78
LIHCchr352564185Missense_MutationNAT1247I0.43
LIHCchr352634654Frame_Shift_InsNAY417Ifs*30.79
LIHCchr352628923Nonsense_MutationNAR472*0.59
LUADchr3525480573'UTRnovel0.18
LUADchr352609664Missense_MutationNAN739S0.27
LUADchr352615407Missense_MutationNAK623R0.25
LUADchr352550582Missense_MutationnovelH1579L0.06
LUADchr352550589Missense_MutationNAG1577C0.23
LUADchr352589213Nonsense_MutationNAS941*0.4
LUADchr352589213Nonsense_MutationNAS941*0.41
LUADchr352550746Splice_SiteNAX1560_splice0.43
LUADchr352589094Missense_MutationnovelE981Q0.06
LUADchr352609255Splice_SitenovelX841_splice0.28
LUADchr352679703SilentNAS3S0.14
LUADchr352634599Splice_Regionnovel0.68
LUADchr352617515Missense_MutationNAR522L0.33
LUADchr352563374Frame_Shift_InsnovelE1332Gfs*30.12
LUADchr352609688Missense_MutationNAM731K0.06
LUADchr352586302Intronnovel0.07
LUSCchr352589167Missense_MutationnovelS956R0.33
LUSCchr352563287Frame_Shift_DelnovelP1361Hfs*230.3
LUSCchr352609761Nonsense_MutationnovelE707*0.3
LUSCchr352548224Missense_Mutationrs201397730D1637N0.05
LUSCchr352548225Silentrs758916169R1636R0.07
LUSCchr352609733Missense_MutationnovelN716T0.05
LUSCchr352586295Intronnovel0.16
LUSCchr352589069Splice_SiteNAX989_splice0.37
LUSCchr352628970Missense_MutationNAF456S0.3
LUSCchr352658292Missense_MutationNAE184D0.1
LUSCchr352587511Splice_SiteNAX989_splice0.55
LUSCchr352651780Missense_MutationNAE226Q0.51
LUSCchr352609413Missense_MutationNAD823H0.33
LUSCchr352587502Frame_Shift_InsnovelW992Mfs*120.47
LUSCchr352576547Missense_MutationnovelI1229V0.28
LUSCchr352648424Missense_MutationNAI245F0.21
LUSCchr352617298SilentNAF594F0.14
LUSCchr352648384Frame_Shift_DelNAN258Mfs*250.67
MESOchr352587463In_Frame_DelnovelY999_T1004del0.26
MESOchr352634639Nonsense_MutationNAQ422*0.5
MESOchr352550633Frame_Shift_DelnovelG1562Efs*340.43
OVchr352589146Nonsense_MutationNAY963*0.19
OVchr352651811Splice_SitenovelX216_splice0.08
OVchr352579114Frame_Shift_InsnovelL1158Qfs*120.03
OVchr352658196Splice_SitenovelX207_splice0.1
PAADchr352603519Splice_SitenovelX927_splice0.05
PAADchr352586526Missense_MutationnovelR1096C0.21
PAADchr352603674Missense_MutationnovelR876C0.15
PAADchr352564105Missense_MutationnovelL1274V0.22
PAADchr352617461Missense_MutationNAR540T0.03
PAADchr352615457Splice_SiteNAX607_splice0.08
PAADchr352576699Splice_SitenovelX1178_splice0.03
PRADchr352564055SilentnovelY1290Y0.45
PRADchr352648401SilentnovelI252I0.07
PRADchr352662207Missense_MutationnovelV152F0.05
PRADchr352586348Intronnovel0.39
PRADchr352634623Missense_MutationnovelP427L0.4
PRADchr352679663Missense_Mutationrs764436452G17R0.2
READchr352609383Missense_Mutationrs146395938R833C0.32
READchr352548161Missense_MutationnovelA1658S0.15
READchr352563417Missense_Mutationrs199643728E1318K0.64
READchr3525480463'UTRnovel0.37
READchr352668585SilentnovelQ99Q0.42
READchr352576679Nonsense_MutationNAR1185*0.15
READchr352603674Missense_MutationnovelR876C0.31
READchr352628956Missense_Mutationrs779427834R461C0.28
