EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr689117836Missense_MutationnovelA18S0.42RRM_1
BLCAchr689098714Missense_MutationNAS217F0.49
BLCAchr689098837Missense_MutationnovelS176C0.52
BLCAchr689098797SilentnovelS189S0.36
BRCAchr689098735Nonsense_MutationNAS210*0.16
CESCchr689098628Missense_MutationNAF246V0.26
CESCchr689098661Missense_MutationNAE235K0.45
CESCchr689098732Missense_MutationnovelR211K0.4
CESCchr689105234Missense_Mutationrs781377030R101C0.42
CESCchr6890985733'UTRnovel0.42
CESCchr6891180045'UTRnovel0.43
CESCchr689098831Missense_MutationNAG178E0.68
COADchr6890985543'UTRnovel0.3
COADchr689105173Missense_MutationNAR121Q0.38
COADchr689098612Missense_MutationnovelR251K0.27
COADchr689107243SilentNAR27R0.33
COADchr689098584SilentNAS260S0.38
COADchr689107179Missense_MutationNAR49C0.43RRM_1
COADchr689107230Nonsense_MutationNAR32*0.24RRM_1
COADchr689117830Missense_MutationNAA20T0.44RRM_1
ESCAchr689098712Missense_MutationnovelD218H0.28
GBMchr689098855Missense_MutationNAP170L0.42
GBMchr689098676Missense_MutationnovelG230W0.1
HNSCchr689098803Missense_MutationnovelK187N0.23
KIRCchr6890984763'UTRnovel0.38
KIRPchr6890985093'UTRnovel0.67
LGGchr689098643Missense_MutationNAA241T0.44
LIHCchr689117864SilentNAP8P0.44
LUADchr689098614SilentnovelS250S0.09
LUADchr689098699Missense_MutationnovelR222K0.04
LUSCchr689098696Missense_MutationnovelS223F0.31
LUSCchr6891179055'UTRrs7779231210.21
LUSCchr689107242Missense_MutationnovelR28G0.2RRM_1
OVchr689098726Missense_MutationnovelH213L0.06
PRADchr689105153Missense_MutationnovelG128R0.22
PRADchr689105164Missense_MutationnovelS124N0.65
READchr6891179265'UTRnovel0.42
READchr689105138Missense_MutationnovelR133W0.2
READchr6890985063'UTRnovel0.43
SKCMchr6890985253'UTRnovel0.38
SKCMchr689098606Missense_MutationNAR253Q0.12
SKCMchr689105126Missense_Mutationrs773964959L137F0.28
STADchr689107242Missense_Mutationrs138061111R28C0.46RRM_1
STADchr6890985523'UTRrs7630043360.11
STADchr689098886Missense_Mutationrs757624112R160W0.26
STADchr689105444Missense_MutationnovelA86V0.05
STADchr689107242Missense_Mutationrs138061111R28C0.08RRM_1
THCAchr689098882Missense_MutationNAS161C0.27
UCECchr689105252Nonsense_MutationNAQ95*0.36
UCECchr6890985063'UTRnovel0.41
UCECchr689105517Nonsense_Mutationrs768267669R62*0.35RRM_1
UCECchr689107221Missense_MutationnovelP35S0.15RRM_1
UCECchr689107154Missense_MutationnovelQ57R0.43RRM_1
UCECchr689098934Nonsense_Mutationrs374369058R144*0.41
UCECchr689105219Missense_MutationnovelP106S0.17
UCECchr689098643Missense_MutationNAA241T0.47
UCECchr689107244Missense_Mutationrs370398820R27H0.37RRM_1
UCECchr689098933Missense_Mutationrs780234250R144Q0.36
UCECchr689105517Nonsense_Mutationrs768267669R62*0.32RRM_1
UCECchr689105174Nonsense_MutationnovelR121*0.31
UCECchr6890985063'UTRnovel0.25
UCECchr689098943Nonsense_MutationnovelR141*0.47
UCECchr6890985563'UTRrs3775759360.35
UCECchr689098606Missense_MutationNAR253Q0.19
UCECchr689098892Missense_MutationnovelP158T0.46
UCECchr689098861Missense_MutationnovelR168I0.35
UCECchr689105174Nonsense_MutationnovelR121*0.31
UCECchr689098609Missense_MutationnovelS252Y0.59
UCECchr6890984193'UTRnovel0.38
UCECchr689107229Missense_MutationNAR32Q0.06RRM_1
UCECchr689098933Missense_Mutationrs780234250R144Q0.2
UCECchr689105177Missense_MutationnovelT120A0.19
UCECchr6890985063'UTRnovel0.37
UCECchr689105514Missense_MutationNAD63Y0.28RRM_1
UCECchr689107230Nonsense_MutationNAR32*0.36RRM_1
UCECchr689098829Missense_Mutationrs762879261R179W0.25
UCECchr689098943Nonsense_MutationnovelR141*0.33
UCECchr6890985053'UTRnovel0.53
UCECchr6890984323'UTRnovel0.57

