EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
19553003In vivo growth inhibition of head and neck squamous cell carcinoma by the Interferon-inducible gene IFI16.Cancer Lett2010 Jan 1Mazibrada Jdoi: 10.1016/j.canlet.2009.05.035
22618232Preferential binding of IFI16 protein to cruciform structure and superhelical DNA.Biochem Biophys Res Commun2012 Jun 15Br??zda Vdoi: 10.1016/j.bbrc.2012.05.065
17339605IFI16 in human prostate cancer.Mol Cancer Res2007 MarAlimirah F-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1159051941Missense_MutationnovelE643V0.24
BLCAchr1159032530Missense_MutationnovelK390Q0.09
BLCAchr1159016601Missense_MutationnovelQ150H0.11
BLCAchr1159014924Missense_MutationnovelL82V0.08
BLCAchr1159020387Missense_MutationnovelR340T0.35
BLCAchr1159014933Missense_MutationnovelE85Q0.26
BLCAchr1159014718Missense_MutationnovelG13V0.25
BLCAchr1159049558Nonsense_MutationnovelQ542*0.41
BLCAchr1159014915Missense_MutationnovelA79P0.36
BLCAchr1159045425Missense_MutationnovelQ486H0.23
BLCAchr1159051735Silentrs779668092Q574Q0.44
BLCAchr1159015967Missense_MutationNAE121Q0.27
BLCAchr1159014819Nonsense_MutationnovelQ47*0.13
BLCAchr1159045402Missense_MutationNAE479K0.22
BRCAchr1159020418Silentrs774647644Q350Q0.25
BRCAchr1159051854Missense_MutationNAK614M0.56
BRCAchr1159015921SilentNAT105T0.16
BRCAchr1159032552Missense_MutationNAN397S0.18
BRCAchr1159014685Missense_MutationnovelG2E0.08
BRCAchr1159052053SilentNAS680S0.22
BRCAchr1159032659Missense_MutationnovelP433T0.05
BRCAchr1159015897Missense_MutationNAK97N0.27
BRCAchr1159051735Silentrs779668092Q574Q0.14
BRCAchr1159018328Missense_MutationnovelE217K0.11
BRCAchr1159053532Splice_SitenovelX696_splice0.07
CESCchr1159052003Nonsense_MutationNAG664*0.53
CESCchr1159051832Missense_MutationnovelE607Q0.43
CESCchr1159018572Missense_MutationnovelA298E0.24
CESCchr1159053697Missense_MutationNAL750F0.06
CESCchr1159015966SilentnovelA120A0.5
CESCchr1159020502SilentNAL378L0.35
CESCchr1159032629Missense_MutationNAE423K0.2
CESCchr1159049512SilentnovelP526P0.11
CESCchr1159032650Nonsense_MutationnovelQ430*0.31
CHOLchr11590550693'UTRnovel0.3
COADchr1159045306Missense_MutationNAD447Y0.41
COADchr11590001005'UTRnovel0.4
COADchr1159018297Missense_MutationNAI206M0.38
COADchr1159018234Silentrs370784049P185P0.26
COADchr11590549533'UTRnovel0.3
COADchr1159032571Missense_MutationNAK403N0.12
COADchr1159054900Frame_Shift_Delrs7576027430.31
COADchr1159020467Missense_MutationNAF367V0.25
COADchr11590549533'UTRnovel0.41
COADchr11590549533'UTRnovel0.4
COADchr1159052019Missense_MutationNAA669V0.29
COADchr1159053689Missense_MutationNAG748W0.33
COADchr11590549533'UTRnovel0.13
COADchr1159051842Missense_MutationnovelV610A0.09
COADchr1159016661Missense_MutationNAK170N0.39
COADchr11590549533'UTRnovel0.2
COADchr11590550513'UTRnovel0.26
COADchr11590549533'UTRnovel0.23
COADchr1159018351Frame_Shift_InsNAI227Nfs*420.46
COADchr1159015952Missense_MutationNAK116Q0.09
COADchr1159016693Nonsense_MutationnovelS181*0.1
COADchr1159014901Missense_MutationNAT74M0.36
COADchr1159051837SilentNAN608N0.47
COADchr1159020470Nonsense_MutationNAR368*0.33
COADchr1159051926Missense_Mutationrs758208458R638H0.24