READchr352634661Missense_MutationNAK414N0.42
SARCchr352609653Missense_MutationnovelS743T0.44
SARCchr352561893SilentNAL1388L0.27
SARCchr352589090Missense_MutationNAR982K0.3
SARCchr3525476953'Flanknovel0.83
SARCchr352662183Missense_Mutationrs774655494E160K0.47
SARCchr352644768Frame_Shift_Delrs771618422I279Yfs*40.21
SKCMchr352576559Missense_MutationnovelP1225S0.2
SKCMchr352609731Nonsense_MutationNAK717*0.31
SKCMchr352615457Splice_SiteNAX607_splice0.18
SKCMchr352658309Missense_MutationnovelP179S0.39
SKCMchr352576681Missense_MutationnovelV1184A0.37
SKCMchr352634668Missense_MutationnovelP412L0.16
SKCMchr352603674Missense_MutationnovelR876C0.29
SKCMchr352576679Nonsense_MutationNAR1185*0.93
SKCMchr352564117Missense_MutationNAK1270Q0.46
SKCMchr352576684Nonsense_MutationNAW1183*0.42
SKCMchr352586554Silentrs773918156V1086V0.28
SKCMchr352589149SilentNAD962D0.05
SKCMchr352609775Missense_MutationNAK702T0.1
SKCMchr352561877Frame_Shift_DelnovelS1391Efs*50.7
SKCMchr352563472SilentNAK1299K0.45
SKCMchr352634769SilentNAS378S0.32
SKCMchr352550427SilentNAL1631L0.39
SKCMchr352609858SilentnovelD674D0.12
SKCMchr352617497Missense_Mutationrs201580633N528S0.13
SKCMchr352586627Missense_Mutationrs757754297R1062Q0.44
SKCMchr352579133Missense_MutationnovelH1152Y0.26
SKCMchr352609752Nonsense_MutationNAR710*0.73
SKCMchr352643306Missense_MutationNAP313S0.6
SKCMchr352576592Frame_Shift_InsNAE1214Rfs*60.21
SKCMchr352641959Nonsense_MutationNAL361*0.2
SKCMchr352548119Missense_MutationNAL1672M0.84
SKCMchr352668627Nonsense_MutationNAY85*0.77
SKCMchr352662164Missense_MutationnovelG166E0.49
SKCMchr352586623Nonsense_MutationNAY1063*0.4
SKCMchr352609469Nonsense_MutationNAL804*0.36
SKCMchr352586526Missense_MutationnovelR1096C0.42
STADchr352587477Missense_Mutationrs750583919R1000Q0.29
STADchr352586353Intronnovel0.12
STADchr352648383Frame_Shift_InsnovelN258Kfs*60.2
STADchr352554782Frame_Shift_DelNAP1518Lfs*210.18
STADchr352609926Frame_Shift_InsnovelS652Ifs*130.24
STADchr352644768Frame_Shift_Delrs771618422I279Yfs*40.56
STADchr352609709Missense_MutationnovelM724T0.27
STADchr352576538Splice_Regionnovel0.18
STADchr352576607Frame_Shift_DelnovelM1209Cfs*90.17
STADchr352576679Nonsense_MutationNAR1185*0.43
STADchr352617297Missense_Mutationrs777012889R595W0.3
STADchr352561920Missense_MutationNAR1379W0.07
STADchr352617422Frame_Shift_DelNAK553Rfs*160.31
STADchr352648373Frame_Shift_DelnovelY262*0.29
STADchr352658269Missense_MutationnovelA192V0.43
STADchr352564056Missense_MutationNAY1290F0.08
STADchr352609724Missense_MutationNAQ719R0.11
STADchr352586395Intronnovel0.44
STADchr352648383Frame_Shift_InsnovelN258Kfs*60.42
STADchr352634670SilentnovelL411L0.1
STADchr352550805Frame_Shift_DelnovelM1539Kfs*70.09
STADchr352589103Missense_Mutationrs375687372V978I0.06
STADchr352586661Missense_MutationNAF1051V0.26
STADchr352586651Missense_MutationNAE1054V0.11
STADchr352644768Frame_Shift_Delrs771618422I279Yfs*40.44
