EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
19585652Overexpression of far upstream element binding proteins: a mechanism regulating proliferation and migration in liver cancer cells.Hepatology2009 OctMalz Mdoi: 10.1002/hep.23051.
19637194Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth.Hepatology2009 OctRabenhorst Udoi: 10.1002/hep.23098.
19087307The FUSE binding proteins FBP1 and FBP3 are potential c-myc regulators in renal, but not in prostate and bladder cancer.BMC Cancer2008 Dec 16Weber Adoi: 10.1186/1471-2407-8-369.
26177862Concomitant expression of far upstream element (FUSE) binding protein (FBP) interacting repressor (FIR) and its splice variants induce migration and invasion of non-small cell lung cancer (NSCLC) cells.J Pathol2015 NovM??ller Bdoi: 10.1002/path.4588
28667493MiR-16-1 Targeted Silences Far Upstream Element Binding Protein 1 to Advance the Chemosensitivity to Adriamycin in Gastric Cancer.Pathol Oncol Res2018 JulZhao Ddoi: 10.1007/s12253-017-0263-x

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1779486583'UTRnovel0.38
BLCAchr177964902Missense_MutationnovelL235V0.18
BLCAchr177963681Missense_Mutationrs762636934R359Q0.36
BLCAchr177978885Splice_RegionNAQ40Q0.1
BLCAchr177965182Missense_MutationNAP175S0.16
BLCAchr177963693Missense_MutationnovelG355V0.17
BRCAchr177949179Missense_MutationNAM634I0.85
BRCAchr177949233SilentNAA616A0.38
BRCAchr177964106Missense_MutationnovelQ333E0.16
BRCAchr177978973Missense_MutationNAS11Y0.18
BRCAchr177949232Missense_MutationNAE617Q0.15KH_1
BRCAchr1779486383'UTRnovel0.44
BRCAchr177965215SilentnovelL164L0.12
BRCAchr177970014Splice_SitenovelX41_splice0.06
BRCAchr177955294Missense_MutationnovelD581N0.08
CESCchr177962826Missense_MutationNAR430C0.25
CESCchr177964340Missense_MutationnovelF285S0.28
CESCchr177965135SilentnovelI190I0.37
CESCchr177962776Missense_MutationnovelK446N0.23
CESCchr177964682Missense_MutationnovelE267D0.11
CESCchr1779791965'FlankNA0.45
COADchr177965156Silentrs758508471P183P0.57
COADchr177967644Silentrs375397592P91P0.75
COADchr177978975Frame_Shift_DelNAS11Lfs*430.15
COADchr177949161SilentnovelA640A0.3
COADchr1779487373'UTRnovel0.25
COADchr177966914Missense_MutationnovelE129K0.06
COADchr177964293Frame_Shift_DelNAI301Yfs*220.14
COADchr177964096Missense_MutationNAA336V0.27
COADchr177960364SilentNAG492G0.29
COADchr177955257Missense_MutationNAM593T0.36
COADchr177978991Missense_MutationNAS5L0.11
COADchr177949207Missense_Mutationrs762248194Y625C0.14
COADchr177978975Frame_Shift_DelNAS11Lfs*430.31
COADchr177978962Missense_MutationNAA15T0.24
COADchr177964293Frame_Shift_DelNAI301Yfs*220.39
COADchr177965124Missense_MutationNAA194V0.11
ESCAchr177978975Frame_Shift_DelNAS11Lfs*430.4
GBMchr177964707Missense_MutationnovelG259D0.38
GBMchr177969945Missense_MutationnovelK64R0.48
HNSCchr177968174Nonsense_MutationnovelQ81*0.14
HNSCchr177962875Missense_MutationnovelQ413H0.12
HNSCchr177964689Missense_MutationnovelR265Q0.21
HNSCchr177949249Missense_MutationnovelY611C0.33KH_1
HNSCchr177964145Nonsense_MutationnovelE320*0.3
KICHchr177962795Missense_Mutationrs569795654R440Q0.29
KIRPchr177967055Nonsense_MutationnovelG113*0.47
KIRPchr177960365Missense_MutationnovelG492A0.42
KIRPchr177960177Splice_SitenovelX520_splice0.14
KIRPchr177949284SilentNAA599A0.21
LGGchr177960221Frame_Shift_DelnovelA513Vfs*110.72
LGGchr177964350Frame_Shift_InsnovelI282Hfs*230.39
LGGchr177966914Nonsense_MutationnovelE129*0.83
