EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24358221Upregulation of cleavage and polyadenylation specific factor 4 in lung adenocarcinoma and its critical role for cancer cell survival and proliferation.PLoS One2013 Dec 16Chen Wdoi: 10.1371/journal.pone.0082728

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr799454038Nonsense_MutationnovelQ215*0.25
BLCAchr799456494SilentnovelG268G0.15
BLCAchr799454116Missense_MutationnovelE241K0.12
BLCAchr799450729Missense_MutationnovelR144Q0.14
BLCAchr799444832Silentrs759412959C49C0.47
BLCAchr799452378Missense_MutationNAE170Q0.25
BLCAchr799450754Silentrs777553781L152L0.24
BRCAchr799448262Missense_MutationNAY99S0.23
BRCAchr799456488SilentnovelL266L0.08
BRCAchr799444833Missense_Mutationrs201226770G50S0.13
BRCAchr799456453Missense_MutationNAA255T0.79zf-CCCH
BRCAchr799452373Missense_Mutationrs200506342R168Q0.53
CESCchr7994571133'UTRnovel0.32
CESCchr799450326Missense_MutationnovelK120Q0.21
CESCchr799439131Missense_MutationNAI17V0.82
CESCchr7994567143'UTRnovel0.33
CESCchr799444805Silentrs772613412V40V0.26
CESCchr799439122Missense_Mutationrs766880581D14N0.22
CESCchr7994390745'UTRnovel0.41
CESCchr7994572803'UTRnovel0.15
CESCchr799454077Nonsense_MutationNAQ228*0.35
CESCchr7994570493'UTRnovel0.45
COADchr799444796Silentrs769057045G37G0.08
COADchr7994565813'UTRrs7567572460.45
COADchr799448183Missense_MutationNAR73C0.27
COADchr7994565723'UTRnovel0.47
COADchr799454040SilentnovelQ215Q0.26
COADchr799456440SilentnovelE250E0.18
COADchr799456452Silentrs755817381Y254Y0.1
COADchr799450313SilentNAI115I0.15
COADchr799456437Silentrs767929343G249G0.43
COADchr799448236Missense_MutationnovelM90I0.05
COADchr799453994Missense_Mutationrs576966048S200L0.27
ESCAchr7994565083'UTRnovel0.3
GBMchr799453993Missense_MutationnovelS200A0.15
HNSCchr7994565813'UTRnovel0.16
KIRCchr799448250Missense_MutationNAE95V0.16
KIRCchr799450334Missense_MutationNAK122N0.15
LAMLchr799452373Missense_Mutationrs200506342R168Q0.07
LAMLchr799448148Missense_MutationnovelS61I0.08
LGGchr799444832Silentrs759412959C49C0.21
LGGchr799454124SilentnovelV243V0.24
LIHCchr799448179Missense_MutationNAW71C0.37
LIHCchr799450293Frame_Shift_InsnovelC110Mfs*190.26
LUADchr799450310SilentNAH114H0.31
LUSCchr799448132Frame_Shift_DelnovelP56Qfs*260.25
LUSCchr799450770Missense_MutationNAE158Q0.15
LUSCchr799439145SilentnovelQ21Q0.55
OVchr799454035Missense_MutationnovelN214H0.09
OVchr7994565243'UTRnovel0.29
OVchr799454092Missense_MutationnovelG233C0.12
PAADchr799450320Missense_Mutationrs762304791E118K0.18
PAADchr799454052Silentrs780938148P219P0.22
PCPGchr799456449SilentnovelH253H0.39
SARCchr7994570433'UTRnovel0.14
SKCMchr799444814Silentrs770988515F43F0.16
STADchr799444793Silentrs747343935S36S0.46
STADchr799454062Missense_MutationNAG223R0.42
STADchr799456437Silentrs767929343G249G0.3
STADchr799444804Missense_MutationNAV40A0.23
STADchr7994565683'UTRnovel0.27
UCECchr799456492Missense_MutationnovelG268R0.09
UCECchr7994572123'UTRnovel0.32
UCECchr799456500Nonstop_Mutationnovel*270Wext*200.36
UCECchr799454087Missense_MutationnovelS231N0.41
UCECchr7994573353'UTRnovel0.44
UCECchr799450755Missense_Mutationrs371928827V153M0.4
UCECchr799456496Missense_MutationnovelQ269R0.49
UCECchr7994573663'UTRnovel0.45
UCECchr799448118Splice_Regionnovel0.21
UCECchr7994572343'UTRnovel0.21
UCECchr7994571373'UTRrs5509469330.32
UCECchr799450313SilentNAI115I0.55
UCECchr799448134Silentrs147382390P56P0.08
UCECchr799444796Silentrs769057045G37G0.36
UCECchr7994566593'UTRnovel0.19
UCECchr799454045Missense_MutationnovelR217I0.48
UCECchr799448162Missense_MutationnovelV66I0.39
UCECchr799448139Missense_MutationnovelR58H0.19
UCECchr7994571013'UTRnovel0.36
UCECchr799454062Missense_MutationNAG223R0.47
UCECchr7994566173'UTRnovel0.33
UCECchr799448255Missense_MutationnovelY97H0.4

