EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24452241RPL39L is an example of a recently evolved ribosomal protein paralog that shows highly specific tissue expression patterns and is upregulated in ESCs and HCC tumors.RNA Biol2014Wong QWdoi: 10.4161/rna.27427
24815453Effects of ribosomal protein l39-L on the drug resistance mechanisms of lung cancer A549 cells.Asian Pac J Cancer Prev2014Liu HS-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr31871210313'UTRnovel0.44
BRCAchr31871209883'UTRnovel0.75
BRCAchr31871211423'UTRnovel0.12
BRCAchr3187121150Missense_MutationNAL51V0.23
COADchr31871213035'UTRrs7654128870.22
COADchr3187121153Missense_MutationNAG50C0.44
COADchr3187121220SilentNAI27I0.28
ESCAchr31871211353'UTRrs3717114350.21
HNSCchr3187121278Missense_MutationnovelT8S0.32
HNSCchr3187121276Missense_MutationnovelI9F0.19Ribosomal_L39
HNSCchr3187121209Missense_Mutationrs769500230P31L0.07Ribosomal_L39
HNSCchr3187121210Missense_MutationnovelP31S0.07Ribosomal_L39
LUADchr3187121178SilentnovelR41R0.12
LUSCchr3187121190Nonsense_MutationnovelY37*0.19Ribosomal_L39
LUSCchr31871211053'UTRnovel0.22
OVchr3187121264Frame_Shift_DelnovelL13Wfs*170.6Ribosomal_L39
OVchr3187121300Translation_Start_Siters762053308M1?0.11
SARCchr31871211443'UTRnovel0.23
SKCMchr3187121240Missense_Mutationrs547833786R21C0.08Ribosomal_L39
SKCMchr31871211193'UTRnovel0.62
SKCMchr3187121231Missense_MutationNAP24S0.49Ribosomal_L39
SKCMchr31871211433'UTRnovel0.33
STADchr31871210853'UTRnovel0.15
STADchr3187121287Missense_MutationNAK5M0.05
STADchr31871213185'UTRnovel0.34
UCECchr3187121160SilentnovelT47T0.12
UCECchr3187121240Missense_Mutationrs547833786R21C0.32Ribosomal_L39
UCECchr31871211143'UTRnovel0.52
UCECchr3187121255Missense_MutationnovelK16E0.4Ribosomal_L39
UCECchr31871210853'UTRnovel0.49
UCECchr3187121203Missense_MutationNAS33N0.1Ribosomal_L39
UCECchr31871213025'UTRnovel0.6
UCECchr31871210043'UTRnovel0.47
UCECchr31871210593'UTRnovel0.3
UCECchr31871210213'UTRnovel0.63
UCECchr31871210043'UTRnovel0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.43380.0018563
KIRCAMP0.11932.0306e-05
KIRPAMP0.31940.15981
LUADDEL0.19190.010111
PAADAMP0.10330.16151
SARCDEL0.15950.0086757
TGCTAMP0.25337.0307e-05

Survival Analysis
CancerP-value Q-value
ACC0.0023

Kaplan-Meier Survival Analysis

PAAD0.0096

Kaplan-Meier Survival Analysis

LAML0.01

Kaplan-Meier Survival Analysis

UCEC0.0023

Kaplan-Meier Survival Analysis

GBM0.00011

Kaplan-Meier Survival Analysis

LIHC0.033

Kaplan-Meier Survival Analysis

DLBC0.01

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

THCA0.0053

Kaplan-Meier Survival Analysis

LUAD0.012

Kaplan-Meier Survival Analysis

UVM0.04

Kaplan-Meier Survival Analysis

OV0.00016

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000163923 (Gene tree)
Gene ID
116832
Gene Symbol
RPL39L
Alias
RPL39L1
Full Name
ribosomal protein L39 like
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
59,961 bases
Position
chr3:187,120,948-187,180,908
Accession
17094
RBP type
canonical RBP
Summary
This gene encodes a protein sharing high sequence similarity with ribosomal protein L39. Although the name of this gene has been referred to as 'ribosomal protein L39' in the public databases, its official name is 'ribosomal protein L39-like'. It is not currently known whether the encoded protein is a functional ribosomal protein or whether it has evolved a function that is independent of the ribosome. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000296277Ribosomal_L39PF00832.204.2e-2211
ENSP00000389356Ribosomal_L39PF00832.204.2e-2211
ENSP00000397240Ribosomal_L39PF00832.204.2e-2211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000296277RPL39L-201756-ENSP0000029627751 (aa)-Q96EH5
ENST00000455270RPL39L-203653-ENSP0000039724051 (aa)-Q96EH5
ENST00000433055RPL39L-202749-ENSP0000038935651 (aa)-Q96EH5
Gene Model
Click here to download ENSG00000163923's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000163923rs168616293187121427?Adolescent idiopathic scoliosis30019117EFO_0005423
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000163923's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000163923RPL39L10092.157ENSG00000198918RPL3910092.157
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000163923RPL39L10092.157ENSCJAG00000042864-10092.157Callithrix_jacchus
ENSG00000163923RPL39L10072.549ENSCJAG00000045312-10072.549Callithrix_jacchus
ENSG00000163923RPL39L10098.039ENSCSAG00000018929RPL39L10098.039Chlorocebus_sabaeus
ENSG00000163923RPL39L10098.039ENSCANG00000015756RPL39L10098.039Colobus_angolensis_palliatus
ENSG00000163923RPL39L10098.039ENSGGOG00000039881RPL39L10098.039Gorilla_gorilla
ENSG00000163923RPL39L10086.275ENSGGOG00000037933-10086.275Gorilla_gorilla
ENSG00000163923RPL39L10098.039ENSMFAG00000012432RPL39L10098.039Macaca_fascicularis
ENSG00000163923RPL39L10098.039ENSMMUG00000045578RPL39L10098.039Macaca_mulatta
ENSG00000163923RPL39L10098.039ENSMNEG00000002491RPL39L10098.039Macaca_nemestrina
ENSG00000163923RPL39L10098.039ENSNLEG00000032768RPL39L10098.039Nomascus_leucogenys
ENSG00000163923RPL39L10098.039ENSPPAG00000001747RPL39L10098.039Pan_paniscus
ENSG00000163923RPL39L10098.039ENSPTRG00000052452RPL39L10098.039Pan_troglodytes
ENSG00000163923RPL39L10096.078ENSPPYG00000014389RPL39L10096.078Pongo_abelii
ENSG00000163923RPL39L10098.039ENSRBIG00000029733RPL39L10098.039Rhinopithecus_bieti
ENSG00000163923RPL39L10098.039ENSRROG00000016550RPL39L10098.039Rhinopithecus_roxellana
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003735structural constituent of ribosome-IEAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0006412translation-IEAProcess
GO:0007283spermatogenesis12490704.IEPProcess
GO:0022625cytosolic large ribosomal subunit21873635.IBAComponent
GO:0022625cytosolic large ribosomal subunit12490704.NASComponent
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