LGGchr177960184Missense_MutationNAA526P0.48
LGGchr177964252Splice_SiteNAX314_splice0.58
LGGchr177955277Nonsense_MutationNAW586*0.31
LGGchr177964109Frame_Shift_InsnovelC332Pfs*200.75
LGGchr177966752Splice_SiteNAX139_splice0.38
LGGchr177968164Splice_SiteNAX83_splice0.22
LGGchr177978975Frame_Shift_DelNAS11Lfs*430.45
LGGchr177956645Frame_Shift_DelnovelY544Lfs*220.33
LGGchr177962785Frame_Shift_DelnovelI443Rfs*470.78
LGGchr177962806Frame_Shift_DelnovelI436Mfs*80.92
LGGchr177960373Nonsense_MutationnovelY489*0.74
LGGchr177960225Frame_Shift_DelnovelN512Mfs*1530.66
LGGchr177964958Frame_Shift_DelnovelG216Efs*60.66
LGGchr177962814Nonsense_MutationnovelQ434*0.1
LGGchr177964969Splice_SitenovelX213_splice0.8
LGGchr177964748Splice_SitenovelX246_splice0.15
LGGchr177965221Frame_Shift_InsnovelR162Tfs*80.12
LGGchr177956583Frame_Shift_InsnovelT565Nfs*20.6
LGGchr177968164Splice_SiteNAX83_splice0.39
LGGchr177966885Frame_Shift_InsnovelD139*0.45
LGGchr177964112Nonsense_MutationNAR331*0.73
LGGchr177965204Frame_Shift_DelnovelI167Mfs*250.94
LGGchr177964163Splice_SiteNAX314_splice0.88
LGGchr177964701Frame_Shift_DelnovelF261Sfs*120.19
LGGchr177956583Frame_Shift_DelnovelQ564Lfs*1000.56
LGGchr177964703Frame_Shift_InsnovelR262Sfs*120.33
LGGchr177962775Frame_Shift_DelnovelE445Dfs*440.56
LGGchr177978913Frame_Shift_DelnovelF31Sfs*230.58
LGGchr177965161Nonsense_MutationNAG182*0.07
LGGchr177964107Nonsense_MutationNAC332*0.24
LGGchr177965070Missense_MutationnovelQ212P0.04
LGGchr177968166Splice_RegionnovelD83D0.54
LGGchr177962785Frame_Shift_DelnovelI443Rfs*470.74
LGGchr177978882Splice_Regionnovel0.87
LGGchr177962785Frame_Shift_DelnovelI443Rfs*470.53
LGGchr177978993Frame_Shift_DelnovelY4Ffs*240.67
LGGchr177956667Nonsense_MutationNAW537*0.81
LGGchr177964145Nonsense_MutationnovelE320*0.08
LGGchr177964959Nonsense_MutationnovelG216*0.62
LGGchr177965089Nonsense_MutationNAE206*0.76
LGGchr177966718Frame_Shift_DelnovelM149Kfs*420.42
LGGchr177968164Splice_SiteNAX83_splice0.13
LGGchr177968164Splice_SiteNAX83_splice0.59
LGGchr177966893Missense_MutationNAI136V0.44
LGGchr177964868Splice_SiteNAX245_splice0.09
LGGchr177968164Splice_SiteNAX83_splice0.72
LIHCchr1779790825'UTRnovel0.4
LIHCchr177956610Frame_Shift_DelnovelP556Lfs*1090.46
LIHCchr177963625Nonsense_MutationnovelE378*0.4
LIHCchr177978910Missense_MutationnovelK32R0.54
LUADchr177962816Missense_MutationnovelP433L0.1
LUADchr1779487033'UTRnovel0.16
LUADchr177964927SilentnovelP226P0.07
LUADchr177956666Missense_MutationNAW537C0.14
LUADchr177968189Missense_MutationnovelK76E0.3
LUADchr177960495Missense_MutationnovelG449S0.09
LUADchr177960240Missense_MutationNAP507L0.08
LUADchr177969989SilentnovelA49A0.2
LUADchr177967641Missense_MutationNAM92I0.34
LUADchr177960238Nonsense_MutationNAQ508*0.14
LUADchr177964269Missense_MutationnovelI309F0.26
LUADchr177978944Missense_Mutationrs773565597G21R0.49
LUSCchr177966712Missense_MutationNAG152V0.19
LUSCchr177966713Nonsense_MutationNAG152*0.19
LUSCchr177978923Frame_Shift_DelnovelV27Tfs*260.1
LUSCchr177979000Missense_MutationnovelA2V0.19
LUSCchr177969994Missense_MutationNAD48H0.6
LUSCchr177960183Splice_SitenovelX526_splice0.18
LUSCchr177956623Frame_Shift_DelnovelQ546Hfs*150.51
LUSCchr177962822Missense_MutationnovelG431V0.71
OVchr177978887Missense_MutationnovelQ40K0.1
OVchr177967096Missense_MutationnovelS99Y0.07
OVchr177960392In_Frame_DelnovelP475_P483del0.3
PAADchr177964965SilentnovelR214R0.05
