EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24002004MSI2 expression is decreased in grade II of gastric carcinoma.Pathol Res Pract2013 NovEmadi-Baygi Mdoi: 10.1016/j.prp.2013.07.008
26673327The Msi Family of RNA-Binding Proteins Function Redundantly as Intestinal Oncoproteins.Cell Rep2015 Dec 22Li Ndoi: 10.1016/j.celrep.2015.11.022
30419948Long non-coding RNA DANCR promotes malignant phenotypes of bladder cancer cells by modulating the miR-149/MSI2 axis as a ceRNA.J Exp Clin Cancer Res2018 Nov 12Zhan Ydoi: 10.1186/s13046-018-0921-1.
26775684Musashi2 as a novel predictive biomarker for liver metastasis and poor prognosis in colorectal cancer.Cancer Med2016 AprZong Zdoi: 10.1002/cam4.624
27600258Musashi-2 is a novel regulator of paclitaxel sensitivity in ovarian cancer cells.Int J Oncol2016 NovLee Jdoi: 10.3892/ijo.2016.3683
27721018Musashi 2 contributes to the stemness and chemoresistance of liver cancer stem cells via LIN28A activation.Cancer Lett2017 Jan 1Fang Tdoi: 10.1016/j.canlet.2016.10.007
27593929Musashi RNA-binding protein 2 regulates estrogen receptor 1 function in breast cancer.Oncogene2017 Mar 23Kang MHdoi: 10.1038/onc.2016.327
27941885DBC2/RhoBTB2 functions as a tumor suppressor protein via Musashi-2 ubiquitination in breast cancer.Oncogene2017 May 18Choi YMdoi: 10.1038/onc.2016.441
27092875Musashi2 promotes the development and progression of pancreatic cancer by down-regulating Numb protein.Oncotarget2017 Feb 28Sheng Wdoi: 10.18632/oncotarget.8736
28143872Musashi RNA-Binding Proteins as Cancer Drivers and Novel Therapeutic Targets.Clin Cancer Res2017 May 1Kudinov AEdoi: 10.1158/1078-0432.CCR-16-2728
30097032Natural product derivative Gossypolone inhibits Musashi family of RNA-binding proteins.BMC Cancer2018 Aug 10Lan Ldoi: 10.1186/s12885-018-4704-z.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1757257064Intronnovel0.08
BLCAchr1757258354Splice_RegionnovelT90T0.25
BLCAchr1757652120Missense_MutationnovelG250E0.41
BLCAchr1757674988SilentnovelR269R0.21
BLCAchr1757262175Missense_MutationNAR99C0.36RRM_1
BLCAchr1757616075Missense_MutationnovelG215R0.4
BLCAchr1757616045Missense_MutationNAY205H0.27
BRCAchr17576770303'UTRnovel0.23
BRCAchr1757596888Missense_MutationnovelE159K0.05
BRCAchr1757257094Splice_RegionNA0.29
BRCAchr1757257490Missense_MutationnovelK43R0.29
CESCchr17576770403'UTRnovel0.42
CESCchr1757262174SilentnovelP98P0.3
CESCchr1757616057Missense_Mutationrs769598215A209T0.38
CESCchr1757675027Silentrs776345010V282V0.33
COADchr1757631904Intronnovel0.42
COADchr1757652138Missense_Mutationrs772529843A256V0.44
COADchr1757616020SilentNAT196T0.38
COADchr1757401423SilentnovelA119A0.08
COADchr1757258273SilentNAG63G0.32
COADchr1757674932Intronnovel0.53
COADchr1757652155Nonsense_MutationNAG262*0.38
COADchr1757257013IntronNA0.41
GBMchr1757257034Intronnovel0.32
GBMchr1757257036Intronnovel0.28
GBMchr1757262183Silentrs574167789A101A0.2
GBMchr1757257495Nonsense_MutationnovelG45*0.49
HNSCchr1757262178Nonsense_MutationNAR100*0.07RRM_1
HNSCchr1757529713Missense_Mutationrs778326895N148S0.29
KIRPchr1757677018Missense_MutationNAG326E0.34
LGGchr1757257469Missense_MutationnovelS36N0.29
LGGchr1757674987Missense_Mutationrs200547992R269Q0.41
LIHCchr1757675081Silentrs376818853S300S0.37
LIHCchr1757631851Intronnovel0.53
LIHCchr1757615993Silentrs145999502P187P0.13
LUADchr1757262170Missense_MutationnovelF97Y0.15RRM_1
LUADchr1757616085Splice_SitenovelX218_splice0.45