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCADEL0.33823.4915e-05
BRCADEL0.29171.3052e-12
CHOLDEL0.63890.022382
DLBCDEL0.29170.00024438
ESCADEL0.22830.036953
LUADDEL0.4050.0021365
MESODEL0.34480.05642
PAADDEL0.34780.11274
SARCDEL0.23740.0021591
SKCMDEL0.4551.5442e-06
STADDEL0.15420.0044196

Survival Analysis
CancerP-value Q-value
SARC0.018

Kaplan-Meier Survival Analysis

ACC0.045

Kaplan-Meier Survival Analysis

SKCM0.032

Kaplan-Meier Survival Analysis

TGCT0.048

Kaplan-Meier Survival Analysis

KIRP0.034

Kaplan-Meier Survival Analysis

PAAD0.00014

Kaplan-Meier Survival Analysis

BLCA0.034

Kaplan-Meier Survival Analysis

READ0.024

Kaplan-Meier Survival Analysis

LAML0.00011

Kaplan-Meier Survival Analysis

UCEC0.0042

Kaplan-Meier Survival Analysis

LIHC0.007

Kaplan-Meier Survival Analysis

DLBC0.042

Kaplan-Meier Survival Analysis

LGG0.00012

Kaplan-Meier Survival Analysis

OV0.0079

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000154548 (Gene tree)
Gene ID
135295
Gene Symbol
SRSF12
Alias
SRrp35|SFRS19|SFRS13B
Full Name
serine and arginine rich splicing factor 12
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
22,125 bases
Position
chr6:89,095,957-89,118,081
Accession
21220
RBP type
canonical RBP
Summary
(Serine And Arginine Rich Splicing Factor 12) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is SRSF10.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000414302RRM_1PF00076.221.5e-1811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000517387SRSF12-204567-ENSP0000042798241 (aa)-E5RFT0
ENST00000524221SRSF12-205793--- (aa)--
ENST00000475068SRSF12-202758-ENSP0000043051342 (aa)-E5RJS0
ENST00000452027SRSF12-2013599XM_006715348ENSP00000414302261 (aa)XP_006715411Q8WXF0
ENST00000488604SRSF12-203693--- (aa)--
Gene Model
Click here to download ENSG00000154548's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000154548's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000154548SRSF127366.667ENSG00000188529SRSF109085.484
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000154548SRSF127353.333ENSAPOG00000024545-9186.207Acanthochromis_polyacanthus
ENSG00000154548SRSF1210093.511ENSAMEG00000000418SRSF1210093.511Ailuropoda_melanoleuca
ENSG00000154548SRSF127350.000ENSACIG00000001537-8382.759Amphilophus_citrinellus
ENSG00000154548SRSF127353.333ENSACIG00000018697-8586.207Amphilophus_citrinellus
ENSG00000154548SRSF125472.727ENSAPEG00000004873-7083.810Amphiprion_percula
ENSG00000154548SRSF127346.667ENSATEG00000003493-8181.034Anabas_testudineus
ENSG00000154548SRSF1210093.431ENSANAG00000023238SRSF1210093.431Aotus_nancymaae
ENSG00000154548SRSF127353.333ENSAMXG00000031867-8482.759Astyanax_mexicanus
ENSG00000154548SRSF1210098.084ENSBTAG00000046235SRSF1210098.084Bos_taurus
ENSG00000154548SRSF1210098.855ENSCJAG00000038575SRSF1210098.855Callithrix_jacchus
ENSG00000154548SRSF129298.333ENSCAFG00000030745SRSF127598.333Canis_familiaris
ENSG00000154548SRSF1210098.084ENSCAFG00020015999SRSF1210098.084Canis_lupus_dingo
ENSG00000154548SRSF1210096.947ENSCHIG00000014596SRSF1210096.947Capra_hircus
ENSG00000154548SRSF127366.667ENSCHIG00000023999-9085.484Capra_hircus
ENSG00000154548SRSF129296.250ENSTSYG00000001269SRSF129896.250Carlito_syrichta
ENSG00000154548SRSF129792.157ENSCAPG00000001547SRSF1210092.157Cavia_aperea
ENSG00000154548SRSF129296.653ENSCPOG00000010917SRSF1210096.653Cavia_porcellus
ENSG00000154548SRSF12100100.000ENSCCAG00000033029SRSF12100100.000Cebus_capucinus
ENSG00000154548SRSF12100100.000ENSCATG00000030620SRSF12100100.000Cercocebus_atys