PAADchr1779487263'UTRnovel0.45
PRADchr177960354Missense_MutationnovelP496S0.28
READchr1779486413'UTRnovel0.36
READchr177970016Splice_Siters181446878X41_splice0.27
READchr177967644Silentrs375397592P91P0.37
READchr177956661Missense_MutationNAA539V0.2
READchr177966704Nonsense_MutationNAE155*0.32
SKCMchr177966741SilentNAG142G0.3
SKCMchr177965174SilentNAF177F0.22
SKCMchr177965196Frame_Shift_InsnovelK170Ifs*310.05
SKCMchr177964674Missense_MutationNAS270L0.38
SKCMchr177960443Missense_MutationnovelP466L0.17
SKCMchr177963639Missense_MutationnovelP373L0.36
SKCMchr177963640Missense_MutationnovelP373S0.36
SKCMchr177964690Missense_Mutationrs569612114R265W0.07
SKCMchr177964690Missense_Mutationrs569612114R265W0.22
SKCMchr177962909Missense_MutationnovelI402T0.29
SKCMchr177956611Missense_MutationNAP556S0.63
SKCMchr177964872Nonsense_MutationnovelQ245*0.62
SKCMchr177968201Nonsense_MutationNAQ72*0.15
STADchr177949174Missense_MutationNAQ636P0.26
STADchr177964927SilentNAP226P0.26
STADchr177956668Missense_MutationNAW537R0.24
STADchr177962826Missense_MutationNAR430C0.4
STADchr177960470Missense_MutationNAP457H0.35
STADchr177960218Nonsense_MutationNAY514*0.1
STADchr177964258SilentNAK312K0.08
STADchr177968170Frame_Shift_DelnovelN82Mfs*190.21
STADchr177965157Missense_Mutationrs556028059P183L0.37
STADchr177962844Missense_MutationNAM424V0.2
THYMchr1779482713'Flanknovel0.23
UCECchr177956687Silentrs375876626T530T0.43
UCECchr177962922Frame_Shift_DelNAT398Pfs*20.24
UCECchr177964073Nonsense_MutationNAR344*0.38
UCECchr177962826Missense_MutationNAR430C0.26
UCECchr177960482Missense_MutationNAP453H0.27
UCECchr177968191Missense_MutationNAA75G0.3
UCECchr177978975Frame_Shift_DelNAS11Lfs*430.24
UCECchr177965160Missense_MutationnovelG182E0.08
UCECchr177978975Frame_Shift_DelNAS11Lfs*430.4
UCECchr177978975Frame_Shift_DelNAS11Lfs*430.17
UCECchr177960417Missense_MutationnovelP475S0.1
UCECchr1779790095'UTRnovel0.12
UCECchr177967079Frame_Shift_DelnovelY105Tfs*110.39
UCECchr177965221Frame_Shift_InsnovelR162Tfs*80.36
UCECchr177964059Splice_Regionnovel0.22
UCECchr177968179Missense_MutationnovelA79V0.21
UCECchr177962826Missense_MutationNAR430C0.44
UCECchr1779790685'UTRnovel0.35
UCECchr177966726SilentNAS147S0.45
UCECchr177949270Missense_MutationNAP604H0.22KH_1
UCECchr177962826Missense_MutationNAR430C0.16
UCECchr177963715Missense_MutationnovelA348T0.22
UCECchr1779486833'UTRnovel0.29
UCECchr1779482713'Flanknovel0.83
UCECchr177962826Missense_MutationNAR430C0.37
UCECchr177960400SilentNAP480P0.32
UCECchr177963581Missense_MutationnovelI392M0.28
UCECchr177970003Frame_Shift_DelnovelI45Lfs*90.52
UCECchr177967645Missense_Mutationrs537242451P91L0.46
UCECchr177969977SilentnovelL53L0.34
UCECchr177964292Frame_Shift_InsnovelI301Nfs*40.34
UCECchr177978975Frame_Shift_DelNAS11Lfs*430.33
UCECchr177962826Missense_MutationNAR430C0.31
UCECchr177964690Missense_Mutationrs569612114R265W0.46
UCECchr1779792565'Flanknovel0.3
UCECchr177978908Missense_MutationnovelD33Y0.35
UCECchr177969030Intronnovel0.28
UCECchr177963628Nonsense_MutationnovelQ377*0.32
UCECchr177964292Frame_Shift_DelnovelI301Nfs*220.43
UCECchr177960185Splice_RegionNAP525P0.35
UCECchr1779487493'UTRnovel0.5
UCECchr177964749Splice_SitenovelX246_splice0.36
UCECchr177962826Missense_MutationNAR430C0.48
UCECchr1779486443'UTRnovel0.29
UCECchr177955268SilentnovelY589Y0.45
UCECchr177978945Silentrs146004096G20G0.28
UCECchr177978975Frame_Shift_DelNAS11Lfs*430.51