STADchr352609755Frame_Shift_DelNAI709Ffs*50.31
STADchr352589145Missense_Mutationrs756858926V964I0.23
STADchr352617353Missense_Mutationrs554214396R576H0.32
STADchr352579201Splice_SiteNAX1130_splice0.15
STADchr352678504Nonsense_MutationNAR78*0.32
STADchr352678554Missense_MutationNAK61T0.3
STADchr352617422Frame_Shift_DelNAK553Rfs*160.07
STADchr352563324Frame_Shift_DelNAL1349Wfs*350.2
STADchr352586524Silentrs751247753R1096R0.31
STADchr352561927SilentNAG1376G0.21
STADchr352603731Missense_MutationNAT857A0.17
STADchr352609774Frame_Shift_InsnovelP703Afs*200.19
STADchr352609926Frame_Shift_InsnovelS652Ifs*130.23
STADchr352576679Nonsense_MutationNAR1185*0.25
STADchr352648384Frame_Shift_DelNAN258Mfs*250.1
STADchr352603684Frame_Shift_DelnovelF872Lfs*430.67
TGCTchr352634654Frame_Shift_InsNAY417Ifs*30.35
THYMchr352586435Missense_MutationnovelN1126S0.08
THYMchr352662250SilentnovelA137A0.11
THYMchr352603573Frame_Shift_DelnovelK909Nfs*60.47
UCECchr352586239Intronnovel0.36
UCECchr352627271Splice_SitenovelX514_splice0.28
UCECchr352561898Missense_MutationnovelY1386C0.18
UCECchr352563351Missense_MutationnovelP1340S0.13
UCECchr352589185SilentnovelD950D0.21
UCECchr3525463093'Flanknovel0.31
UCECchr3525470733'Flanknovel0.32
UCECchr352579063Missense_MutationnovelR1175H0.55
UCECchr352648373Missense_MutationnovelY262H0.39
UCECchr352617380Missense_MutationnovelD567G0.16
UCECchr352678563Missense_MutationnovelR58Q0.32
UCECchr3525466923'Flanknovel0.53
UCECchr3525462253'Flanknovel0.17
UCECchr352576544Missense_MutationnovelL1230I0.13
UCECchr352644779Nonsense_MutationNAS275*0.2
UCECchr352576679Nonsense_MutationNAR1185*0.28
UCECchr352648383Frame_Shift_InsnovelN258Kfs*60.38
UCECchr352603539Nonsense_MutationNAR921*0.4
UCECchr3525479203'Flankrs1481810250.29
UCECchr352609314Missense_MutationnovelR856W0.1
UCECchr3525479203'Flankrs1481810250.13
UCECchr352668646Splice_SitenovelX79_splice0.24
UCECchr3525476953'Flanknovel0.63
UCECchr352550589Missense_Mutationrs200150658G1577S0.35
UCECchr352561920Missense_MutationNAR1379W0.06
UCECchr3525459613'Flanknovel0.3
UCECchr3525473933'Flanknovel0.23
UCECchr3525478123'Flanknovel0.38
UCECchr352609752Nonsense_MutationNAR710*0.48
UCECchr3525461883'Flanknovel0.52
UCECchr3525474973'Flanknovel0.45
UCECchr3525460853'Flanknovel0.25
UCECchr352644768Frame_Shift_Delrs771618422I279Yfs*40.53
UCECchr352658257Nonsense_MutationnovelA196Gfs*50.13
UCECchr3525462523'Flanknovel0.4
UCECchr352564133Silentrs747158451S1264S0.31
UCECchr352589146SilentnovelY963Y0.43
UCECchr352617516Nonsense_MutationnovelR522*0.47
UCECchr352564136Missense_MutationnovelE1263D0.12
UCECchr352587376Nonsense_MutationNAK1034*0.34
UCECchr352576679Nonsense_MutationNAR1185*0.2
UCECchr352550797Missense_MutationnovelA1544T0.45
UCECchr352579104Silentrs779151140G1161G0.4
UCECchr352609472Missense_MutationnovelS803Y0.4
UCECchr352651776Missense_MutationnovelP227H0.42
UCECchr352603730Missense_MutationnovelT857I0.27
UCECchr3525462613'Flanknovel0.38