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.05560.12261
DLBCAMP0.29170.13215
PAADAMP0.19570.0002473
PAADDEL0.02170.049388
PRADAMP0.14630.012709
TGCTAMP0.63330.035574
THCADEL0.0020.27619

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

ACC0.014

Kaplan-Meier Survival Analysis

PRAD0.024

Kaplan-Meier Survival Analysis

LUSC0.015

Kaplan-Meier Survival Analysis

BRCA0.0016

Kaplan-Meier Survival Analysis

ESCA0.042

Kaplan-Meier Survival Analysis

PAAD0.0059

Kaplan-Meier Survival Analysis

KICH0.013

Kaplan-Meier Survival Analysis

UCEC0.042

Kaplan-Meier Survival Analysis

GBM0.013

Kaplan-Meier Survival Analysis

LIHC0.00039

Kaplan-Meier Survival Analysis

DLBC0.036

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000160917 (Gene tree)
Gene ID
10898
Gene Symbol
CPSF4
Alias
NAR|CPSF30
Full Name
cleavage and polyadenylation specific factor 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
18,452 bases
Position
chr7:99,438,922-99,457,373
Accession
2327
RBP type
canonical RBP
Summary
Inhibition of the nuclear export of poly(A)-containing mRNAs caused by the influenza A virus NS1 protein requires its effector domain. The NS1 effector domain functionally interacts with the cellular 30 kDa subunit of cleavage and polyadenylation specific factor 4, an essential component of the 3' end processing machinery of cellular pre-mRNAs. In influenza virus-infected cells, the NS1 protein is physically associated with cleavage and polyadenylation specific factor 4, 30kD subunit. Binding of the NS1 protein to the 30 kDa protein in vitro prevents CPSF binding to the RNA substrate and inhibits 3' end cleavage and polyadenylation of host pre-mRNAs. Thus the NS1 protein selectively inhibits the nuclear export of cellular, and not viral, mRNAs. Multiple alternatively spliced transcript variants that encode different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000395311zf-CCCHPF00642.246.5e-2012
ENSP00000395311zf-CCCHPF00642.246.5e-2022
ENSP00000402224zf-CCCHPF00642.249.7e-2012
ENSP00000402224zf-CCCHPF00642.249.7e-2022
ENSP00000292476zf-CCCHPF00642.241.2e-1912
ENSP00000292476zf-CCCHPF00642.241.2e-1922
ENSP00000401150zf-CCCHPF00642.241.4e-1612
ENSP00000401150zf-CCCHPF00642.241.4e-1622
ENSP00000396060zf-CCCHPF00642.245e-1512
ENSP00000396060zf-CCCHPF00642.245e-1522
ENSP00000392584zf-CCCHPF00642.244.2e-1111
ENSP00000415188zf-CCCHPF00642.247.9e-0711
ENSP00000402224zf-CCHCPF00098.231e-0511
ENSP00000396060zf-CCHCPF00098.231.2e-0511
ENSP00000395311zf-CCHCPF00098.231.4e-0511
ENSP00000292476zf-CCHCPF00098.231.6e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18331819Redox and heavy metal effects on the biochemical activities of an Arabidopsis polyadenylation factor subunit.Arch Biochem Biophys2008 May 1Addepalli Bdoi: 10.1016/j.abb.2008.02.027
23255794Contribution of double-stranded RNA and CPSF30 binding domains of influenza virus NS1 to the inhibition of type I interferon production and activation of human dendritic cells.J Virol2013 MarRamos Idoi: 10.1128/JVI.02247-12