COADchr1159051848Missense_Mutationrs746538717R612Q0.19
COADchr11590003185'UTRnovel0.2
COADchr1159014901Missense_MutationNAT74M0.13
COADchr1159014686Frame_Shift_DelNAK4Nfs*80.16
COADchr1159018351Missense_MutationNAE224D0.22
COADchr1159045451Missense_MutationNAS495N0.36
COADchr1159051711Missense_Mutationrs777391755E566D0.21
COADchr1159020506Nonsense_MutationnovelS380Yfs*50.11
COADchr11590550693'UTRnovel0.44
ESCAchr1159054835Missense_MutationnovelR764S0.11
ESCAchr1159016645Missense_Mutationrs138795047R165H0.23
ESCAchr1159032554Missense_MutationnovelD398N0.2
ESCAchr1159015955Missense_MutationNAT117P0.4
ESCAchr1159051893Missense_MutationnovelK627T0.26
ESCAchr1159053598SilentnovelV717V0.04
ESCAchr1159016587Missense_MutationnovelE146Q0.1
ESCAchr1159049442Missense_MutationnovelD503G0.21
ESCAchr1159018239Frame_Shift_DelnovelV188Nfs*40.15
GBMchr1159045442Missense_MutationNAP492Q0.37
GBMchr1159053672Missense_Mutationrs772714012P742L0.34
GBMchr1159015886SilentnovelL94L0.71
GBMchr1159014793Missense_MutationnovelK38T0.08
GBMchr1159014901Missense_MutationNAT74M0.51
GBMchr1159016622SilentNAA157A0.16
GBMchr1159016700Missense_MutationnovelE183D0.15
GBMchr1159051838Nonsense_MutationnovelE609*0.33
HNSCchr1159020386Nonsense_MutationnovelR340*0.17
HNSCchr1159015923Missense_MutationnovelS106L0.08
HNSCchr1159049485SilentnovelL517L0.11
HNSCchr1159051900Missense_MutationnovelI629M0.15
HNSCchr1159045423Nonsense_MutationnovelQ486*0.08
HNSCchr1159049567Missense_MutationnovelP545A0.08
HNSCchr1159032650Missense_MutationnovelQ430E0.05
KICHchr1159053708Missense_MutationnovelI754T0.11
KIRCchr11590550013'UTRnovel0.29
KIRCchr1159018576SilentNAK299K0.33
KIRCchr1159032683Frame_Shift_InsnovelF441Sfs*130.06
KIRCchr1159032512Intronnovel0.39
KIRPchr1159032509Intronnovel0.43
LGGchr1159014686Frame_Shift_DelNAK4Nfs*80.14
LGGchr1159045428Missense_MutationnovelM487I0.17
LGGchr1159018464Missense_MutationNAS262L0.13
LGGchr11590549633'UTRnovel0.43
LIHCchr1159014845Missense_MutationNAK55N0.23
LIHCchr1159045424Missense_MutationNAQ486L0.17
LIHCchr1159032531Missense_MutationNAK390R0.1
LIHCchr1159018284Missense_MutationNAK202I0.33
LUADchr1159032552Missense_Mutationrs748916757N397I0.17
LUADchr1159018340Missense_MutationNAP221A0.12
LUADchr1159016568SilentNAP139P0.4
LUADchr1159032615Missense_MutationNAS418N0.33
LUADchr11590002715'UTRnovel0.59
LUADchr11590002585'UTRnovel0.42
LUADchr1159051699SilentnovelT562T0.42
LUADchr1159051700Nonsense_MutationnovelE563*0.42
LUADchr1159053681Missense_MutationnovelG745E0.14
LUADchr1159020487Missense_MutationnovelN373K0.12
LUADchr11590002985'UTRnovel0.14
LUADchr1159020412SilentNAT348T0.24
LUADchr1159018592Missense_MutationNAD305N0.14
LUADchr1159049591Missense_MutationNAL553V0.12
LUADchr1159053619SilentnovelT724T0.39
LUADchr1159020473Missense_MutationnovelL369F0.18
LUADchr1159049492Missense_MutationnovelG520W0.3
LUADchr1159032572Missense_MutationNAL404V0.25
LUADchr1159032506Intronnovel0.43
LUADchr1159018631Missense_MutationNAG318W0.11
LUADchr1159014748Missense_MutationNAR23K0.1
LUADchr1159053569Missense_Mutationrs778037142Q708E0.14
LUADchr1159053624Missense_Mutationrs202009746N726T0.05
LUADchr1159051787Missense_MutationnovelE592Q0.04