UCECchr352576544Missense_MutationnovelL1230I0.37
UCECchr352579066Missense_MutationnovelP1174L0.52
UCECchr352634654Missense_MutationnovelY417H0.49
UCECchr352662244SilentnovelK139K0.53
UCECchr352679613SilentnovelR33R0.44
UCECchr352609752Nonsense_MutationNAR710*0.09
UCECchr352609937Missense_MutationnovelS648Y0.4
UCECchr352609419Missense_MutationNAT821A0.43
UCECchr352679653Missense_MutationNAD20G0.32
UCECchr352634654Frame_Shift_InsNAY417Ifs*30.29
UCECchr352548091Missense_Mutationrs371624499R1681H0.33
UCECchr352668587Nonsense_MutationnovelQ99*0.38
UCECchr352617454SilentnovelL542L0.13
UCECchr3525463823'Flanknovel0.47
UCECchr352576679Nonsense_MutationNAR1185*0.51
UCECchr352628923Nonsense_MutationNAR472*0.49
UCECchr352609510Missense_MutationnovelM790I0.35
UCECchr352586526Missense_MutationnovelR1096C0.49
UCECchr352603675Missense_MutationnovelI875M0.48
UCECchr352627315Missense_MutationnovelI500S0.47
UCECchr352648391Missense_Mutationrs776146971A256T0.4
UCECchr3525464783'Flanknovel0.15
UCECchr3525468223'Flanknovel0.41
UCECchr352589233SilentnovelS934S0.35
UCECchr352609752Nonsense_MutationNAR710*0.39
UCECchr3525480463'UTRnovel0.35
UCECchr352603687Missense_MutationNAF871L0.28
UCECchr3525464533'Flanknovel0.11
UCECchr3525480463'UTRnovel0.26
UCECchr352564095Missense_MutationnovelF1277C0.17
UCECchr352609752Nonsense_MutationNAR710*0.1
UCECchr352644764Missense_MutationnovelF280S0.12
UCECchr352658235SilentnovelL203L0.4
UCECchr3525465263'Flanknovel0.27
UCECchr3525480513'UTRrs7793381570.28
UCECchr352648368In_Frame_DelNAN263del0.17
UCECchr3525461343'Flanknovel0.36
UCECchr352548227Missense_MutationNAR1636C0.08
UCECchr352662184Silentrs762326260D159D0.31
UCECchr3525468843'Flanknovel0.33
UCECchr3525463813'Flankrs5487154560.38
UCECchr352589103Missense_Mutationrs375687372V978I0.3
UCECchr352609510Missense_MutationnovelM790I0.31
UCECchr352678512Missense_MutationNAA75V0.08
UCECchr352634810Missense_Mutationrs147499494R365C0.4
UCECchr352634624Missense_MutationNAP427S0.12
UCECchr352563422Missense_MutationNAF1316C0.29
UCECchr352586606Missense_MutationnovelS1069Y0.31
UCECchr352617489Missense_MutationnovelL531I0.27
UCECchr352564146Missense_MutationnovelR1260H0.24
UCECchr352634698Missense_MutationnovelQ402R0.1
UCECchr352679692Missense_MutationnovelR7I0.18
UCECchr352586549Missense_MutationNAR1088Q0.38
UCECchr3525462093'Flanknovel0.34
UCECchr352609356Missense_MutationnovelE842Q0.16
UCECchr352561955Missense_Mutationrs371730711S1367F0.42
UCECchr352603728Missense_MutationnovelD858N0.6
UCECchr352644768Frame_Shift_Delrs771618422I279Yfs*40.56
UCECchr3525466923'Flanknovel0.64
UCECchr352589146SilentnovelY963Y0.6
UCECchr352609844Missense_Mutationrs763078803R679H0.43
UCECchr352617354Missense_MutationnovelR576C0.41
UCECchr352558375Nonsense_MutationnovelR1443*0.45
UCECchr352609752Nonsense_MutationNAR710*0.42
UCSchr352576679Nonsense_MutationNAR1185*0.28
UCSchr352609752Nonsense_MutationNAR710*0.25
UCSchr352662183Missense_Mutationrs774655494E160K0.14