25174360Nuclear localized Influenza nucleoprotein N-terminal deletion mutant is deficient in functional vRNP formation.Virol J2014 Aug 31Sanchez Adoi: 10.1186/1743-422X-11-155.
27071088Cleavage and polyadenylation specificity factor 30: An RNA-binding zinc-finger protein with an unexpected 2Fe-2S cluster.Proc Natl Acad Sci U S A2016 Apr 26Shimberg GDdoi: 10.1073/pnas.1517620113
29274231Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex.Elife2017 Dec 23Clerici Mdoi: 10.7554/eLife.33111.
30258002Influenza Virus NS1 Protein-RNA Interactome Reveals Intron Targeting.J Virol2018 Nov 27Zhang Ldoi: 10.1128/JVI.01634-18
25301781Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.Genes Dev2014 Nov 1Schonemann Ldoi: 10.1101/gad.250985.114
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000430038CPSF4-203735-ENSP0000040149644 (aa)-F8WEL7
ENST00000436336CPSF4-2041738XM_011515756ENSP00000395311244 (aa)XP_011514058O95639
ENST00000482251CPSF4-212574--- (aa)--
ENST00000484112CPSF4-213825--- (aa)--
ENST00000292476CPSF4-2011691XM_011515755ENSP00000292476269 (aa)XP_011514057O95639
ENST00000452047CPSF4-208687-ENSP00000392584229 (aa)-H7C016
ENST00000412686CPSF4-202745-ENSP00000401150112 (aa)-C9K0K2
ENST00000440514CPSF4-205578-ENSP00000415188193 (aa)-H7C419
ENST00000465132CPSF4-209927--- (aa)--
ENST00000441580CPSF4-206942XM_017011702ENSP00000402224191 (aa)XP_016867191B7Z7B0
ENST00000451876CPSF4-2071644-ENSP00000396060211 (aa)-C9JEV9
ENST00000471455CPSF4-211569--- (aa)--
ENST00000469897CPSF4-210689--- (aa)--
Gene Model
Click here to download ENSG00000160917's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
hsa05164Influenza AKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000160917rs13243267799455691?Serum metabolite levels23093944[NR] unit decrease0.1191EFO_0005653
ENSG00000160917rs883403799450355TSmoking status (ever vs never smokers)30643258[0.012-0.023] unit increase0.017332198EFO_0004318
ENSG00000160917rs10215854799439297?White blood cell count30595370EFO_0004308
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000160917's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000160917CPSF49974.775ENSG00000187959CPSF4L9267.683
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000160917CPSF46981.818ENSAPOG00000004921cpsf410074.176Acanthochromis_polyacanthus
ENSG00000160917CPSF4100100.000ENSAMEG00000006252CPSF410099.257Ailuropoda_melanoleuca
ENSG00000160917CPSF410098.214ENSACIG00000009248cpsf410087.705Amphilophus_citrinellus
ENSG00000160917CPSF410098.214ENSAOCG00000019616cpsf410084.815Amphiprion_ocellaris
ENSG00000160917CPSF410098.214ENSAPEG00000011679cpsf410084.815Amphiprion_percula
ENSG00000160917CPSF410098.214ENSATEG00000007010cpsf410085.425Anabas_testudineus
ENSG00000160917CPSF410098.214ENSACAG00000012941CPSF48993.680Anolis_carolinensis
ENSG00000160917CPSF4100100.000ENSANAG00000021360CPSF4100100.000Aotus_nancymaae
ENSG00000160917CPSF410098.214ENSACLG00000010374cpsf410084.074Astatotilapia_calliptera
ENSG00000160917CPSF410097.321ENSAMXG00000031647cpsf410085.978Astyanax_mexicanus