LUADchr1159053578Missense_MutationnovelT711S0.17
LUSCchr1159018433Missense_Mutationrs372267762K252E0.23
LUSCchr1159014896SilentnovelI72I0.21
LUSCchr1159049441Missense_MutationnovelD503Y0.23
LUSCchr1159018598Missense_MutationNAL307V0.22
LUSCchr1159045370Missense_MutationnovelP468Q0.57
LUSCchr1159051906SilentNAA631A0.14
LUSCchr1159015874Missense_MutationNAK90Q0.45
LUSCchr1159032530Nonsense_MutationNAK390*0.6
OVchr1159051856Missense_MutationNAV615I0.16
OVchr1159053682SilentNAG745G0.42
OVchr11590549403'UTRnovel0.23
PAADchr1159014681Translation_Start_SitenovelM1?0.25
PAADchr1159018524Missense_MutationnovelA282V0.28
PRADchr1159018646Missense_MutationNAH323Y0.52
PRADchr1159018337Missense_MutationNAT220A0.47
PRADchr1159032601Nonsense_MutationnovelY413*0.27
PRADchr1159014887Silentrs144369567F69F0.21
PRADchr1159014896Missense_MutationnovelI72M0.36
READchr1159051842Missense_MutationnovelV610A0.27
READchr1159045380Missense_MutationnovelF471L0.08
READchr1159053673SilentnovelP742P0.16
READchr11590550613'UTRnovel0.57
SKCMchr1159018564Silentrs149200088I295I0.26
SKCMchr1159045332SilentnovelF455F0.28
SKCMchr1159016567Missense_MutationnovelP139L0.22
SKCMchr1159051996SilentnovelI661I0.35
SKCMchr1159053673SilentnovelP742P0.37
SKCMchr1159045323Missense_MutationnovelM452I0.36
SKCMchr1159049568Missense_MutationnovelP545L0.27
SKCMchr1159053652SilentNAL735L0.43
STADchr1159051711Missense_Mutationrs777391755E566D0.12
STADchr1159016579Missense_MutationnovelK143R0.28
STADchr1159052092SilentnovelV693V0.35
STADchr1159016645Missense_Mutationrs138795047R165H0.24
STADchr1159051970Missense_MutationnovelV653L0.25
STADchr1159051982Nonsense_Mutationrs747530999R657*0.09
STADchr11590549533'UTRnovel0.26
STADchr1159015938Missense_MutationnovelT111R0.06
STADchr1159014794Missense_MutationNAK38N0.12
STADchr1159018627Silentrs756278477V316V0.39
STADchr1159018337Missense_MutationNAT220A0.28
STADchr1159014927Frame_Shift_DelNAE85Kfs*30.23
STADchr1159053536Missense_MutationNAN697H0.62
STADchr1159016543Missense_MutationNAK131T0.09
STADchr1159016629Missense_MutationNAS160T0.08
STADchr1159032585Missense_MutationnovelQ408L0.15
STADchr1159049591Missense_MutationNAL553V0.15
STADchr1159049476Missense_MutationnovelM514I0.33
STADchr1159051982Nonsense_Mutationrs747530999R657*0.25
STADchr1159014927Frame_Shift_DelNAE85Kfs*30.1
STADchr1159051926Missense_Mutationrs758208458R638H0.18
STADchr1159051698Missense_MutationnovelT562S0.35
STADchr1159053699Missense_MutationNAR751T0.07
STADchr1159051983Missense_Mutationrs766761172R657Q0.35
STADchr1159045456Missense_MutationNAL497V0.14
THCAchr1159020471Missense_MutationNAR368Q0.47
UCECchr1159015893Missense_MutationNAR96I0.34
UCECchr11590549823'UTRnovel0.29
UCECchr1159049590Missense_MutationNAF552L0.17
UCECchr1159014725Missense_MutationNAE15D0.17
UCECchr1159014887Silentrs144369567F69F0.31
UCECchr1159032616SilentnovelS418S0.07
UCECchr1159018396Missense_MutationNAF239L0.34
UCECchr1159051804Missense_MutationNAK597N0.39
UCECchr1159014832Missense_MutationnovelL51S0.45
UCECchr1159032579Missense_Mutationrs769967836Q406R0.36
UCECchr1159016589Missense_MutationnovelE146D0.38
UCECchr11590550693'UTRnovel0.5
UCECchr1159018436Missense_MutationnovelF253L0.4