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.77780.016387
GBMDEL0.08490.056565
LGGDEL0.07990.00089193
LUADDEL0.32950.0021265
PAADDEL0.19020.030662
SARCDEL0.21790.0034746
SKCMDEL0.16350.13887
STADDEL0.27891.0362e-08
TGCTAMP0.14670.23596
THYMDEL0.08940.037527
UCSDEL0.54.5515e-05

Survival Analysis
CancerP-value Q-value
THYM0.0077

Kaplan-Meier Survival Analysis

KIRC0.00099

Kaplan-Meier Survival Analysis

SARC0.0044

Kaplan-Meier Survival Analysis

MESO0.0089

Kaplan-Meier Survival Analysis

ACC0.034

Kaplan-Meier Survival Analysis

HNSC0.015

Kaplan-Meier Survival Analysis

SKCM0.0038

Kaplan-Meier Survival Analysis

READ0.0047

Kaplan-Meier Survival Analysis

KICH0.013

Kaplan-Meier Survival Analysis

LIHC0.012

Kaplan-Meier Survival Analysis

THCA0.017

Kaplan-Meier Survival Analysis

UVM0.042

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000163939 (Gene tree)
Gene ID
55193
Gene Symbol
PBRM1
Alias
BAF180|PB1
Full Name
polybromo 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
140,566 bases
Position
chr3:52,545,352-52,685,917
Accession
30064
RBP type
non-canonical RBP
Summary
This locus encodes a subunit of ATP-dependent chromatin-remodeling complexes. The encoded protein has been identified as in integral component of complexes necessary for ligand-dependent transcriptional activation by nuclear hormone receptors. Mutations at this locus have been associated with primary clear cell renal cell carcinoma. [provided by RefSeq, Feb 2012]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000431678PBRM1-213809-ENSP00000409939230 (aa)-C9JPI5
ENST00000480064PBRM1-220919--- (aa)--
ENST00000450271PBRM1-217517-ENSP0000041685187 (aa)-C9JCJ2
ENST00000446103PBRM1-2153256-ENSP000003976621085 (aa)-H0Y5B5
ENST00000409057PBRM1-2054980XM_017006753ENSP000003865931634 (aa)XP_016862242Q86U86
ENST00000409114PBRM1-2065015XM_017006752ENSP000003866431652 (aa)XP_016862241Q86U86
ENST00000356770PBRM1-2037523-ENSP000003492131602 (aa)-Q86U86
ENST00000410007PBRM1-2084905XM_017006759ENSP000003865291609 (aa)XP_016862248Q86U86
ENST00000296302PBRM1-2015145XM_005265279ENSP000002963021689 (aa)XP_005265336Q86U86
ENST00000420148PBRM1-210783-ENSP00000389390152 (aa)-C9JQF1
ENST00000409767PBRM1-2074849-ENSP000003866011597 (aa)-Q86U86
ENST00000337303PBRM1-2024825XM_017006764ENSP000003383021582 (aa)XP_016862253Q86U86
ENST00000412587PBRM1-2094766-ENSP00000404579856 (aa)-Q86U86
ENST00000449505PBRM1-216517-ENSP00000412401118 (aa)-C9J053
ENST00000462207PBRM1-2191921--- (aa)--
ENST00000458294PBRM1-218476-ENSP0000041189543 (aa)-C9J409
ENST00000424867PBRM1-212457-ENSP0000039739926 (aa)-C9J9L6
ENST00000423351PBRM1-2114385-ENSP000003877751460 (aa)-E7EVG2
ENST00000394830PBRM1-2045071-ENSP000003783071582 (aa)-Q86U86
ENST00000439181PBRM1-214547-ENSP0000040463543 (aa)-C9J409
Gene Model
Click here to download ENSG00000163939's gene model file
Pathways
Pathway IDPathway NameSource
hsa05225Hepatocellular carcinomaKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000163939Respiratory Function Tests6.334248366624E-517903307
ENSG00000163939gamma-Globulins5.3740000E-005-
ENSG00000163939gamma-Globulins3.3360000E-005-
ENSG00000163939gamma-Globulins3.2180000E-005-
ENSG00000163939gamma-Globulins2.7580000E-005-
ENSG00000163939Adiponectin1E-1322479202
ENSG00000163939Body Mass Index7E-1125673412
ENSG00000163939Waist-Hip Ratio7E-1125673412
ENSG00000163939Osteoarthritis5E-922763110
ENSG00000163939Body Mass Index1E-825673412
ENSG00000163939Waist-Hip Ratio1E-825673412
ENSG00000163939Body Mass Index4E-1125673412
ENSG00000163939Waist-Hip Ratio4E-1125673412
ENSG00000163939Body Mass Index5E-1025673412
ENSG00000163939Waist-Hip Ratio5E-1025673412