ENSG00000160917CPSF4100100.000ENSBTAG00000002090CPSF410098.770Bos_taurus
ENSG00000160917CPSF4100100.000ENSCJAG00000015826CPSF4100100.000Callithrix_jacchus
ENSG00000160917CPSF4100100.000ENSCAFG00000015036CPSF410098.885Canis_familiaris
ENSG00000160917CPSF4100100.000ENSCAFG00020014462CPSF410092.565Canis_lupus_dingo
ENSG00000160917CPSF4100100.000ENSCHIG00000014313CPSF410099.257Capra_hircus
ENSG00000160917CPSF4100100.000ENSTSYG00000005712-10099.180Carlito_syrichta
ENSG00000160917CPSF410092.857ENSTSYG00000008195-9991.556Carlito_syrichta
ENSG00000160917CPSF410090.625ENSTSYG00000014604-10090.204Carlito_syrichta
ENSG00000160917CPSF4100100.000ENSCAPG00000013881CPSF48799.083Cavia_aperea
ENSG00000160917CPSF4100100.000ENSCPOG00000001783CPSF410099.180Cavia_porcellus
ENSG00000160917CPSF4100100.000ENSCCAG00000028291CPSF4100100.000Cebus_capucinus
ENSG00000160917CPSF4100100.000ENSCATG00000038440CPSF4100100.000Cercocebus_atys
ENSG00000160917CPSF4100100.000ENSCLAG00000007050CPSF410099.257Chinchilla_lanigera
ENSG00000160917CPSF4100100.000ENSCSAG00000017795CPSF4100100.000Chlorocebus_sabaeus
ENSG00000160917CPSF410099.107ENSCPBG00000020869CPSF410095.833Chrysemys_picta_bellii
ENSG00000160917CPSF410088.393ENSCPBG00000010269-10080.723Chrysemys_picta_bellii
ENSG00000160917CPSF49976.577ENSCING00000021080-9755.939Ciona_intestinalis
ENSG00000160917CPSF49976.577ENSCSAVG00000011469-9753.546Ciona_savignyi
ENSG00000160917CPSF4100100.000ENSCANG00000019384CPSF4100100.000Colobus_angolensis_palliatus
ENSG00000160917CPSF4100100.000ENSCGRG00001024184Cpsf410099.180Cricetulus_griseus_chok1gshd
ENSG00000160917CPSF4100100.000ENSCGRG00000013892Cpsf410099.257Cricetulus_griseus_crigri
ENSG00000160917CPSF410098.214ENSCSEG00000019055cpsf410084.360Cynoglossus_semilaevis
ENSG00000160917CPSF410098.214ENSCVAG00000016528cpsf410083.333Cyprinodon_variegatus
ENSG00000160917CPSF410098.214ENSDARG00000020217cpsf410085.240Danio_rerio
ENSG00000160917CPSF4100100.000ENSDNOG00000006344CPSF410099.628Dasypus_novemcinctus
ENSG00000160917CPSF410099.107ENSDORG00000000742Cpsf410098.618Dipodomys_ordii
ENSG00000160917CPSF49981.982FBgn0015621Clp9954.110Drosophila_melanogaster
ENSG00000160917CPSF410099.107ENSETEG00000002608CPSF470100.000Echinops_telfairi
ENSG00000160917CPSF410091.964ENSEBUG00000012552cpsf49870.370Eptatretus_burgeri
ENSG00000160917CPSF4100100.000ENSEASG00005002487CPSF410099.180Equus_asinus_asinus
ENSG00000160917CPSF4100100.000ENSECAG00000007525CPSF410099.257Equus_caballus
ENSG00000160917CPSF468100.000ENSEEUG00000002158CPSF473100.000Erinaceus_europaeus
ENSG00000160917CPSF410097.321ENSELUG00000011481cpsf410082.847Esox_lucius
ENSG00000160917CPSF4100100.000ENSFCAG00000015070CPSF410099.257Felis_catus
ENSG00000160917CPSF49467.857ENSFALG00000012906-10056.977Ficedula_albicollis
ENSG00000160917CPSF410099.107ENSFALG00000013799CPSF410095.082Ficedula_albicollis
ENSG00000160917CPSF4100100.000ENSFDAG00000014092CPSF410098.354Fukomys_damarensis
ENSG00000160917CPSF410098.214ENSFHEG00000010880cpsf410082.963Fundulus_heteroclitus
ENSG00000160917CPSF410097.321ENSGMOG00000002330cpsf410080.233Gadus_morhua