LUADchr1757401456Silentrs201726045F130F0.27
LUADchr1757675040Missense_MutationnovelG287C0.17
LUADchr1757631801Intronnovel0.21
LUADchr1757401396Missense_MutationnovelK110N0.08RRM_1
LUADchr1757675050Missense_MutationnovelS290I0.43
LUADchr1757401444SilentNAV126V0.08
LUADchr1757652112Silentrs778007624A247A0.11
LUSCchr1757616030Missense_Mutationrs201389280A200T0.25
LUSCchr1757615981Missense_MutationNAK183N0.49
LUSCchr1757675123SilentnovelI314I0.36
LUSCchr1757401423SilentnovelA119A0.25
OVchr1757616065Frame_Shift_InsnovelL212Cfs*1580.14
OVchr1757257508Missense_MutationnovelE49A0.1
OVchr1757257489Missense_MutationnovelK43Q0.09
OVchr1757257479SilentnovelD39D0.09
PAADchr1757258304Missense_MutationnovelS74G0.18RRM_1
PRADchr1757262183Silentrs574167789A101A0.08
PRADchr1757675061Missense_Mutationrs757898294G294R0.43
READchr1757262179Missense_MutationNAR100Q0.4RRM_1
SARCchr1757627228Splice_SitenovelX218_splice0.76
SARCchr1757627229Missense_MutationnovelG218E0.79
SKCMchr1757401456Silentrs201726045F130F0.41
SKCMchr1757627257SilentNAG227G0.26
SKCMchr1757674973Splice_RegionnovelG264G0.3
SKCMchr1757257018Intronnovel0.42
SKCMchr1757674968Splice_Regionnovel0.37
SKCMchr1757258271Missense_MutationNAG63S0.33RRM_1
SKCMchr1757401456Silentrs201726045F130F0.15
SKCMchr1757675002Missense_Mutationrs745388891P274L0.55
SKCMchr1757675016Missense_MutationnovelP279S0.31
SKCMchr1757675017Missense_MutationnovelP279L0.31
SKCMchr1757652104Missense_MutationNAP245S0.33
SKCMchr1757401396SilentNAK110K0.48
SKCMchr1757529703Missense_MutationnovelK145E0.29
STADchr1757631843Intronnovel0.25
STADchr1757675070Missense_MutationNAN297D0.29
STADchr1757257046Intronnovel0.11
STADchr1757401412Missense_Mutationrs369720643G116R0.3RRM_1
STADchr1757674966Splice_Regionrs7588347260.3
UCECchr1757262182Missense_Mutationrs772710603A101V0.51RRM_1
UCECchr1757616057Missense_Mutationrs769598215A209T0.16
UCECchr1757401423SilentnovelA119A0.07
UCECchr1757257492Missense_MutationnovelF44L0.21
UCECchr1757257094Splice_Regionnovel0.72
UCECchr1757675083Missense_MutationNAA301V0.39
UCECchr1757675117Silentrs536631751H312H0.46
UCECchr1757631791Intronnovel0.16
UCECchr1757632172Intronnovel0.3
UCECchr1757632019Intronnovel0.31
UCECchr1757627242Silentrs549686242F222F0.28
UCECchr1757631986Intronnovel0.29
UCECchr1757632054Intronnovel0.25
UCECchr1757258327Missense_MutationnovelQ81H0.19RRM_1
UCECchr1757632019Intronnovel0.33
UCECchr1757675031Missense_Mutationrs766409125D284N0.44
UCECchr1757674987Missense_Mutationrs200547992R269Q0.3
UCECchr17576795793'UTRnovel0.26
UCECchr1757632019Intronnovel0.46
UCECchr1757632019Intronnovel0.5
UCECchr17576797053'UTRrs5350210110.39
UCECchr1757627242Silentrs549686242F222F0.41
UCECchr1757631986Intronnovel0.59
UCECchr1757632019Intronnovel0.49
UCECchr1757257507Nonsense_MutationnovelE49*0.38
UCECchr1757631874Intronnovel0.38
UCECchr1757652142SilentnovelV257V0.46
UCECchr1757632128Intronnovel0.1
UCECchr17576795793'UTRnovel0.09
UCECchr1757401423SilentnovelA119A0.51
UCECchr1757675125Missense_MutationnovelA315D0.08
UCECchr1757632019Intronnovel0.4
UCECchr17576797613'UTRnovel0.33
UCECchr1757632019Intronnovel0.32
UCECchr1757631827Intronnovel0.38
UCECchr1757652144Missense_MutationNAA258V0.6
UCECchr1757401423SilentnovelA119A0.37
UCECchr1757674956Intronnovel0.39
UCSchr1757401396Missense_MutationnovelK110N0.35RRM_1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.04170.18166
KIRPAMP0.66320.14801
READAMP0.16970.15915
THCADEL0.0020.221
UVMAMP0.16250.054583

