EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
22664726ATAD3B is a human embryonic stem cell specific mitochondrial protein, re-expressed in cancer cells, that functions as dominant negative for the ubiquitous ATAD3A.Mitochondrion2012 JulMerle Ndoi: 10.1016/j.mito.2012.05.005

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr11487900Missense_Mutationrs199705339R418W0.15
BLCAchr11485815Missense_MutationnovelV314L0.25
BLCAchr11490203IntronNA0.25
BLCAchr11490253Splice_Regionnovel0.48
BLCAchr11485784Splice_RegionnovelV303V0.15
BLCAchr11482178SilentNAE185E0.13
BLCAchr11486661Missense_Mutationrs139682140R403W0.21
BLCAchr11487900Missense_Mutationrs199705339R418W0.15
BLCAchr11485171Missense_Mutationrs781172015Q302H0.32
BRCAchr11490662Silentrs754972620V535V0.87
BRCAchr114959613'UTRnovel0.5
BRCAchr11487900Missense_Mutationrs199705339R418W0.38
BRCAchr114958573'UTRnovel0.29
BRCAchr11482563Missense_MutationnovelF233L0.1
CESCchr11490387Missense_MutationNAD490N0.15
CESCchr11490256Splice_SiteNAX446_splice0.37
CESCchr11485799SilentNAL308L0.2
CESCchr11495724Missense_MutationnovelW618C0.1
CESCchr11482651IntronNA0.26
CESCchr11482653Intronrs3768020440.17
COADchr11485803Nonsense_Mutationrs751720138R310*0.35
COADchr11495782Missense_Mutationrs752824611R638W0.26
COADchr11495792Frame_Shift_Insrs577360633G644Rfs*100.3
COADchr11486662Missense_Mutationrs770117658R403Q0.41
COADchr11485072Silentrs781603814A269A0.43
COADchr11490590Silentrs530433509Y511Y0.27
COADchr11490169Intronnovel0.23
COADchr11495522Missense_MutationnovelE551V0.16
COADchr11486667Missense_Mutationrs750391230G405S0.21
COADchr11482248Missense_Mutationrs777121713E209K0.25
COADchr11485792Missense_Mutationrs367992193R306Q0.67
ESCAchr11477290SilentnovelA74A0.54
ESCAchr11482150Missense_Mutationrs765374341R176Q0.27
GBMchr11482172Missense_Mutationrs748908531K183N0.27
GBMchr11477320Silentrs142559400T84T0.37
HNSCchr11482594Missense_Mutationrs3979437R244W0.15
HNSCchr11495490Silentrs757100078T540T0.58
HNSCchr11482211Silentrs757834254R196R0.5
HNSCchr11485789Missense_Mutationrs138300243R305Q0.31
KICHchr11490423Missense_Mutationrs371526893R502W0.72
KIRPchr11490669Nonsense_MutationnovelQ538*0.39
KIRPchr11490191Intronnovel0.18
LGGchr11489240Missense_Mutationrs371673051A435T0.34
LGGchr11490195Intronnovel0.44
LGGchr11486153Missense_MutationNAR336K0.33
LGGchr114959123'UTRnovel0.18
LIHCchr11490565Missense_MutationnovelR503L0.43
LUADchr11477272Splice_SiteNAX69_splice0.57
LUADchr11490184Intronnovel0.13
LUADchr11485097Missense_Mutationrs376567838R278W0.22
LUADchr11477302SilentNAA78A0.79
LUADchr11495798Missense_Mutationrs148302536P643L0.08
LUADchr11479051Missense_MutationnovelR129S0.39
LUADchr11486572Missense_MutationNAY373F0.08
LUADchr11482579Missense_MutationNAA239S0.69
LUADchr11477275Splice_RegionnovelR69R0.3
LUADchr11485169Nonsense_MutationnovelQ302*0.08
LUADchr11490391Missense_MutationnovelN491I0.2
LUSCchr11495782Missense_Mutationrs752824611R638W0.12
LUSCchr11490283Frame_Shift_InsnovelR466Lfs*140.23
LUSCchr11495748Silentrs533689685G626G0.17
LUSCchr11490332SilentnovelV471V0.44
LUSCchr11490250Splice_Regionnovel0.25
LUSCchr11477294Missense_MutationnovelN76Y0.32
OVchr11495517SilentnovelL549L0.43
PCPGchr11486553Missense_MutationnovelL367M0.15
PRADchr114958233'UTRnovel0.23