ENSG00000160917CPSF49939.888ENSGALG00000004441-9838.764Gallus_gallus
ENSG00000160917CPSF410099.107ENSGALG00000004714CPSF410095.082Gallus_gallus
ENSG00000160917CPSF410097.321ENSGAFG00000010580cpsf410082.222Gambusia_affinis
ENSG00000160917CPSF410097.321ENSGACG00000007792cpsf410082.283Gasterosteus_aculeatus
ENSG00000160917CPSF410088.393ENSGAGG00000020579-9281.212Gopherus_agassizii
ENSG00000160917CPSF410099.107ENSGAGG00000021835CPSF410095.911Gopherus_agassizii
ENSG00000160917CPSF4100100.000ENSGGOG00000015131CPSF4100100.000Gorilla_gorilla
ENSG00000160917CPSF410098.214ENSHBUG00000013699cpsf410084.074Haplochromis_burtoni
ENSG00000160917CPSF4100100.000ENSHGLG00000017150CPSF410098.578Heterocephalus_glaber_female
ENSG00000160917CPSF498100.000ENSHGLG00100009215-10096.023Heterocephalus_glaber_male
ENSG00000160917CPSF410070.616ENSHGLG00100017302-10068.720Heterocephalus_glaber_male
ENSG00000160917CPSF410098.214ENSHCOG00000004397cpsf410080.741Hippocampus_comes
ENSG00000160917CPSF410098.214ENSIPUG00000017147cpsf410085.294Ictalurus_punctatus
ENSG00000160917CPSF4100100.000ENSSTOG00000001688CPSF410099.257Ictidomys_tridecemlineatus
ENSG00000160917CPSF4100100.000ENSJJAG00000019426Cpsf410099.257Jaculus_jaculus
ENSG00000160917CPSF410096.429ENSKMAG00000015642cpsf410081.852Kryptolebias_marmoratus
ENSG00000160917CPSF410098.214ENSLACG00000010938CPSF410089.259Latimeria_chalumnae
ENSG00000160917CPSF410084.956ENSLACG00000018470-10064.490Latimeria_chalumnae
ENSG00000160917CPSF410097.321ENSLOCG00000004814cpsf410089.219Lepisosteus_oculatus
ENSG00000160917CPSF4100100.000ENSLAFG00000000159CPSF410098.885Loxodonta_africana
ENSG00000160917CPSF4100100.000ENSMFAG00000001462CPSF4100100.000Macaca_fascicularis
ENSG00000160917CPSF4100100.000ENSMMUG00000019191CPSF4100100.000Macaca_mulatta
ENSG00000160917CPSF4100100.000ENSMNEG00000032306CPSF4100100.000Macaca_nemestrina
ENSG00000160917CPSF4100100.000ENSMLEG00000034721CPSF4100100.000Mandrillus_leucophaeus
ENSG00000160917CPSF410098.214ENSMAMG00000006244cpsf410084.074Mastacembelus_armatus
ENSG00000160917CPSF410098.214ENSMZEG00005007515cpsf410084.074Maylandia_zebra
ENSG00000160917CPSF410099.107ENSMGAG00000004235CPSF410094.762Meleagris_gallopavo
ENSG00000160917CPSF4100100.000ENSMAUG00000021253Cpsf410099.257Mesocricetus_auratus
ENSG00000160917CPSF4100100.000ENSMICG00000017429CPSF410099.628Microcebus_murinus
ENSG00000160917CPSF4100100.000ENSMOCG00000014901Cpsf410099.257Microtus_ochrogaster
ENSG00000160917CPSF410098.214ENSMMOG00000001813cpsf410085.308Mola_mola
ENSG00000160917CPSF4100100.000ENSMODG00000001367CPSF410097.770Monodelphis_domestica
ENSG00000160917CPSF410096.429ENSMALG00000012611cpsf410082.963Monopterus_albus
ENSG00000160917CPSF4100100.000MGP_CAROLIEiJ_G0028012Cpsf410099.257Mus_caroli
ENSG00000160917CPSF4100100.000ENSMUSG00000029625Cpsf410099.257Mus_musculus
ENSG00000160917CPSF4100100.000MGP_PahariEiJ_G0024581Cpsf410099.257Mus_pahari
ENSG00000160917CPSF4100100.000MGP_SPRETEiJ_G0029013Cpsf410099.628Mus_spretus
ENSG00000160917CPSF4100100.000ENSMPUG00000016508CPSF410099.257Mustela_putorius_furo