Survival Analysis
CancerP-value Q-value
KIRC0.0049

Kaplan-Meier Survival Analysis

STAD0.00031

Kaplan-Meier Survival Analysis

ACC0.041

Kaplan-Meier Survival Analysis

KIRP0.031

Kaplan-Meier Survival Analysis

COAD0.035

Kaplan-Meier Survival Analysis

PCPG0.025

Kaplan-Meier Survival Analysis

BLCA0.0026

Kaplan-Meier Survival Analysis

READ0.023

Kaplan-Meier Survival Analysis

LIHC0.04

Kaplan-Meier Survival Analysis

UVM0.023

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000153944 (Gene tree)
Gene ID
124540
Gene Symbol
MSI2
Alias
N
Full Name
musashi RNA binding protein 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
444,627 bases
Position
chr17:57,255,851-57,700,477
Accession
18585
RBP type
canonical RBP
Summary
This gene encodes an RNA-binding protein that is a member of the Musashi protein family. The encoded protein is transcriptional regulator that targets genes involved in development and cell cycle regulation. Mutations in this gene are associated with poor prognosis in certain types of cancers. This gene has also been shown to be rearranged in certain cancer cells. [provided by RefSeq, Apr 2016]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000313616RRM_1PF00076.225.7e-3412
ENSP00000313616RRM_1PF00076.225.7e-3422
ENSP00000414671RRM_1PF00076.221.1e-3312
ENSP00000414671RRM_1PF00076.221.1e-3322
ENSP00000284073RRM_1PF00076.221.3e-3312
ENSP00000284073RRM_1PF00076.221.3e-3322
ENSP00000462914RRM_1PF00076.221.5e-2211
ENSP00000462264RRM_1PF00076.221.4e-1411
ENSP00000392607RRM_1PF00076.223.9e-1411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
31059735Musashi-2 and related stem cell proteins in the mouse suprachiasmatic nucleus and their potential role in circadian rhythms.Int J Dev Neurosci2019 JunBeligala DHdoi: 10.1016/j.ijdevneu.2019.04.007
12649177A novel gene, MSI2, encoding a putative RNA-binding protein is recurrently rearranged at disease progression of chronic myeloid leukemia and forms a fusion gene with HOXA9 as a result of the cryptic t(7;17)(p15;q23).Cancer Res2003 Mar 15Barbouti A-
25621121Regulated genes in mesenchymal stem cells and gastric cancer.World J Stem Cells2015 Jan 26Tanabe Sdoi: 10.4252/wjsc.v7.i1.208.
23943854Systems genetics of hepatocellular damage in vivo and in vitro: identification of a critical network on chromosome 11 in mouse.Physiol Genomics2013 Oct 16Liebe Rdoi: 10.1152/physiolgenomics.00078.2013
23667531The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells.PLoS One2013 May 7Cox JLdoi: 10.1371/journal.pone.0062857
27593929Musashi RNA-binding protein 2 regulates estrogen receptor 1 function in breast cancer.Oncogene2017 Mar 23Kang MHdoi: 10.1038/onc.2016.327
29073938Musashi-2, a novel oncoprotein promoting cervical cancer cell growth and invasion, is negatively regulated by p53-induced miR-143 and miR-107 activation.J Exp Clin Cancer Res2017 Oct 26Dong Pdoi: 10.1186/s13046-017-0617-y.
30126842Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling.J Biol Chem2018 Oct 5Duggimpudi Sdoi: 10.1074/jbc.RA118.002243
30718918Correction: Musashi RNA-binding protein 2 regulates estrogen receptor 1 function in breast cancer.Oncogene2019 MayKang MHdoi: 10.1038/s41388-019-0721-x.