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
COADDEL0.24390.00038973
STADDEL0.15650.0040659
TGCTAMP0.160.088103

Survival Analysis
CancerP-value Q-value
THYM0.042

Kaplan-Meier Survival Analysis

SARC0.0001

Kaplan-Meier Survival Analysis

ACC0.0093

Kaplan-Meier Survival Analysis

UCS0.016

Kaplan-Meier Survival Analysis

SKCM0.0018

Kaplan-Meier Survival Analysis

BRCA0.036

Kaplan-Meier Survival Analysis

KIRP0.042

Kaplan-Meier Survival Analysis

COAD0.016

Kaplan-Meier Survival Analysis

PAAD0.0088

Kaplan-Meier Survival Analysis

READ0.009

Kaplan-Meier Survival Analysis

KICH0.033

Kaplan-Meier Survival Analysis

UCEC0.01

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

LGG0.022

Kaplan-Meier Survival Analysis

LUAD0.011

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000162613 (Gene tree)
Gene ID
8880
Gene Symbol
FUBP1
Alias
FBP|FUBP
Full Name
far upstream element binding protein 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
35,151 bases
Position
chr1:77,944,055-77,979,205
Accession
4004
RBP type
canonical RBP
Summary
The protein encoded by this gene is a single stranded DNA-binding protein that binds to multiple DNA elements, including the far upstream element (FUSE) located upstream of c-myc. Binding to FUSE occurs on the non-coding strand, and is important to the regulation of c-myc in undifferentiated cells. This protein contains three domains, an amphipathic helix N-terminal domain, a DNA-binding central domain, and a C-terminal transactivation domain that contains three tyrosine-rich motifs. The N-terminal domain is thought to repress the activity of the C-terminal domain. This protein is also thought to bind RNA, and contains 3'-5' helicase activity with in vitro activity on both DNA-DNA and RNA-RNA duplexes. Aberrant expression of this gene has been found in malignant tissues, and this gene is important to neural system and lung development. Binding of this protein to viral RNA is thought to play a role in several viral diseases, including hepatitis C and hand, foot and mouth disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000359804KH_1PF00013.296e-6914
ENSP00000359804KH_1PF00013.296e-6924
ENSP00000359804KH_1PF00013.296e-6934
ENSP00000359804KH_1PF00013.296e-6944
ENSP00000359803KH_1PF00013.296.6e-6914
ENSP00000359803KH_1PF00013.296.6e-6924
ENSP00000359803KH_1PF00013.296.6e-6934
ENSP00000359803KH_1PF00013.296.6e-6944
ENSP00000402630KH_1PF00013.297.1e-2712
ENSP00000402630KH_1PF00013.297.1e-2722
ENSP00000359804KH_2PF07650.176.4e-2212
ENSP00000359804KH_2PF07650.176.4e-2222
ENSP00000359803KH_2PF07650.177e-2212
ENSP00000359803KH_2PF07650.177e-2222
ENSP00000359804DUF1897PF09005.103.8e-1112
ENSP00000359804DUF1897PF09005.103.8e-1122
ENSP00000359803DUF1897PF09005.104.1e-1112
ENSP00000359803DUF1897PF09005.104.1e-1122
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23818605Far upstream element-binding protein 1 and RNA secondary structure both mediate second-step splicing repression.Proc Natl Acad Sci U S A2013 Jul 16Li Hdoi: 10.1073/pnas.1310607110
18698806Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays.J Proteome Res2008 SepAmanchy Rdoi: 10.1021/pr800198w
