EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr822034510Missense_MutationnovelK178E0.18
BLCAchr822034538Missense_MutationnovelE187A0.41
CESCchr822025290Silentrs372304710V14V0.14
COADchr822025696Missense_MutationNAL65R0.3Nucleoplasmin
COADchr822025732Missense_Mutationrs756290241P77L0.21Nucleoplasmin
COADchr8220366963'UTRnovel0.56
COADchr822025461SilentNAR28R0.35
ESCAchr822034509Frame_Shift_Insrs770540772L181Afs*130.78
ESCAchr8220367503'UTRnovel0.71
GBMchr822034214Missense_MutationnovelE157V0.09
HNSCchr822025759Nonsense_MutationnovelS86*0.26Nucleoplasmin
HNSCchr822034263SilentnovelA173A0.09
LAMLchr822036529Splice_RegionNA0.14
LIHCchr8220367883'UTRnovel0.42
LIHCchr8220367173'UTRnovel0.38
LIHCchr822034111Missense_MutationnovelA123S0.42
LUADchr822034261Missense_MutationnovelA173S0.14
LUADchr822033205Missense_MutationNAS116C0.38
LUADchr822033160Missense_Mutationrs752056694P101S0.15
LUSCchr822025167Intronnovel0.27
LUSCchr822025716Missense_MutationnovelD72N0.56Nucleoplasmin
LUSCchr822025461SilentNAR28R0.5
OVchr822025212Splice_Regionnovel0.41
OVchr822025504Missense_MutationnovelR43G0.83Nucleoplasmin
SARCchr822033190Missense_MutationnovelG111R0.07
SKCMchr822033214Missense_Mutationrs773383353E119K0.4
SKCMchr822025218Splice_Regionnovel0.32
SKCMchr822034249Missense_MutationNAP169S0.33
SKCMchr822034256Missense_MutationNAK171T0.24
SKCMchr822034250Missense_MutationnovelP169L0.79
SKCMchr822034251SilentnovelP169P0.79
SKCMchr822034222Missense_MutationNAP160S0.15
SKCMchr822033177SilentnovelL106L0.68
STADchr822034508Splice_SiteNAX178_splice0.05
STADchr822025459Missense_MutationNAR28W0.18Nucleoplasmin
STADchr822025770Missense_Mutationrs775998097M90V0.2Nucleoplasmin
UCECchr822025513Missense_MutationnovelL46F0.5Nucleoplasmin
UCECchr822034211Missense_MutationnovelE156G0.14
UCECchr822025505Missense_MutationnovelR43M0.44Nucleoplasmin
UCECchr822025263Silentrs748152197S5S0.22
UCECchr822025773Splice_SiteNAX90_splice0.3
UCECchr822033176Missense_MutationNAL106R0.13
UCECchr822034117Missense_MutationnovelD125Y0.44
UCECchr822025149Intronnovel0.11
UCECchr822036499Silentrs199619291S191S0.14
UCECchr822025507SilentnovelL44L0.09
UCECchr8220367323'UTRnovel0.23
UCECchr822025684Missense_MutationNAR61H0.28Nucleoplasmin
UCECchr822033192SilentnovelG111G0.18
UCECchr822034262Missense_Mutationrs376012931A173V0.39
UCECchr822034118Missense_Mutationrs573320759D125G0.06
UCECchr822034519SilentnovelL181L0.21
UCECchr822025513Missense_MutationnovelL46F0.3Nucleoplasmin
UCECchr822034140Silentrs777907377E132E0.18
UCECchr822036668Nonsense_MutationnovelG211*0.4
UCECchr822025452Missense_MutationnovelQ25H0.29Nucleoplasmin
UCECchr822034221SilentnovelS159S0.38
UCECchr822025503SilentnovelC42C0.37

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCADEL0.56134.5185e-08
DLBCDEL0.250.15679
ESCADEL0.4130.060925
PAADDEL0.24460.050455
PRADDEL0.55895.8548e-30
READDEL0.56970.20625
UCSDEL0.51790.0031922