29290973Human oncoprotein Musashi-2 N-terminal RNA recognition motif backbone assignment and identification of RNA-binding pocket.Oncotarget2017 Nov 20Lan Ldoi: 10.18632/oncotarget.22540
23776146Specificity factors in cytoplasmic polyadenylation.Wiley Interdiscip Rev RNA2013 Jul-AugCharlesworth Adoi: 10.1002/wrna.1171.
31066120MicroRNA-143/Musashi-2/KRAS cascade contributes positively to carcinogenesis in human bladder cancer.Cancer Sci2019 JulTsujino Tdoi: 10.1111/cas.14035
11588182Rna-binding protein Musashi2: developmentally regulated expression in neural precursor cells and subpopulations of neurons in mammalian CNS.J Neurosci2001 Oct 15Sakakibara S-
10657706Musashi1: an evolutionally conserved marker for CNS progenitor cells including neural stem cells.Dev Neurosci2000Kaneko Y-
22496868Musashi2 is required for the self-renewal and pluripotency of embryonic stem cells.PLoS One2012Wuebben ELdoi: 10.1371/journal.pone.0034827
21766416Translational control in germ cell development: A role for the RNA-binding proteins Musashi-1 and Musashi-2.IUBMB Life2011 SepGunter KMdoi: 10.1002/iub.499
21613258Musashi 2 is a regulator of the HSC compartment identified by a retroviral insertion screen and knockout mice.Blood2011 Jul 21de Andres-Aguayo Ldoi: 10.1182/blood-2010-12-322081
23209605Drosophila Rbp6 is an orthologue of vertebrate Msi-1 and Msi-2, but does not function redundantly with dMsi to regulate germline stem cell behaviour.PLoS One2012Siddall NAdoi: 10.1371/journal.pone.0049810
20639863Regulation of myeloid leukaemia by the cell-fate determinant Musashi.Nature2010 Aug 5Ito Tdoi: 10.1038/nature09171
28107692RNA binding protein MSI2 positively regulates FLT3 expression in myeloid leukemia.Leuk Res2017 MarHattori Adoi: 10.1016/j.leukres.2017.01.015
24671879Developmental expression of Musashi-1 and Musashi-2 RNA-binding proteins during spermatogenesis: analysis of the deleterious effects of dysregulated expression.Biol Reprod2014 May 1Sutherland JMdoi: 10.1095/biolreprod.113.115261
24395885Musashi-2 controls cell fate, lineage bias, and TGF-β signaling in HSCs.J Exp Med2014 Jan 13Park SMdoi: 10.1084/jem.20130736
24076374Musashi2 modulates K562 leukemic cell proliferation and apoptosis involving the MAPK pathway.Exp Cell Res2014 Jan 1Zhang Hdoi: 10.1016/j.yexcr.2013.09.009
24002004MSI2 expression is decreased in grade II of gastric carcinoma.Pathol Res Pract2013 NovEmadi-Baygi Mdoi: 10.1016/j.prp.2013.07.008
25664853Musashi2 sustains the mixed-lineage leukemia-driven stem cell regulatory program.J Clin Invest2015 Mar 2Park SMdoi: 10.1172/JCI78440
27034466Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration.Nucleic Acids Res2016 May 5Bennett CGdoi: 10.1093/nar/gkw207
27441652RNA-binding protein Musashi2 induced by RANKL is critical for osteoclast survival.Cell Death Dis2016 Jul 21Fujiwara Tdoi: 10.1038/cddis.2016.213.
27454802Human umbilical cord blood hematopoietic stem cell expansion by the RNA-binding protein Musashi-2.Oral Dis2017 JulTran SDdoi: 10.1111/odi.12548