ENSG00000163939Body Mass Index3E-1125673412
ENSG00000163939Waist-Hip Ratio3E-1125673412
ENSG00000163939Adiponectin2E-1322479202
ENSG00000163939Bipolar Disorder2E-623092984
ENSG00000163939Body Mass Index2E-925673412
ENSG00000163939Waist-Hip Ratio2E-925673412
ENSG00000163939Mood Disorders2E-920081856
ENSG00000163939Body Mass Index7E-1125673412
ENSG00000163939Waist-Hip Ratio7E-1125673412
ENSG00000163939Body Mass Index4E-925673412
ENSG00000163939Waist-Hip Ratio4E-925673412
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000163939rs12493107352672708TBlood protein levels29875488[0.12-0.24] unit decrease0.18EFO_0007937
ENSG00000163939rs34218707352666891CBlood protein levels29875488[0.35-0.47] unit increase0.41EFO_0007937
ENSG00000163939rs10865974352684264?Bipolar disorder with mood-incongruent psychosis23092984[NR]1.19EFO_0000289
ENSG00000163939rs2251219352550771?Major mood disorders20081856[1.09-1.18]1.14EFO_0004247
ENSG00000163939rs2577831352594040CSchizophrenia28991256[1.05-1.09]1.0683761EFO_0000692
ENSG00000163939rs2878628352550699AIntelligence (MTAG)29326435[0.011-0.023] unit decrease0.016829833EFO_0004337
ENSG00000163939rs9879090352614249TFeeling nervous29500382z score increase6.03EFO_0009597
ENSG00000163939rs60311166352637054GCTACK levels27989323[0.41-1.04] SD units increase0.7233EFO_0008082
ENSG00000163939rs9864989352650349?Systolic blood pressure28498854[1.62-3.92] unit increase2.77EFO_0006335
ENSG00000163939rs9864989352650349?Diastolic blood pressure28498854[1.64-1.64] unit increase1.6431EFO_0006336
ENSG00000163939rs9864989352650349?Hypertension28498854[0.20-0.50] unit increase0.3463EFO_0000537
ENSG00000163939rs2590838352588070GAdiponectin levels22479202[0.022-0.038] unit decrease0.03EFO_0004502
ENSG00000163939rs13083798352615732AWaist circumference adjusted for body mass index28448500[0.023-0.042] cm increase0.0325EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732AWaist circumference adjusted for body mass index28448500[0.017-0.031] cm increase0.0242EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732AWaist circumference adjusted for body mass index28448500[0.015-0.028] cm increase0.0216EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732AWaist circumference adjusted for BMI in active individuals28448500[0.023-0.044] cm increase0.0335EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732AWaist circumference adjusted for BMI in active individuals28448500[0.017-0.033] cm increase0.0252EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732AWaist circumference adjusted for BMI in active individuals28448500[0.015-0.031] cm increase0.0229EFO_0007789|EFO_0008002
ENSG00000163939rs2590838352588070GWaist-to-hip ratio adjusted for body mass index28448500[0.018-0.038] unit increase0.0276EFO_0007788|EFO_0008002
ENSG00000163939rs2590838352588070GWaist-to-hip ratio adjusted for body mass index28448500[0.016-0.031] unit increase0.0235EFO_0007788|EFO_0008002
ENSG00000163939rs2590838352588070GWaist-to-hip ratio adjusted for BMI in active individuals28448500[0.015-0.038] unit increase0.0264EFO_0007788|EFO_0008002
ENSG00000163939rs2590838352588070GWaist-to-hip ratio adjusted for BMI in active individuals28448500[0.015-0.033] unit increase0.0242EFO_0007788|EFO_0008002
ENSG00000163939rs13083798352615732AWaist-to-hip ratio adjusted for body mass index25673412[0.019-0.037] unit increase0.0283EFO_0007788
ENSG00000163939rs13083798352615732AWaist-to-hip ratio adjusted for body mass index25673412[0.016-0.029] unit increase0.0227EFO_0007788
ENSG00000163939rs13083798352615732AWaist-to-hip ratio adjusted for body mass index25673412[0.018-0.036] unit increase0.0268EFO_0007788