PRADchr11490182Intronnovel0.33
PRADchr11486588Silentrs772706411G378G0.2
READchr11477319Missense_Mutationrs144497634T84M0.26
READchr11495535Silentrs112543187D555D0.36
READchr11486170Missense_MutationNAR342W0.16
READchr11485786Missense_MutationnovelS304N0.41
READchr11482256SilentNAI211I0.34
SARCchr11482220Silentrs544884479A199A0.51
SARCchr11477289Missense_Mutationrs148312059A74V0.38
SARCchr11490378SilentnovelL487L0.49
SKCMchr11482576Missense_Mutationrs757344083R238C0.29
SKCMchr11485131Missense_MutationnovelS289F0.33
SKCMchr11486191SilentnovelL349L0.28
SKCMchr114958413'UTRnovel0.23
SKCMchr11495600Missense_MutationNAP577L0.68
SKCMchr11482297Missense_MutationnovelS225F0.32
SKCMchr11482298SilentnovelS225S0.32
SKCMchr11495795Missense_MutationNAP642L0.86
SKCMchr11490374SilentnovelV485V0.58
SKCMchr11490338Silentrs201433699F473F0.38
SKCMchr11490338Silentrs201433699F473F0.47
SKCMchr11482241SilentNAI206I0.15
SKCMchr11486190SilentNAI348I0.48
SKCMchr11480907Missense_Mutationrs145500839S162F0.21
SKCMchr11482285Missense_MutationNAT221I0.26
STADchr11485791Missense_Mutationrs759930254R306W0.58
STADchr11489240Missense_Mutationrs371673051A435T0.34
STADchr11489239Silentrs770357971N434N0.21
STADchr11487890Silentrs759328778D414D0.14
STADchr11486183Missense_MutationNAR346M0.18
STADchr11482245Missense_MutationnovelR208C0.12
STADchr11480876Missense_MutationNAN152D0.14
STADchr11486177Missense_Mutationrs368191921L344P0.07
TGCTchr114958463'UTRrs5411753020.19
TGCTchr11495805Missense_MutationnovelH645Q0.15
UCECchr11490565Missense_MutationNAR503H0.58
UCECchr11480884Missense_MutationNAE154D0.36
UCECchr11480884Missense_MutationNAE154D0.28
UCECchr11486550Missense_Mutationrs757157792A366T0.14
UCECchr114958833'UTRrs5642441480.2
UCECchr11489228Missense_MutationnovelA431S0.4
UCECchr11490211Intronnovel0.23
UCECchr11486215Missense_MutationnovelG357R0.33
UCECchr11495671Missense_MutationnovelD601N0.41
UCECchr11482609Missense_MutationnovelA249T0.32
UCECchr11489226Missense_MutationnovelR430I0.21
UCECchr11482212Missense_Mutationrs778410435A197T0.36
UCECchr11486579SilentNAI375I0.29
UCECchr11482576Missense_Mutationrs757344083R238C0.6
UCECchr11485128Missense_Mutationrs746903013T288M0.18
UCECchr11489259Missense_MutationnovelG441D0.06
UCECchr114958833'UTRrs5642441480.24
UCECchr11495592Silentrs756775187A574A0.29
UCECchr11478690Missense_Mutationrs200050752A110V0.34
UCECchr11485081SilentnovelG272G0.18
UCECchr11495566Nonsense_Mutationrs745960753R566*0.3
UCECchr11489241Missense_MutationnovelA435V0.53
UCECchr11490347Silentrs763121998P476P0.41
UCECchr11490365Missense_MutationnovelE482D0.47
UCECchr11478736SilentnovelQ125Q0.3
UCECchr11480866Splice_SitenovelX149_splice0.33
UCECchr11486328Intronnovel0.37
UCECchr11487870Missense_MutationnovelL408F0.26
UCECchr11486134Missense_Mutationrs776507286D330N0.29
UCECchr11482272Missense_Mutationrs768804040E217K0.43
UCECchr11490257Splice_RegionnovelK446K0.55
UCECchr11482658Intronnovel0.06
UCECchr11487876Missense_Mutationrs148709813M410V0.09
UCECchr11478601Intronnovel0.28
UCECchr11482576Missense_MutationnovelR238S0.39
UCECchr11486170Missense_MutationNAR342W0.25
UCECchr11482543Splice_SiteNAX227_splice0.49
UCECchr11486163Missense_MutationNAK339N0.3
UCECchr11485060Missense_MutationnovelK265N0.56
UCECchr11490285Missense_MutationnovelP456S0.76