27121842Musashi-2 attenuates AHR signalling to expand human haematopoietic stem cells.Nature2016 Apr 28Rentas Sdoi: 10.1038/nature17665.
26898884MSI2 is required for maintaining activated myelodysplastic syndrome stem cells.Nat Commun2016 Feb 22Taggart Jdoi: 10.1038/ncomms10739.
26308531Musashi-2 Silencing Exerts Potent Activity against Acute Myeloid Leukemia and Enhances Chemosensitivity to Daunorubicin.PLoS One2015 Aug 26Han Ydoi: 10.1371/journal.pone.0136484
26212080Tetraspanin 3 Is Required for the Development and Propagation of Acute Myelogenous Leukemia.Cell Stem Cell2015 Aug 6Kwon HYdoi: 10.1016/j.stem.2015.06.006
26131972Knockout of RNA Binding Protein MSI2 Impairs Follicle Development in the Mouse Ovary: Characterization of MSI1 and MSI2 during Folliculogenesis.Biomolecules2015 Jun 26Sutherland JMdoi: 10.3390/biom5031228.
25774828Transformation of the intestinal epithelium by the MSI2 RNA-binding protein.Nat Commun2015 Mar 16Wang Sdoi: 10.1038/ncomms7517.
25782991RNA binding protein Musashi-1 directly targets Msi2 and Erh during early testis germ cell development and interacts with IPO5 upon translocation to the nucleus.FASEB J2015 JulSutherland JMdoi: 10.1096/fj.14-265868
28143872Musashi RNA-Binding Proteins as Cancer Drivers and Novel Therapeutic Targets.Clin Cancer Res2017 May 1Kudinov AEdoi: 10.1158/1078-0432.CCR-16-2728
28514443Cancer progression by reprogrammed BCAA metabolism in myeloid leukaemia.Nature2017 May 25Hattori Adoi: 10.1038/nature22314
28884822RNA binding protein Musashi-2 regulates PIWIL1 and TBX1 in mouse spermatogenesis.J Cell Physiol2018 AprSutherland JMdoi: 10.1002/jcp.26168
29115587Anticancer effect of quinacrine on diffuse large Bcell lymphoma via inhibition of MSI2NUMB signaling pathway.Mol Med Rep2018 JanYang Sdoi: 10.3892/mmr.2017.7892
29556294Musashi-2 is a prognostic marker for the survival of patients with cervical cancer.Oncol Lett2018 AprLiu Ydoi: 10.3892/ol.2018.8077
29676650The Pluripotency Factor Musashi-2 Is a Novel Target for Lung Cancer Therapy.Ann Am Thorac Soc2018 AprZhang MRdoi: 10.1513/AnnalsATS.201707-608MG.
30034243MSI2 knockdown represses extrahepatic cholangiocarcinoma growth and invasion by inhibiting epithelial-mesenchymal transition.Onco Targets Ther2018 Jul 13Hu Fdoi: 10.2147/OTT.S170739
30419948Long non-coding RNA DANCR promotes malignant phenotypes of bladder cancer cells by modulating the miR-149/MSI2 axis as a ceRNA.J Exp Clin Cancer Res2018 Nov 12Zhan Ydoi: 10.1186/s13046-018-0921-1.
31217428Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia.Nat Commun2019 Jun 19Minuesa Gdoi: 10.1038/s41467-019-10523-3.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000579505MSI2-210577--- (aa)--
ENST00000584476MSI2-219465--- (aa)--
ENST00000442934MSI2-2041624XM_011524286ENSP00000392607267 (aa)XP_011522588B4DM51
ENST00000583821MSI2-218548--- (aa)--
ENST00000579483MSI2-2095141--- (aa)--
ENST00000322684MSI2-2021860-ENSP00000313616251 (aa)-Q96DH6
ENST00000579531MSI2-211472--- (aa)--
ENST00000284073MSI2-2016364XM_005257014ENSP00000284073328 (aa)XP_005257071Q96DH6
ENST00000579466MSI2-208186--- (aa)--
ENST00000577241MSI2-205710--- (aa)--
ENST00000581776MSI2-214493-ENSP0000046322799 (aa)-J3QKT5