9092640Identification of two proteins that bind to a pyrimidine-rich sequence in the 3'-untranslated region of GAP-43 mRNA.Nucleic Acids Res1997 Mar 15Irwin N-
25662218FUBP1: a new protagonist in splicing regulation of the DMD gene.Nucleic Acids Res2015 Feb 27Miro Jdoi: 10.1093/nar/gkv086
30343319The master regulator FUBP1: its emerging role in normal cell function and malignant development.Cell Mol Life Sci2019 JanDebaize Ldoi: 10.1007/s00018-018-2933-6
29743362Adenovirus 5 E1A-Mediated Suppression of p53 via FUBP1.J Virol2018 Jun 29Frost JRdoi: 10.1128/JVI.00439-18
21367899FUSE binding protein 1 interacts with untranslated regions of Japanese encephalitis virus RNA and negatively regulates viral replication.J Virol2011 MayChien HLdoi: 10.1128/JVI.01950-10
10698944Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression.EMBO J2000 Mar 1He L-
21285945JTV1 co-activates FBP to induce USP29 transcription and stabilize p53 in response to oxidative stress.EMBO J2011 Mar 2Liu Jdoi: 10.1038/emboj.2011.11
20711187Molecular basis of FIR-mediated c-myc transcriptional control.Nat Struct Mol Biol2010 SepCukier CDdoi: 10.1038/nsmb.1883
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000488814FUBP1-210612--- (aa)--
ENST00000370767FUBP1-2022524XM_011542391ENSP00000359803655 (aa)XP_011540693E9PEB5
ENST00000470287FUBP1-205726--- (aa)--
ENST00000294623FUBP1-2012201-ENSP00000294623653 (aa)-Q96AE4
ENST00000474632FUBP1-206639--- (aa)--
ENST00000370768FUBP1-2032378XM_011542393ENSP00000359804644 (aa)XP_011540695Q96AE4
ENST00000492405FUBP1-212668--- (aa)--
ENST00000487684FUBP1-209535--- (aa)--
ENST00000492724FUBP1-213583--- (aa)--
ENST00000421641FUBP1-204802-ENSP00000402630232 (aa)-C9JSZ1
ENST00000480673FUBP1-207262--- (aa)--
ENST00000483894FUBP1-208605--- (aa)--
ENST00000489495FUBP1-2112156--- (aa)--
Gene Model
Click here to download ENSG00000162613's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000162613Body Mass Index6E-1025673413
ENSG00000162613Body Mass Index1E-1025673413
ENSG00000162613Body Mass Index2E-1025673413
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000162613rs17382996177947094ALung cancer in never smokers28604730[1.266731374-1.793327236]1.5072039EFO_0006527|EFO_0001071
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000162613's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000162613FUBP19360.781ENSG00000088247KHSRP10073.276
ENSG00000162613FUBP16040.625ENSG00000183570PCBP38831.613
ENSG00000162613FUBP15231.609ENSG00000139910NOVA16838.667
ENSG00000162613FUBP15936.000ENSG00000090097PCBP49137.037
ENSG00000162613FUBP19354.870ENSG00000107164FUBP38265.268
ENSG00000162613FUBP15332.800ENSG00000136231IGF2BP36132.800
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000162613FUBP110069.592ENSAPOG00000014845fubp17075.817Acanthochromis_polyacanthus
ENSG00000162613FUBP110098.723ENSAMEG00000007372FUBP110096.402Ailuropoda_melanoleuca
ENSG00000162613FUBP110069.325ENSACIG00000020024fubp16973.684Amphilophus_citrinellus
ENSG00000162613FUBP110068.154ENSAPEG00000012232fubp17277.024Amphiprion_percula
ENSG00000162613FUBP19972.360ENSATEG00000018619fubp17078.146Anabas_testudineus