ENSG00000160917CPSF4100100.000ENSMLUG00000010980CPSF410098.095Myotis_lucifugus
ENSG00000160917CPSF4100100.000ENSNGAG00000001567Cpsf410098.885Nannospalax_galili
ENSG00000160917CPSF410098.214ENSNBRG00000003943cpsf49883.740Neolamprologus_brichardi
ENSG00000160917CPSF4100100.000ENSNLEG00000011074CPSF4100100.000Nomascus_leucogenys
ENSG00000160917CPSF4100100.000ENSMEUG00000006955CPSF410097.770Notamacropus_eugenii
ENSG00000160917CPSF4100100.000ENSOPRG00000013663CPSF410098.885Ochotona_princeps
ENSG00000160917CPSF4100100.000ENSODEG00000011181-10099.257Octodon_degus
ENSG00000160917CPSF410075.000ENSODEG00000009779-10074.359Octodon_degus
ENSG00000160917CPSF410092.857ENSODEG00000018283-9184.583Octodon_degus
ENSG00000160917CPSF410098.214ENSONIG00000008495cpsf410084.074Oreochromis_niloticus
ENSG00000160917CPSF410080.357ENSOANG00000009568-10052.518Ornithorhynchus_anatinus
ENSG00000160917CPSF4100100.000ENSOANG00000007729CPSF410096.170Ornithorhynchus_anatinus
ENSG00000160917CPSF4100100.000ENSOCUG00000002437CPSF47098.885Oryctolagus_cuniculus
ENSG00000160917CPSF410098.214ENSORLG00000022798cpsf410083.271Oryzias_latipes
ENSG00000160917CPSF410098.214ENSORLG00020008548cpsf410083.271Oryzias_latipes_hni
ENSG00000160917CPSF410098.214ENSORLG00015019575cpsf410082.900Oryzias_latipes_hsok
ENSG00000160917CPSF410097.321ENSOMEG00000005176cpsf410083.886Oryzias_melastigma
ENSG00000160917CPSF4100100.000ENSOGAG00000010884CPSF410099.628Otolemur_garnettii
ENSG00000160917CPSF49693.519ENSOARG00000018668CPSF410087.912Ovis_aries
ENSG00000160917CPSF4100100.000ENSPPAG00000043355CPSF410099.628Pan_paniscus
ENSG00000160917CPSF4100100.000ENSPPRG00000003134CPSF410099.257Panthera_pardus
ENSG00000160917CPSF4100100.000ENSPTIG00000005604CPSF49099.174Panthera_tigris_altaica
ENSG00000160917CPSF4100100.000ENSPTRG00000019453CPSF410099.628Pan_troglodytes
ENSG00000160917CPSF4100100.000ENSPANG00000023123CPSF4100100.000Papio_anubis
ENSG00000160917CPSF410098.214ENSPKIG00000014278cpsf410084.307Paramormyrops_kingsleyae
ENSG00000160917CPSF410084.821ENSPSIG00000018198-10064.767Pelodiscus_sinensis
ENSG00000160917CPSF410099.107ENSPSIG00000011229CPSF410095.370Pelodiscus_sinensis
ENSG00000160917CPSF410098.214ENSPMGG00000017735cpsf410078.862Periophthalmus_magnuspinnatus
ENSG00000160917CPSF4100100.000ENSPEMG00000004508Cpsf410099.257Peromyscus_maniculatus_bairdii
ENSG00000160917CPSF4100100.000ENSPCIG00000024776CPSF410097.770Phascolarctos_cinereus
ENSG00000160917CPSF410097.321ENSPFOG00000014912cpsf410082.222Poecilia_formosa
ENSG00000160917CPSF410097.321ENSPLAG00000009599cpsf410078.862Poecilia_latipinna
ENSG00000160917CPSF410097.321ENSPMEG00000009790cpsf410082.222Poecilia_mexicana
ENSG00000160917CPSF410097.321ENSPREG00000018166cpsf410079.182Poecilia_reticulata
ENSG00000160917CPSF410099.107ENSPPYG00000017378CPSF410099.145Pongo_abelii
ENSG00000160917CPSF4100100.000ENSPCAG00000001892CPSF410098.141Procavia_capensis
ENSG00000160917CPSF4100100.000ENSPCOG00000012771CPSF410099.257Propithecus_coquereli
ENSG00000160917CPSF4100100.000ENSPVAG00000007531CPSF410092.565Pteropus_vampyrus