ENSG00000163939rs13083798352615732AWaist-to-hip ratio adjusted for body mass index25673412[0.015-0.028] unit increase0.0218EFO_0007788
ENSG00000163939rs2276824352603470CWaist-to-hip ratio adjusted for body mass index25673412[0.019-0.037] unit increase0.028EFO_0007788
ENSG00000163939rs2276824352603470CWaist-to-hip ratio adjusted for body mass index25673412[0.017-0.031] unit increase0.0236EFO_0007788
ENSG00000163939rs2276824352603470CWaist-to-hip ratio adjusted for body mass index25673412[0.017-0.036] unit increase0.0265EFO_0007788
ENSG00000163939rs2276824352603470CWaist-to-hip ratio adjusted for body mass index25673412[0.016-0.029] unit increase0.0224EFO_0007788
ENSG00000163939rs2276824352603470CWaist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)28443625[0.012-0.027] unit increase0.0193EFO_0004318|EFO_0007788
ENSG00000163939rs2276824352603470CWaist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)28443625[0.012-0.031] unit increase0.0215EFO_0004318|EFO_0007788
ENSG00000163939rs13083798352615732AWaist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)28443625[0.013-0.027] unit increase0.0198EFO_0004318|EFO_0007788
ENSG00000163939rs13083798352615732AWaist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)28443625[0.012-0.029] unit increase0.0204EFO_0004318|EFO_0007788
ENSG00000163939rs13083798352615732?Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)28448500EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732?Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)28448500EFO_0007789|EFO_0008002
ENSG00000163939rs13083798352615732?Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)28448500EFO_0007789|EFO_0008002
ENSG00000163939rs2590838352588070?Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)28448500EFO_0007788|EFO_0008002
ENSG00000163939rs2590838352588070?Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)28448500EFO_0007788|EFO_0008002
ENSG00000163939rs9879090352614249TGeneral cognitive ability29844566z-score decrease7.075EFO_0004337
ENSG00000163939rs2590838352588070GBody mass index30108127[NR] unit decrease0.012EFO_0004340
ENSG00000163939rs13083798352615732AAutomobile speeding propensity30643258[0.0079-0.0167] unit decrease0.012325772EFO_0008579
ENSG00000163939rs10933352685800?Waist-hip ratio30595370EFO_0004343
ENSG00000163939rs2577831352594040?Red blood cell count30595370EFO_0004305
ENSG00000163939rs55946513352565776CInsomnia symptoms (never/rarely vs. sometimes/usually)30804566[1.01-1.06]1.04EFO_0007876
ENSG00000163939rs565817433352684168CBody fat distribution (leg fat ratio)30664634NR unit increase (replication)0.01066EFO_0004341
ENSG00000163939rs2577831352594040CSchizophrenia30285260[1.05-1.09]1.0695187EFO_0000692
ENSG00000163939rs2577831352594040ASchizophrenia30285260[1.05-1.09]1.0689EFO_0000692
ENSG00000163939rs565817433352684168CBody fat distribution (trunk fat ratio)30664634NR unit decrease (replication)0.02074EFO_0004341
ENSG00000163939rs565817433352684168CBody fat distribution (trunk fat ratio)30664634NR unit decrease (replication)0.01312EFO_0004341
ENSG00000163939rs565817433352684168CBody fat distribution (leg fat ratio)30664634NR unit increase (replication)0.01704EFO_0004341
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000163939's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000163939PBRM1100100.000ENSMUSG00000042323Pbrm1100100.000Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000228nuclear chromosome11078522.NASComponent
GO:0000278mitotic cell cycle11078522.TASProcess
GO:0003677DNA binding-IEAFunction
GO:0003682chromatin binding21873635.IBAFunction
GO:0003682chromatin binding11078522.NASFunction
GO:0005515protein binding11780067.12368262.15985610.20130577.22140357.27142060.IPIFunction