ENSG00000162613FUBP19397.181ENSAPLG00000005965FUBP110097.342Anas_platyrhynchos
ENSG00000162613FUBP110090.129ENSACAG00000006310FUBP19886.167Anolis_carolinensis
ENSG00000162613FUBP19971.166ENSACLG00000006708fubp17277.925Astatotilapia_calliptera
ENSG00000162613FUBP18877.799ENSAMXG00000005525fubp16486.628Astyanax_mexicanus
ENSG00000162613FUBP110099.689ENSCJAG00000007062FUBP110099.689Callithrix_jacchus
ENSG00000162613FUBP110099.845ENSCAFG00000020361FUBP110099.845Canis_familiaris
ENSG00000162613FUBP19499.187ENSTSYG00000000148FUBP110099.187Carlito_syrichta
ENSG00000162613FUBP15898.529ENSCAPG00000011052-6798.168Cavia_aperea
ENSG00000162613FUBP110098.632ENSCPOG00000002757FUBP110098.632Cavia_porcellus
ENSG00000162613FUBP110090.558ENSCCAG00000036537FUBP110084.682Cebus_capucinus
ENSG00000162613FUBP1100100.000ENSCATG00000042126FUBP1100100.000Cercocebus_atys
ENSG00000162613FUBP110099.389ENSCLAG00000005621FUBP1100100.000Chinchilla_lanigera
ENSG00000162613FUBP1100100.000ENSCSAG00000001402FUBP1100100.000Chlorocebus_sabaeus
ENSG00000162613FUBP110099.237ENSCHOG00000008177FUBP110099.237Choloepus_hoffmanni
ENSG00000162613FUBP110098.176ENSCGRG00001007103Fubp110098.176Cricetulus_griseus_chok1gshd
ENSG00000162613FUBP19498.867ENSCGRG00000003372Fubp110098.867Cricetulus_griseus_crigri
ENSG00000162613FUBP110070.661ENSCSEG00000021412fubp17076.096Cynoglossus_semilaevis
ENSG00000162613FUBP19969.231ENSCVAG00000014487fubp16085.269Cyprinodon_variegatus
ENSG00000162613FUBP110069.760ENSDARG00000029248fubp17077.155Danio_rerio
ENSG00000162613FUBP110046.121ENSDNOG00000034565-8374.699Dasypus_novemcinctus
ENSG00000162613FUBP110099.389ENSDORG00000016534Fubp110099.389Dipodomys_ordii
ENSG00000162613FUBP110087.931ENSETEG00000000948-6297.695Echinops_telfairi
ENSG00000162613FUBP18646.101ENSEBUG00000016143fubp16465.152Eptatretus_burgeri
ENSG00000162613FUBP198100.000ENSEEUG00000001287FUBP18997.917Erinaceus_europaeus
ENSG00000162613FUBP110068.835ENSELUG00000007990fubp17074.892Esox_lucius
ENSG00000162613FUBP110085.345ENSFALG00000005768FUBP16997.351Ficedula_albicollis
ENSG00000162613FUBP110099.084ENSFDAG00000014210FUBP1100100.000Fukomys_damarensis
ENSG00000162613FUBP110071.233ENSFHEG00000005230fubp17078.587Fundulus_heteroclitus
ENSG00000162613FUBP110066.667ENSGMOG00000003370fubp17070.175Gadus_morhua
ENSG00000162613FUBP110096.440ENSGALG00000008939FUBP110096.440Gallus_gallus
ENSG00000162613FUBP110069.910ENSGAFG00000020972fubp19177.727Gambusia_affinis
ENSG00000162613FUBP110070.489ENSGACG00000016563fubp17076.096Gasterosteus_aculeatus
ENSG00000162613FUBP110070.074ENSHBUG00000009835fubp18576.703Haplochromis_burtoni
ENSG00000162613FUBP110084.188ENSHGLG00000002808-7291.209Heterocephalus_glaber_female
ENSG00000162613FUBP110098.784ENSHGLG00000008415-100100.000Heterocephalus_glaber_female
ENSG00000162613FUBP110098.784ENSHGLG00100003417-10098.784Heterocephalus_glaber_male
ENSG00000162613FUBP110084.188ENSHGLG00100001414-7291.868Heterocephalus_glaber_male
ENSG00000162613FUBP110068.256ENSHCOG00000000910fubp17074.893Hippocampus_comes
ENSG00000162613FUBP110074.164ENSIPUG00000009896fubp17077.632Ictalurus_punctatus