ENSG00000154548SRSF129298.326ENSCLAG00000013868SRSF1210098.326Chinchilla_lanigera
ENSG00000154548SRSF1210099.237ENSCSAG00000017325SRSF1210099.237Chlorocebus_sabaeus
ENSG00000154548SRSF127794.089ENSCHOG00000013911SRSF1210094.089Choloepus_hoffmanni
ENSG00000154548SRSF129299.170ENSCANG00000038708SRSF1210099.170Colobus_angolensis_palliatus
ENSG00000154548SRSF129290.795ENSCGRG00000017064Srsf1210090.795Cricetulus_griseus_crigri
ENSG00000154548SRSF127353.333ENSDARG00000112572CR293507.19784.483Danio_rerio
ENSG00000154548SRSF129272.803ENSETEG00000001386SRSF1210072.803Echinops_telfairi
ENSG00000154548SRSF125472.727ENSEBUG00000007679SRSF125075.000Eptatretus_burgeri
ENSG00000154548SRSF1210098.092ENSEASG00005005686SRSF1210098.092Equus_asinus_asinus
ENSG00000154548SRSF1210098.851ENSECAG00000019135SRSF1210098.851Equus_caballus
ENSG00000154548SRSF1210095.420ENSEEUG00000011026SRSF1210095.420Erinaceus_europaeus
ENSG00000154548SRSF1210097.701ENSFCAG00000029256SRSF1210097.701Felis_catus
ENSG00000154548SRSF129298.326ENSFDAG00000003699SRSF1210098.326Fukomys_damarensis
ENSG00000154548SRSF1292100.000ENSGGOG00000024850SRSF1297100.000Gorilla_gorilla
ENSG00000154548SRSF1210097.318ENSHGLG00000001138SRSF1210097.318Heterocephalus_glaber_female
ENSG00000154548SRSF129297.490ENSHGLG00100005391SRSF128297.490Heterocephalus_glaber_male
ENSG00000154548SRSF127346.667ENSHCOG00000008417-6779.310Hippocampus_comes
ENSG00000154548SRSF127353.333ENSIPUG00000023118-6672.464Ictalurus_punctatus
ENSG00000154548SRSF1210097.328ENSSTOG00000007170SRSF1210097.328Ictidomys_tridecemlineatus
ENSG00000154548SRSF127350.000ENSLBEG00000012669-8881.034Labrus_bergylta
ENSG00000154548SRSF129169.231ENSLACG00000004376SRSF128869.231Latimeria_chalumnae
ENSG00000154548SRSF129297.510ENSLAFG00000005458SRSF1210097.510Loxodonta_africana
ENSG00000154548SRSF12100100.000ENSMFAG00000036543SRSF12100100.000Macaca_fascicularis
ENSG00000154548SRSF1210099.237ENSMMUG00000014941SRSF1210099.237Macaca_mulatta
ENSG00000154548SRSF12100100.000ENSMNEG00000030957SRSF12100100.000Macaca_nemestrina
ENSG00000154548SRSF129298.755ENSMLEG00000042204SRSF1210098.755Mandrillus_leucophaeus
ENSG00000154548SRSF127151.724ENSMAMG00000008111-8383.636Mastacembelus_armatus
ENSG00000154548SRSF129790.514ENSMAUG00000017845Srsf129690.083Mesocricetus_auratus
ENSG00000154548SRSF127366.667ENSMAUG00000009812-10076.543Mesocricetus_auratus
ENSG00000154548SRSF1210097.701ENSMICG00000034783SRSF1210097.701Microcebus_murinus
ENSG00000154548SRSF1210091.188ENSMOCG00000006973Srsf1210091.188Microtus_ochrogaster
ENSG00000154548SRSF127350.000ENSMMOG00000013350-8382.759Mola_mola
ENSG00000154548SRSF129482.520ENSMODG00000018282SRSF129882.158Monodelphis_domestica
ENSG00000154548SRSF1210088.889MGP_CAROLIEiJ_G0025873-10088.889Mus_caroli
ENSG00000154548SRSF1210089.655ENSMUSG00000054679Srsf1210089.655Mus_musculus
ENSG00000154548SRSF1210089.655MGP_PahariEiJ_G0023996-10089.655Mus_pahari
ENSG00000154548SRSF1210089.655MGP_SPRETEiJ_G0026822-10089.655Mus_spretus
ENSG00000154548SRSF129295.142ENSMLUG00000001545SRSF1210095.142Myotis_lucifugus
ENSG00000154548SRSF1210091.188ENSNGAG00000019092Srsf129392.975Nannospalax_galili
ENSG00000154548SRSF127353.333ENSNBRG00000010616-8386.207Neolamprologus_brichardi
ENSG00000154548SRSF129299.170ENSNLEG00000032347SRSF1210099.170Nomascus_leucogenys
ENSG00000154548SRSF129292.500ENSOPRG00000016052SRSF1210092.500Ochotona_princeps
ENSG00000154548SRSF1210091.985ENSODEG00000009174-10091.985Octodon_degus
ENSG00000154548SRSF127363.333ENSODEG00000000894-8185.455Octodon_degus