ENSG00000160917CPSF410098.214ENSPNYG00000018559cpsf410084.074Pundamilia_nyererei
ENSG00000160917CPSF410098.214ENSPNAG00000003736cpsf410087.085Pygocentrus_nattereri
ENSG00000160917CPSF4100100.000ENSRNOG00000000985Cpsf410099.052Rattus_norvegicus
ENSG00000160917CPSF4100100.000ENSRBIG00000033886CPSF4100100.000Rhinopithecus_bieti
ENSG00000160917CPSF4100100.000ENSRROG00000040431CPSF4100100.000Rhinopithecus_roxellana
ENSG00000160917CPSF4100100.000ENSSBOG00000020493CPSF4100100.000Saimiri_boliviensis_boliviensis
ENSG00000160917CPSF4100100.000ENSSHAG00000011533CPSF410097.770Sarcophilus_harrisii
ENSG00000160917CPSF410097.321ENSSFOG00015007883cpsf410086.232Scleropages_formosus
ENSG00000160917CPSF410097.321ENSSMAG00000006374cpsf410086.235Scophthalmus_maximus
ENSG00000160917CPSF410098.214ENSSDUG00000018887cpsf410083.333Seriola_dumerili
ENSG00000160917CPSF410098.214ENSSLDG00000019078cpsf410084.074Seriola_lalandi_dorsalis
ENSG00000160917CPSF4100100.000ENSSARG00000012416CPSF410099.573Sorex_araneus
ENSG00000160917CPSF410086.607ENSSPUG00000014803-9764.135Sphenodon_punctatus
ENSG00000160917CPSF410098.214ENSSPUG00000003549CPSF410094.424Sphenodon_punctatus
ENSG00000160917CPSF410098.214ENSSPAG00000006174cpsf410087.295Stegastes_partitus
ENSG00000160917CPSF4100100.000ENSSSCG00000026896CPSF410099.590Sus_scrofa
ENSG00000160917CPSF410099.107ENSTGUG00000007552CPSF410093.902Taeniopygia_guttata
ENSG00000160917CPSF410098.214ENSTRUG00000024220cpsf410081.111Takifugu_rubripes
ENSG00000160917CPSF410098.214ENSTNIG00000006265cpsf410081.481Tetraodon_nigroviridis
ENSG00000160917CPSF410092.857ENSTBEG00000011406CPSF410090.171Tupaia_belangeri
ENSG00000160917CPSF4100100.000ENSTTRG00000003007CPSF410078.810Tursiops_truncatus
ENSG00000160917CPSF4100100.000ENSUAMG00000008051CPSF48598.649Ursus_americanus
ENSG00000160917CPSF4100100.000ENSUMAG00000009474CPSF410098.770Ursus_maritimus
ENSG00000160917CPSF4100100.000ENSVVUG00000008824CPSF410098.770Vulpes_vulpes
ENSG00000160917CPSF49987.387ENSXETG00000004641cpsf4l9960.821Xenopus_tropicalis
ENSG00000160917CPSF410090.164ENSXETG00000009892cpsf410088.172Xenopus_tropicalis
ENSG00000160917CPSF410097.321ENSXCOG00000016040cpsf410083.886Xiphophorus_couchianus
ENSG00000160917CPSF410097.321ENSXMAG00000024670cpsf410082.222Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0005515protein binding19136632.25416956.28169297.IPIFunction
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21873635.IBAComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21102410.IDAComponent
GO:0006369termination of RNA polymerase II transcription-TASProcess
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation-TASProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0008270zinc ion binding-IEAFunction
GO:0031124mRNA 3'-end processing-TASProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0046778modification by virus of host mRNA processing-TASProcess
GO:0098789pre-mRNA cleavage required for polyadenylation21873635.IBAProcess
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us