UCECchr1159018351Frame_Shift_InsNAI227Nfs*420.45
UCECchr1159051781Missense_MutationnovelV590I0.29
UCECchr1159018234Silentrs370784049P185P0.31
UCECchr1159032630Missense_MutationnovelE423A0.1
UCECchr1159014774Missense_MutationNAD32N0.14
UCECchr1159018611Missense_MutationnovelA311D0.16
UCECchr1159032627Missense_MutationnovelP422L0.22
UCECchr11590549533'UTRnovel0.46
UCECchr1159053563Nonsense_MutationnovelE706*0.28
UCECchr1159014932SilentnovelK84K0.15
UCECchr1159051847SilentnovelR612R0.21
UCECchr1159051728Missense_MutationnovelS572N0.2
UCECchr1159018495Missense_MutationnovelE272D0.4
UCECchr11590550693'UTRnovel0.38
UCECchr11590549533'UTRnovel0.58
UCECchr1159018343Nonsense_MutationnovelE222*0.14
UCECchr1159054876Missense_MutationnovelE778V0.38
UCECchr1159015970Missense_MutationnovelA122T0.56
UCECchr1159049493Missense_MutationnovelG520E0.29
UCECchr1159051866Missense_MutationnovelI618N0.27
UCECchr1159051982Nonsense_Mutationrs747530999R657*0.28
UCECchr1159018299Missense_MutationNAV207A0.21
UCECchr1159014804Nonsense_MutationnovelE42*0.58
UCECchr1159020478Frame_Shift_DelnovelK372Rfs*70.5
UCECchr1159014879Missense_MutationnovelK67Q0.53
UCECchr1159045329Missense_MutationnovelD454E0.33
UCECchr1159054895Missense_MutationnovelF784L0.38
UCECchr1159020451SilentnovelK361K0.33
UCECchr1159045386SilentnovelT473T0.46
UCECchr1159052023Silentrs773070697S670S0.24
UCECchr1159020371Missense_Mutationrs75796001E335K0.12
UCECchr1159032647Missense_MutationnovelP429S0.36
UCECchr1159014774Missense_MutationNAD32N0.29
UCECchr1159020470Nonsense_MutationNAR368*0.24
UCECchr1159032529Frame_Shift_InsNAT392Nfs*70.35
UCECchr1159018432Missense_MutationnovelE251D0.26
UCECchr1159032571SilentNAK403K0.29
UCECchr1159014909Missense_MutationnovelD77N0.33
UCECchr1159018245Missense_MutationnovelA189V0.41
UCECchr1159016643SilentnovelG164G0.29
UCECchr11590549533'UTRnovel0.16
UCECchr1159049546Missense_MutationnovelP538S0.08
UCECchr1159051892Missense_MutationnovelK627Q0.14
UCECchr1159014736Missense_MutationnovelD19G0.13
UCECchr1159018539Missense_Mutationrs145736033T287M0.28
UCECchr1159032571SilentNAK403K0.16
UCECchr11590549113'UTRnovel0.06
UCECchr11590549123'UTRnovel0.06
UCECchr1159020477Frame_Shift_InsnovelN373Efs*120.35
UCECchr1159018290Missense_MutationNAP204Q0.35
UCECchr11590549533'UTRnovel0.24
UCECchr1159018598Missense_MutationNAL307I0.47
UCECchr11590549533'UTRnovel0.23
UCECchr1159018557Missense_MutationNAK293T0.11
UCECchr1159049504Missense_MutationNAP524T0.32
UCECchr1159045337Missense_MutationnovelR457M0.47
UCECchr1159051804Missense_MutationNAK597N0.18
UCECchr1159032531Missense_MutationNAK390R0.22
UCECchr1159052038SilentnovelI675I0.22
UCECchr1159032633Missense_MutationnovelS424N0.34
UCECchr1159016538Frame_Shift_Delrs750703064K131Nfs*630.11
UCECchr1159016686Missense_Mutationrs757244892S179G0.13
UCECchr1159045312Missense_MutationNAI449L0.14
UCECchr1159049598Missense_MutationNAT555M0.16
UCECchr1159014927Frame_Shift_DelNAE85Kfs*30.4
UCECchr1159018513SilentnovelT278T0.25
UCECchr1159054844SilentnovelK767K0.22
UCECchr1159053688Silentrs753132913T747T0.56
UCSchr1159032558Missense_MutationnovelP399L0.43
UCSchr1159014887Silentrs144369567F69F0.08