Survival Analysis
CancerP-value Q-value
MESO0.0037

Kaplan-Meier Survival Analysis

UCS0.047

Kaplan-Meier Survival Analysis

SKCM0.0092

Kaplan-Meier Survival Analysis

KIRP0.005

Kaplan-Meier Survival Analysis

PAAD0.005

Kaplan-Meier Survival Analysis

UCEC0.049

Kaplan-Meier Survival Analysis

LGG0.00072

Kaplan-Meier Survival Analysis

UVM0.0061

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000158806 (Gene tree)
Gene ID
10361
Gene Symbol
NPM2
Alias
N
Full Name
nucleophosmin/nucleoplasmin 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
13,190 bases
Position
chr8:22,023,708-22,036,897
Accession
7930
RBP type
canonical RBP
Summary
(Nucleophosmin/Nucleoplasmin 2) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and enzyme binding. An important paralog of this gene is NPM1.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000428016NucleoplasminPF03066.151e-3411
ENSP00000370941NucleoplasminPF03066.151.1e-3411
ENSP00000481018NucleoplasminPF03066.151.1e-3411
ENSP00000289820NucleoplasminPF03066.155.2e-3411
ENSP00000381032NucleoplasminPF03066.155.2e-3411
ENSP00000427741NucleoplasminPF03066.155.2e-3411
ENSP00000429413NucleoplasminPF03066.155.2e-3411
ENSP00000481077NucleoplasminPF03066.155.2e-3411
ENSP00000429984NucleoplasminPF03066.156.1e-2111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000289820NPM2-2011100-ENSP00000289820214 (aa)-Q86SE8
ENST00000397940NPM2-2031874XM_011544364ENSP00000381032214 (aa)XP_011542666Q86SE8
ENST00000615914NPM2-213411-ENSP00000481018136 (aa)-Q86SE8
ENST00000521157NPM2-2091484XM_011544360ENSP00000429413214 (aa)XP_011542662Q86SE8
ENST00000522953NPM2-211373--- (aa)--
ENST00000520180NPM2-207417--- (aa)--
ENST00000520125NPM2-206570-ENSP0000042998499 (aa)-E5RGN1
ENST00000518119NPM2-2041190-ENSP00000427741214 (aa)-Q86SE8
ENST00000524322NPM2-212178--- (aa)--
ENST00000621538NPM2-214645-ENSP00000481077214 (aa)-Q86SE8
ENST00000519373NPM2-205520--- (aa)--
ENST00000522813NPM2-210565-ENSP00000428016137 (aa)-E5RFQ8
ENST00000381530NPM2-202925-ENSP00000370941136 (aa)-Q86SE8
ENST00000520456NPM2-208497--- (aa)--
Gene Model
Click here to download ENSG00000158806's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000158806Birth Weight5E-623251661
ENSG00000158806Cerebrospinal Fluid1E-1628031287
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000158806rs12550716822031059?Cerebrospinal fluid biomarker levels28031287EFO_0006794
ENSG00000158806rs11776272822027033GObesity-related traits23251661[NR] kg increase0.05EFO_0004344
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000158806's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000158806NPM27639.423ENSG00000181163NPM16830.055
ENSG00000158806NPM28436.145ENSG00000107833NPM37038.889
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000158806NPM28962.500ENSAMEG00000001239-9948.815Ailuropoda_melanoleuca
ENSG00000158806NPM29169.192ENSAMEG00000003542-9169.697Ailuropoda_melanoleuca
ENSG00000158806NPM29946.043ENSACAG00000000163-8442.778Anolis_carolinensis
ENSG00000158806NPM29380.597ENSANAG00000028994-8082.105Aotus_nancymaae
ENSG00000158806NPM210092.929ENSANAG00000038138-9991.852Aotus_nancymaae
ENSG00000158806NPM29339.000ENSAMXG00000038475npm2b5439.815Astyanax_mexicanus
ENSG00000158806NPM28539.655ENSAMXG00000001084npm2a7640.678Astyanax_mexicanus
ENSG00000158806NPM210063.636ENSBTAG00000046918NPM29464.249Bos_taurus
ENSG00000158806NPM210090.909ENSCJAG00000020389NPM29989.630Callithrix_jacchus
ENSG00000158806NPM29965.566ENSCAFG00020015227-9168.844Canis_lupus_dingo
ENSG00000158806NPM29862.085ENSCAFG00020015318-9861.137Canis_lupus_dingo
ENSG00000158806NPM25170.423ENSCAFG00020017926-9763.281Canis_lupus_dingo
ENSG00000158806NPM29963.551ENSCAFG00020007666-9462.617Canis_lupus_dingo
ENSG00000158806NPM29667.368ENSCAFG00020015194-9863.507Canis_lupus_dingo