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.11530.00029523
DLBCDEL0.18750.011841
HNSCDEL0.14187.0766e-07
KIRCDEL0.14392.3538e-09
KIRPDEL0.1841.462e-09
LIHCDEL0.40271.1606e-33
LUADDEL0.13570.0024765
LUSCDEL0.34732.5882e-07
MESODEL0.34482.434e-07
SARCDEL0.24128.425e-11
SKCMDEL0.16895.1876e-09
TGCTDEL0.18670.00046313
UCSDEL0.30360.0051125

Survival Analysis
CancerP-value Q-value
STAD0.015

Kaplan-Meier Survival Analysis

SARC0.0093

Kaplan-Meier Survival Analysis

MESO0.022

Kaplan-Meier Survival Analysis

ACC0.0001

Kaplan-Meier Survival Analysis

PRAD0.041

Kaplan-Meier Survival Analysis

COAD0.048

Kaplan-Meier Survival Analysis

PCPG0.024

Kaplan-Meier Survival Analysis

LIHC0.00017

Kaplan-Meier Survival Analysis

DLBC0.03

Kaplan-Meier Survival Analysis

LGG0.0026

Kaplan-Meier Survival Analysis

OV0.031

Kaplan-Meier Survival Analysis

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000160072 (Gene tree)
Gene ID
83858
Gene Symbol
ATAD3B
Alias
TOB3|KIAA1273
Full Name
ATPase family AAA domain containing 3B
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
37,748 bases
Position
chr1:1,471,732-1,509,479
Accession
24007
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is localized to the mitochondrial inner membrane, where it can bind to a highly-related protein, ATAD3A. ATAD3A appears to interact with matrix nucleoid complexes, and the encoded protein negatively regulates that interaction. This gene is expressed almost exclusively in pluripotent embryonic stem cells and some cancer cells. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000474481ATAD3B-2043367--- (aa)--
ENST00000485748ATAD3B-2053233--- (aa)--
ENST00000472194ATAD3B-2034314--- (aa)--
ENST00000378736ATAD3B-202414--- (aa)--
ENST00000308647ATAD3B-2012448XM_005244806ENSP00000311766648 (aa)XP_005244863Q5T9A4
Gene Model
Click here to download ENSG00000160072's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000160072's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005524ATP binding-IEAFunction
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion-IDAComponent
GO:0005743mitochondrial inner membrane-IEAComponent
GO:0005886plasma membrane-TASComponent
GO:0007005mitochondrion organization21873635.IBAProcess
GO:0008270zinc ion binding21873635.IBAFunction
GO:0030667secretory granule membrane-TASComponent
GO:0043312neutrophil degranulation-TASProcess
GO:0101003ficolin-1-rich granule membrane-TASComponent
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