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.02080.0017831
ESCAAMP0.40760.0022446
KIRCAMP0.09280.059566
PAADAMP0.22280.085665
READAMP0.26670.025154
SKCMAMP0.48779.6912e-06
TGCTAMP0.33330.088103
THCAAMP0.05010.075436

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

SARC0.029

Kaplan-Meier Survival Analysis

UCS0.014

Kaplan-Meier Survival Analysis

SKCM0.017

Kaplan-Meier Survival Analysis

BRCA0.038

Kaplan-Meier Survival Analysis

KIRP0.00092

Kaplan-Meier Survival Analysis

PAAD0.0023

Kaplan-Meier Survival Analysis

CESC0.041

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

UVM0.018

Kaplan-Meier Survival Analysis

OV0.041

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000163565 (Gene tree)
Gene ID
3428
Gene Symbol
IFI16
Alias
IFNGIP1|PYHIN2
Full Name
interferon gamma inducible protein 16
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
55,188 bases
Position
chr1:158,999,968-159,055,155
Accession
5395
RBP type
non-canonical RBP
Summary
This gene encodes a member of the HIN-200 (hematopoietic interferon-inducible nuclear antigens with 200 amino acid repeats) family of cytokines. The encoded protein contains domains involved in DNA binding, transcriptional regulation, and protein-protein interactions. The protein localizes to the nucleoplasm and nucleoli, and interacts with p53 and retinoblastoma-1. It modulates p53 function, and inhibits cell growth in the Ras/Raf signaling pathway. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2011]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
17699163A novel role of the interferon-inducible protein IFI16 as inducer of proinflammatory molecules in endothelial cells.J Biol Chem2007 Nov 16Caposio P-
25375629IFI16 restricts HSV-1 replication by accumulating on the hsv-1 genome, repressing HSV-1 gene expression, and directly or indirectly modulating histone modifications.PLoS Pathog2014 Nov 6Johnson KEdoi: 10.1371/journal.ppat.1004503
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000368131IFI16-2042734XM_017001150ENSP00000357113729 (aa)XP_016856639Q16666
ENST00000368132IFI16-2052704-ENSP00000357114729 (aa)-Q16666
ENST00000493884IFI16-2114138--- (aa)--
ENST00000447473IFI16-207951-ENSP00000407052180 (aa)-X6RHM1
ENST00000295809IFI16-2012867XM_005245127ENSP00000295809785 (aa)-Q16666
ENST00000562225IFI16-2121108--- (aa)--
ENST00000567661IFI16-214546-ENSP0000045609474 (aa)-H3BR65
ENST00000483916IFI16-2104138--- (aa)--
ENST00000340979IFI16-2022732-ENSP00000342741243 (aa)-A0A0A0MRB1
ENST00000448393IFI16-2082245XM_006711290ENSP00000404325673 (aa)XP_006711353Q16666
ENST00000566111IFI16-213856-ENSP0000045808483 (aa)-H3BVE6
ENST00000359709IFI16-2032609-ENSP00000352740729 (aa)-Q16666
ENST00000426592IFI16-206761-ENSP00000406406167 (aa)-H3BM18
ENST00000474473IFI16-2091095-ENSP00000456129229 (aa)-H3BR88
Gene Model
Click here to download ENSG00000163565's gene model file
Pathways
Pathway IDPathway NameSource
hsa04621NOD-like receptor signaling pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000163565Platelet Function Tests4.2500000E-007-
ENSG00000163565Platelet Function Tests3.4000000E-006-
ENSG00000163565Blood Pressure9.2912734E-005-
ENSG00000163565Blood Pressure1.3910835E-007-
ENSG00000163565Leukocyte Count5E-4723263863
ENSG00000163565Autoimmune Diseases8E-721383967
ENSG00000163565Energy Intake1E-623251661
ENSG00000163565Periodontitis3E-826962152
ENSG00000163565Tooth3E-826962152
ENSG00000163565Neutrophils3E-625884002
ENSG00000163565HIV-13E-625884002
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000163565rs16332661159036187?Periodontal disease-related phenotypes26962152[0.6-1.26] unit increase0.93EFO_0000649|EFO_0007780