ENSG00000158806NPM210064.646ENSCHIG00000026056NPM28766.477Capra_hircus
ENSG00000158806NPM29979.259ENSTSYG00000026275NPM29979.259Carlito_syrichta
ENSG00000158806NPM28166.964ENSCAPG00000006057NPM28264.557Cavia_aperea
ENSG00000158806NPM28166.964ENSCPOG00000039799NPM28264.557Cavia_porcellus
ENSG00000158806NPM210090.909ENSCCAG00000035076NPM29990.370Cebus_capucinus
ENSG00000158806NPM210097.980ENSCATG00000031833NPM210097.059Cercocebus_atys
ENSG00000158806NPM210059.596ENSCLAG00000013600NPM29362.011Chinchilla_lanigera
ENSG00000158806NPM210097.980ENSCSAG00000016588NPM210096.296Chlorocebus_sabaeus
ENSG00000158806NPM25668.908ENSCHOG00000012753-8671.963Choloepus_hoffmanni
ENSG00000158806NPM210098.990ENSCANG00000040109NPM210097.059Colobus_angolensis_palliatus
ENSG00000158806NPM28871.579ENSCGRG00001002208Npm29267.337Cricetulus_griseus_chok1gshd
ENSG00000158806NPM28871.579ENSCGRG00000005105Npm29267.337Cricetulus_griseus_crigri
ENSG00000158806NPM28332.927ENSDARG00000076391npm2a6938.793Danio_rerio
ENSG00000158806NPM29236.264ENSDARG00000053963npm2b5940.541Danio_rerio
ENSG00000158806NPM29863.033ENSDORG00000012371Npm29166.667Dipodomys_ordii
ENSG00000158806NPM210071.717ENSEASG00005018856NPM210069.792Equus_asinus_asinus
ENSG00000158806NPM210071.717ENSECAG00000024685NPM210068.203Equus_caballus
ENSG00000158806NPM29237.363ENSELUG00000004822npm2b6240.541Esox_lucius
ENSG00000158806NPM29937.755ENSELUG00000017306-8842.017Esox_lucius
ENSG00000158806NPM210074.747ENSFCAG00000045117NPM28870.455Felis_catus
ENSG00000158806NPM29666.316ENSFDAG00000007971NPM29068.605Fukomys_damarensis
ENSG00000158806NPM29548.462ENSGALG00000050870NPM26447.692Gallus_gallus
ENSG00000158806NPM29238.462ENSGALG00000054664-7243.750Gallus_gallus
ENSG00000158806NPM2100100.000ENSGGOG00000007071NPM2100100.000Gorilla_gorilla
ENSG00000158806NPM28769.748ENSHGLG00000006243NPM28865.969Heterocephalus_glaber_female
ENSG00000158806NPM28769.748ENSHGLG00100005664NPM28963.776Heterocephalus_glaber_male
ENSG00000158806NPM28538.261ENSIPUG00000013175npm2b6238.739Ictalurus_punctatus
ENSG00000158806NPM28336.585ENSIPUG00000010101npm2a7140.171Ictalurus_punctatus
ENSG00000158806NPM210068.807ENSSTOG00000013623NPM29369.802Ictidomys_tridecemlineatus
ENSG00000158806NPM210066.204ENSJJAG00000018214Npm28167.614Jaculus_jaculus
ENSG00000158806NPM29345.038ENSLACG00000016196NPM27345.385Latimeria_chalumnae
ENSG00000158806NPM29537.234ENSLOCG00000014878npm2b5943.697Lepisosteus_oculatus
ENSG00000158806NPM210075.758ENSLAFG00000015584NPM210070.046Loxodonta_africana
ENSG00000158806NPM210097.980ENSMFAG00000032098NPM210097.059Macaca_fascicularis
ENSG00000158806NPM210097.980ENSMMUG00000002034NPM210097.059Macaca_mulatta
ENSG00000158806NPM210097.980ENSMNEG00000010994NPM210097.059Macaca_nemestrina
ENSG00000158806NPM210097.980ENSMLEG00000030071NPM210097.059Mandrillus_leucophaeus
ENSG00000158806NPM210068.687ENSMAUG00000004228Npm29268.844Mesocricetus_auratus
ENSG00000158806NPM210080.147ENSMICG00000030722-9980.147Microcebus_murinus
ENSG00000158806NPM29770.677ENSMOCG00000017251Npm29370.056Microtus_ochrogaster
ENSG00000158806NPM29050.769ENSMODG00000009677-9551.613Monodelphis_domestica
ENSG00000158806NPM27543.558ENSMODG00000004175-7741.912Monodelphis_domestica
ENSG00000158806NPM210064.352MGP_CAROLIEiJ_G0019492Npm29262.814Mus_caroli
ENSG00000158806NPM210065.741ENSMUSG00000047911Npm29965.341Mus_musculus
ENSG00000158806NPM210064.352MGP_PahariEiJ_G0030509Npm29264.824Mus_pahari
ENSG00000158806NPM210065.278MGP_SPRETEiJ_G0020384Npm29263.819Mus_spretus
ENSG00000158806NPM210068.687ENSMPUG00000004012NPM210067.873Mustela_putorius_furo
ENSG00000158806NPM29670.526ENSMLUG00000016075NPM28269.186Myotis_lucifugus
ENSG00000158806NPM29872.857ENSNGAG00000022056Npm29272.222Nannospalax_galili