ENSG00000162613FUBP110099.845ENSSTOG00000014312FUBP110099.845Ictidomys_tridecemlineatus
ENSG00000162613FUBP110098.145ENSJJAG00000020069Fubp1100100.000Jaculus_jaculus
ENSG00000162613FUBP110070.399ENSKMAG00000018897fubp16977.042Kryptolebias_marmoratus
ENSG00000162613FUBP110067.216ENSLBEG00000012700fubp17274.947Labrus_bergylta
ENSG00000162613FUBP110071.795ENSLOCG00000003745fubp19274.385Lepisosteus_oculatus
ENSG00000162613FUBP110098.712ENSLAFG00000003273FUBP110098.018Loxodonta_africana
ENSG00000162613FUBP110099.847ENSMFAG00000031825FUBP110099.847Macaca_fascicularis
ENSG00000162613FUBP1100100.000ENSMMUG00000002899FUBP1100100.000Macaca_mulatta
ENSG00000162613FUBP1100100.000ENSMNEG00000045212FUBP1100100.000Macaca_nemestrina
ENSG00000162613FUBP19969.298ENSMAMG00000007489fubp16067.241Mastacembelus_armatus
ENSG00000162613FUBP110071.429ENSMZEG00005024298fubp17078.337Maylandia_zebra
ENSG00000162613FUBP19496.700ENSMGAG00000009424FUBP110096.700Meleagris_gallopavo
ENSG00000162613FUBP110098.784ENSMAUG00000016428Fubp110098.784Mesocricetus_auratus
ENSG00000162613FUBP110098.632ENSMOCG00000014751Fubp110098.658Microtus_ochrogaster
ENSG00000162613FUBP18973.866ENSMMOG00000019463fubp16482.535Mola_mola
ENSG00000162613FUBP19690.723ENSMODG00000020804FUBP110090.866Monodelphis_domestica
ENSG00000162613FUBP110070.534ENSMALG00000015173fubp17077.042Monopterus_albus
ENSG00000162613FUBP110098.321MGP_CAROLIEiJ_G0025740Fubp110098.321Mus_caroli
ENSG00000162613FUBP110098.015ENSMUSG00000028034Fubp110098.015Mus_musculus
ENSG00000162613FUBP110098.779MGP_PahariEiJ_G0027191Fubp110099.291Mus_pahari
ENSG00000162613FUBP110098.168MGP_SPRETEiJ_G0026693Fubp110098.168Mus_spretus
ENSG00000162613FUBP110098.723ENSMLUG00000014802FUBP110095.224Myotis_lucifugus
ENSG00000162613FUBP110094.833ENSNGAG00000014302Fubp198100.000Nannospalax_galili
ENSG00000162613FUBP110069.350ENSNBRG00000015099fubp17277.925Neolamprologus_brichardi
ENSG00000162613FUBP110096.043ENSNLEG00000009772FUBP110096.043Nomascus_leucogenys
ENSG00000162613FUBP190100.000ENSMEUG00000007917-79100.000Notamacropus_eugenii
ENSG00000162613FUBP19199.315ENSOPRG00000001175FUBP19199.315Ochotona_princeps
ENSG00000162613FUBP110099.237ENSODEG00000002600-100100.000Octodon_degus
ENSG00000162613FUBP19966.978ENSODEG00000003657-10066.199Octodon_degus
ENSG00000162613FUBP19969.985ENSONIG00000018381fubp16978.337Oreochromis_niloticus
ENSG00000162613FUBP18992.574ENSOANG00000009777FUBP19992.881Ornithorhynchus_anatinus
ENSG00000162613FUBP19968.896ENSORLG00000003540fubp17177.704Oryzias_latipes
ENSG00000162613FUBP110068.047ENSORLG00020005908fubp17077.042Oryzias_latipes_hni
ENSG00000162613FUBP19970.607ENSORLG00015008779fubp17077.042Oryzias_latipes_hsok
ENSG00000162613FUBP110070.388ENSOMEG00000021943fubp17075.991Oryzias_melastigma
ENSG00000162613FUBP110097.890ENSOGAG00000014233FUBP110095.827Otolemur_garnettii
ENSG00000162613FUBP110098.723ENSOARG00000013259FUBP110096.386Ovis_aries
ENSG00000162613FUBP110099.847ENSPPRG00000000413FUBP110099.847Panthera_pardus
ENSG00000162613FUBP110099.847ENSPTIG00000019450FUBP110099.847Panthera_tigris_altaica
ENSG00000162613FUBP19595.915ENSPSIG00000012965FUBP110096.627Pelodiscus_sinensis