ENSG00000154548SRSF127366.667ENSODEG00000003118-9085.938Octodon_degus
ENSG00000154548SRSF129596.787ENSOCUG00000000945SRSF1210096.787Oryctolagus_cuniculus
ENSG00000154548SRSF129295.000ENSOGAG00000006421SRSF1210095.000Otolemur_garnettii
ENSG00000154548SRSF1210093.130ENSPPAG00000041573SRSF129993.846Pan_paniscus
ENSG00000154548SRSF1210097.701ENSPPRG00000018838SRSF1210097.701Panthera_pardus
ENSG00000154548SRSF12100100.000ENSPTRG00000018415SRSF12100100.000Pan_troglodytes
ENSG00000154548SRSF1210099.237ENSPANG00000016731SRSF1210099.237Papio_anubis
ENSG00000154548SRSF127353.333ENSPKIG00000000613-6584.483Paramormyrops_kingsleyae
ENSG00000154548SRSF126376.923ENSPEMG00000021564-8586.885Peromyscus_maniculatus_bairdii
ENSG00000154548SRSF1210089.272ENSPEMG00000006893Srsf1210089.272Peromyscus_maniculatus_bairdii
ENSG00000154548SRSF1210079.310ENSPCIG00000021713SRSF129683.750Phascolarctos_cinereus
ENSG00000154548SRSF1210096.565ENSPPYG00000016837SRSF1210096.565Pongo_abelii
ENSG00000154548SRSF1210078.244ENSPCAG00000010020SRSF1210078.244Procavia_capensis
ENSG00000154548SRSF1210096.565ENSPCOG00000001227SRSF1210096.565Propithecus_coquereli
ENSG00000154548SRSF129297.500ENSPVAG00000001046SRSF1210097.500Pteropus_vampyrus
ENSG00000154548SRSF127353.333ENSPNAG00000009501-8882.759Pygocentrus_nattereri
ENSG00000154548SRSF1210083.525ENSRNOG00000051383Srsf1210078.544Rattus_norvegicus
ENSG00000154548SRSF1292100.000ENSRBIG00000029756SRSF1297100.000Rhinopithecus_bieti
ENSG00000154548SRSF1299100.000ENSRROG00000035967SRSF12100100.000Rhinopithecus_roxellana
ENSG00000154548SRSF129292.885ENSSBOG00000032399SRSF1210092.885Saimiri_boliviensis_boliviensis
ENSG00000154548SRSF125472.727ENSSLDG00000002710-9382.759Seriola_lalandi_dorsalis
ENSG00000154548SRSF129297.510ENSSARG00000007795SRSF1210097.510Sorex_araneus
ENSG00000154548SRSF129279.079ENSSPUG00000001194SRSF128879.079Sphenodon_punctatus
ENSG00000154548SRSF125682.609ENSSPUG00000016216-9682.812Sphenodon_punctatus
ENSG00000154548SRSF127350.000ENSSPAG00000001821-8382.759Stegastes_partitus
ENSG00000154548SRSF1210098.467ENSSSCG00000032781SRSF1210098.467Sus_scrofa
ENSG00000154548SRSF127350.000ENSTRUG00000019904-7982.759Takifugu_rubripes
ENSG00000154548SRSF129292.887ENSTBEG00000008665-10092.887Tupaia_belangeri
ENSG00000154548SRSF125996.774ENSTBEG00000015120-10096.774Tupaia_belangeri
ENSG00000154548SRSF1210091.985ENSTTRG00000003682SRSF1210091.985Tursiops_truncatus
ENSG00000154548SRSF129890.310ENSUMAG00000010534SRSF129890.310Ursus_maritimus
ENSG00000154548SRSF1210091.603ENSVPAG00000004175SRSF1210091.603Vicugna_pacos
ENSG00000154548SRSF129595.161ENSVVUG00000010197SRSF129995.161Vulpes_vulpes
ENSG00000154548SRSF129971.698ENSXETG00000005385srsf129071.660Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000244spliceosomal tri-snRNP complex assembly11684676.NASProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome11684676.IDAProcess
GO:0000395mRNA 5'-splice site recognition21873635.IBAProcess
GO:0000395mRNA 5'-splice site recognition11684676.IDAProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding11684676.NASFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm11684676.ISSComponent
GO:0016607nuclear speck21873635.IBAComponent
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess
GO:0048025negative regulation of mRNA splicing, via spliceosome11684676.ISSProcess
GO:0050733RS domain binding11684676.NASFunction
GO:0051082unfolded protein binding11684676.NASFunction
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us