ENSG00000158806NPM210096.324ENSNLEG00000035765NPM210096.324Nomascus_leucogenys
ENSG00000158806NPM210061.616ENSOPRG00000012940NPM210061.860Ochotona_princeps
ENSG00000158806NPM210059.000ENSODEG00000006433NPM28163.483Octodon_degus
ENSG00000158806NPM210049.020ENSOANG00000020262-7954.749Ornithorhynchus_anatinus
ENSG00000158806NPM210073.737ENSOCUG00000021756NPM210064.486Oryctolagus_cuniculus
ENSG00000158806NPM210077.778ENSOGAG00000011562NPM29374.129Otolemur_garnettii
ENSG00000158806NPM2100100.000ENSPPAG00000040749NPM210098.598Pan_paniscus
ENSG00000158806NPM29977.037ENSPPRG00000022157NPM29977.037Panthera_pardus
ENSG00000158806NPM28579.310ENSPTIG00000011553NPM29579.310Panthera_tigris_altaica
ENSG00000158806NPM2100100.000ENSPTRG00000020045NPM210099.265Pan_troglodytes
ENSG00000158806NPM210097.980ENSPANG00000031080NPM210097.059Papio_anubis
ENSG00000158806NPM29640.625ENSPKIG00000009700npm2b5743.103Paramormyrops_kingsleyae
ENSG00000158806NPM29436.719ENSPKIG00000007241npm2a8436.719Paramormyrops_kingsleyae
ENSG00000158806NPM210045.455ENSPSIG00000007722NPM28147.159Pelodiscus_sinensis
ENSG00000158806NPM210063.256ENSPEMG00000013368Npm29264.141Peromyscus_maniculatus_bairdii
ENSG00000158806NPM210042.424ENSPCIG00000012716-5943.750Phascolarctos_cinereus
ENSG00000158806NPM210081.481ENSPPYG00000018408NPM210081.944Pongo_abelii
ENSG00000158806NPM210080.808ENSPCOG00000018483-9981.481Propithecus_coquereli
ENSG00000158806NPM29267.150ENSPVAG00000009848NPM29269.634Pteropus_vampyrus
ENSG00000158806NPM29540.394ENSPNAG00000001303npm2b7641.026Pygocentrus_nattereri
ENSG00000158806NPM27641.748ENSPNAG00000018186npm2a7440.171Pygocentrus_nattereri
ENSG00000158806NPM210062.326ENSRNOG00000025638Npm29262.626Rattus_norvegicus
ENSG00000158806NPM210097.980ENSRBIG00000029235NPM210097.059Rhinopithecus_bieti
ENSG00000158806NPM210098.990ENSRROG00000044119NPM210097.794Rhinopithecus_roxellana
ENSG00000158806NPM210091.919ENSSBOG00000025301NPM29991.852Saimiri_boliviensis_boliviensis
ENSG00000158806NPM29346.739ENSSHAG00000017903-10046.739Sarcophilus_harrisii
ENSG00000158806NPM29438.298ENSSFOG00015010466npm2b7938.356Scleropages_formosus
ENSG00000158806NPM27846.753ENSSPUG00000011509NPM26653.125Sphenodon_punctatus
ENSG00000158806NPM210066.667ENSSSCG00000009610NPM29867.956Sus_scrofa
ENSG00000158806NPM25867.442ENSTTRG00000008050-10068.992Tursiops_truncatus
ENSG00000158806NPM210071.717ENSUAMG00000002809NPM26968.889Ursus_americanus
ENSG00000158806NPM210070.707ENSVVUG00000021949-10066.071Vulpes_vulpes
ENSG00000158806NPM29467.742ENSVVUG00000007256-7865.909Vulpes_vulpes
ENSG00000158806NPM28439.759ENSXETG00000016499-7343.878Xenopus_tropicalis
ENSG00000158806NPM29946.729ENSXETG00000010542npm26948.438Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000789cytoplasmic chromatin12714744.IDAComponent
GO:0000790nuclear chromatin12714744.IDAComponent
GO:0001824blastocyst development12714744.IMPProcess
GO:0003682chromatin binding21873635.IBAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus12714744.IDAComponent
GO:0005654nucleoplasm21873635.IBAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0006338chromatin remodeling21873635.IBAProcess
GO:0006338chromatin remodeling12714744.IDAProcess
GO:0007096regulation of exit from mitosis12714744.IMPProcess
GO:0007338single fertilization12714744.IMPProcess
GO:0009994oocyte differentiation12714744.IEPProcess
GO:0019899enzyme binding-IEAFunction
GO:0042393histone binding21873635.IBAFunction
GO:0042393histone binding12581654.TASFunction
GO:0043085positive regulation of catalytic activity-IEAProcess
GO:0045740positive regulation of DNA replication21873635.IBAProcess
GO:0045836positive regulation of meiotic nuclear division12714744.IMPProcess
GO:0051260protein homooligomerization-IEAProcess
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