ENSG00000162613FUBP19971.296ENSPMGG00000009060fubp17176.688Periophthalmus_magnuspinnatus
ENSG00000162613FUBP110097.872ENSPEMG00000021802Fubp110099.315Peromyscus_maniculatus_bairdii
ENSG00000162613FUBP19454.054ENSPMAG00000001644-9063.514Petromyzon_marinus
ENSG00000162613FUBP110069.469ENSPFOG00000000238fubp16067.672Poecilia_formosa
ENSG00000162613FUBP110068.049ENSPLAG00000021170fubp17278.587Poecilia_latipinna
ENSG00000162613FUBP19972.558ENSPMEG00000004747fubp17378.587Poecilia_mexicana
ENSG00000162613FUBP19971.298ENSPREG00000017911fubp17078.587Poecilia_reticulata
ENSG00000162613FUBP110090.948ENSPPYG00000001219-70100.000Pongo_abelii
ENSG00000162613FUBP110098.931ENSPCAG00000012617FUBP110098.931Procavia_capensis
ENSG00000162613FUBP110099.847ENSPCOG00000024974FUBP110099.847Propithecus_coquereli
ENSG00000162613FUBP110095.420ENSPVAG00000014637FUBP110095.420Pteropus_vampyrus
ENSG00000162613FUBP110071.254ENSPNYG00000004552fubp17378.194Pundamilia_nyererei
ENSG00000162613FUBP110072.100ENSPNAG00000016207fubp18777.440Pygocentrus_nattereri
ENSG00000162613FUBP110098.145ENSRNOG00000043370Fubp110098.145Rattus_norvegicus
ENSG00000162613FUBP1100100.000ENSRBIG00000042950FUBP1100100.000Rhinopithecus_bieti
ENSG00000162613FUBP1100100.000ENSRROG00000043534FUBP1100100.000Rhinopithecus_roxellana
ENSG00000162613FUBP110099.845ENSSBOG00000027299FUBP110099.845Saimiri_boliviensis_boliviensis
ENSG00000162613FUBP19497.694ENSSHAG00000005367FUBP110098.373Sarcophilus_harrisii
ENSG00000162613FUBP110073.025ENSSFOG00015010213fubp17079.560Scleropages_formosus
ENSG00000162613FUBP110066.667ENSSMAG00000012029fubp15763.362Scophthalmus_maximus
ENSG00000162613FUBP19969.774ENSSDUG00000007383fubp16876.509Seriola_dumerili
ENSG00000162613FUBP110069.865ENSSLDG00000022863fubp17276.535Seriola_lalandi_dorsalis
ENSG00000162613FUBP110097.491ENSSARG00000011730FUBP157100.000Sorex_araneus
ENSG00000162613FUBP110093.534ENSSPUG00000008389FUBP110085.839Sphenodon_punctatus
ENSG00000162613FUBP19972.136ENSSPAG00000010161fubp16977.704Stegastes_partitus
ENSG00000162613FUBP19396.059ENSTGUG00000006841FUBP110096.217Taeniopygia_guttata
ENSG00000162613FUBP19372.139ENSTRUG00000004615fubp16577.511Takifugu_rubripes
ENSG00000162613FUBP15084.459ENSTNIG00000019815-8884.459Tetraodon_nigroviridis
ENSG00000162613FUBP182100.000ENSTBEG00000017333FUBP167100.000Tupaia_belangeri
ENSG00000162613FUBP110099.695ENSTTRG00000000096FUBP110099.695Tursiops_truncatus
ENSG00000162613FUBP19999.692ENSVPAG00000004709FUBP110099.692Vicugna_pacos
ENSG00000162613FUBP110068.664ENSXCOG00000019354fubp17277.042Xiphophorus_couchianus
ENSG00000162613FUBP19771.677ENSXMAG00000007168fubp17378.366Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003697single-stranded DNA binding8125259.TASFunction
GO:0003700DNA-binding transcription factor activity8125259.TASFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21285945.21779003.21988832.IPIFunction
GO:0005634nucleus19087307.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0006366transcription by RNA polymerase II8125259.TASProcess
GO:0010628positive regulation of gene expression19087307.IDAProcess
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