ENSG00000163565rs25709161159042856?Neutrophil count in HIV-infection25884002[NR] unit decrease0.041722316EFO_0004833|EFO_0000180
ENSG00000163565rs46576161159001296GHematology traits23263863[0.053-0.07] unit increase0.0612EFO_0004308
ENSG00000163565rs8613181159032432AObesity-related traits23251661[NR] g/d increase0.04EFO_0003939
ENSG00000163565rs727095161159035061TBlood protein levels29875488[0.73-0.97] unit increase0.85EFO_0007937
ENSG00000163565rs127277641159012687GMonocyte chemoattractant protein-1 levels27989323[0.055-0.139] SD units decrease0.0971EFO_0004749
ENSG00000163565rs17724081159035859?Celiac disease or Rheumatoid arthritis21383967EFO_0000540
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000163565's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000163565IFI169562.025ENSMUSG00000090272Mndal8461.628Mus_musculus
ENSG00000163565IFI168541.546ENSMUSG00000037860Aim210042.029Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II12894224.24413532.IDAProcess
GO:0000122negative regulation of transcription by RNA polymerase II22046441.IMPProcess
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding24413532.IDAFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific24413532.IDAFunction
GO:0001819positive regulation of cytokine production22046441.TASProcess
GO:0002218activation of innate immune response21575908.IDAProcess
GO:0003690double-stranded DNA binding7536752.IDAFunction
GO:0003723RNA binding22658674.HDAFunction
GO:0005515protein binding11146555.14654789.16494870.20890285.21397192.24413532.24531343.IPIFunction
GO:0005634nucleus7536752.19158679.24413532.24531343.IDAComponent
GO:0005654nucleoplasm14654789.IDAComponent
GO:0005730nucleolus14654789.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol24531343.IPIComponent
GO:0005829cytosol-TASComponent
GO:0006914autophagy-IEAProcess
GO:0006954inflammatory response-IEAProcess
GO:0008134transcription factor binding12894224.22291595.IDAFunction
GO:0008283cell proliferation9766636.NASProcess
GO:0010506regulation of autophagy21573174.IEPProcess
GO:0016020membrane19946888.HDAComponent
GO:0016607nuclear speck19158679.IDAComponent
GO:0030097hemopoiesis9766636.NASProcess
GO:0030099myeloid cell differentiation7536752.NASProcess
GO:0030224monocyte differentiation9766636.IDAProcess
GO:0032481positive regulation of type I interferon production-TASProcess
GO:0032731positive regulation of interleukin-1 beta production21575908.IDAProcess
GO:0035458cellular response to interferon-beta-IEAProcess
GO:0040029regulation of gene expression, epigenetic24413532.IMPProcess
GO:0042149cellular response to glucose starvation21573174.IDAProcess
GO:0042771intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator14654789.IDAProcess
GO:0043392negative regulation of DNA binding22291595.IDAProcess
GO:0045071negative regulation of viral genome replication22291595.IDAProcess
GO:0045087innate immune response-IEAProcess
GO:0045824negative regulation of innate immune response22046441.IDAProcess
GO:0045892negative regulation of transcription, DNA-templated9642285.IDAProcess
GO:0045944positive regulation of transcription by RNA polymerase II11146555.IDAProcess
GO:0045944positive regulation of transcription by RNA polymerase II21575908.IMPProcess
GO:0051607defense response to virus21478870.IDAProcess
GO:0051607defense response to virus21575908.IMPProcess
GO:0071479cellular response to ionizing radiation14654789.IDAProcess
GO:0072332intrinsic apoptotic signaling pathway by p53 class mediator21573174.IMPProcess
GO:0097202activation of cysteine-type endopeptidase activity21575908.IMPProcess
GO:2000117negative regulation of cysteine-type endopeptidase activity22046441.IDAProcess
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