ENST00000416426MSI2-2031714-ENSP00000414671324 (aa)-B4DHE8
ENST00000583705MSI2-2177612--- (aa)--
ENST00000582772MSI2-216398--- (aa)--
ENST00000579180MSI2-2061635-ENSP00000462264151 (aa)-Q96DH6
ENST00000582453MSI2-215496--- (aa)--
ENST00000581523MSI2-213534--- (aa)--
ENST00000579590MSI2-212452-ENSP00000462914140 (aa)-J3KTC1
ENST00000579205MSI2-207500--- (aa)--
Gene Model
Click here to download ENSG00000153944's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000153944Iron8.946e-005-
ENSG00000153944Electrocardiography1.111e-005-
ENSG00000153944Arteries9.3240000E-005-
ENSG00000153944Arteries5.3060000E-005-
ENSG00000153944Arteries5.6520000E-005-
ENSG00000153944Arteries4.5840000E-005-
ENSG00000153944Potassium3.7770000E-005-
ENSG00000153944Platelet Function Tests5.8976601E-006-
ENSG00000153944Platelet Function Tests1.6541500E-005-
ENSG00000153944Platelet Function Tests1.4219000E-005-
ENSG00000153944Platelet Function Tests8.3463000E-006-
ENSG00000153944Child Development Disorders, Pervasive3.0537600E-005-
ENSG00000153944Child Development Disorders, Pervasive5.4000000E-005-
ENSG00000153944Schizophrenia2E-626198764
ENSG00000153944Vascular Calcification8E-623870195
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000153944rs1887614581757385980TMean platelet volume27863252[0.047-0.08] unit decrease0.06372918EFO_0004584
ENSG00000153944rs129380781757665916ASchizophrenia26198764[NR]1.07EFO_0000692
ENSG00000153944rs110793211757670055ACoronary artery calcification23870195[0.082-0.238] unit decrease0.16EFO_0004723
ENSG00000153944rs350654791757659374ASchizophrenia28991256[1.04-1.09]1.066EFO_0000692
ENSG00000153944rs1169508631757370570?Tonsillectomy28928442[0.09-0.229] unit decrease0.1592EFO_0007924
ENSG00000153944rs169585591757581872TEducational attainment (MTAG)30038396[0.0072-0.0134] unit increase0.0103EFO_0004784
ENSG00000153944rs169585591757581872THighest math class taken (MTAG)30038396[0.0081-0.0159] unit increase0.012EFO_0004875
ENSG00000153944rs169585591757581872TCognitive performance (MTAG)30038396[0.01-0.021] unit increase0.0157EFO_0008354
ENSG00000153944rs1887614581757385980TPlateletcrit27863252[0.074-0.108] unit decrease0.09090811EFO_0007985
ENSG00000153944rs169585591757581872TEducational attainment (years of education)30038396[0.0063-0.0129] unit increase0.0096EFO_0004784
ENSG00000153944rs743648221757596496TMale-pattern baldness30573740[0.023-0.049] unit decrease0.036037EFO_0007825
ENSG00000153944rs18151981757283224?Age at menopause30595370EFO_0004704
ENSG00000153944rs620580231757259530?Body mass index30595370EFO_0004340
ENSG00000153944rs25862221757470334?Body mass index30595370EFO_0004340
ENSG00000153944rs728330961757578571CEducational attainment (years of education)30038396[0.0072-0.015] unit decrease0.0111EFO_0004784
ENSG00000153944rs800936871757386496?White blood cell count30595370EFO_0004308
ENSG00000153944rs123257021757369003APulse pressure30224653[0.1-0.17] unit increase0.1374EFO_0005763
ENSG00000153944rs1458216411757507204ARapid automised naming of pictures30741946[0.22-0.56] unit decrease0.393031EFO_0005301
ENSG00000153944rs1504976061757389065?Eosinophil counts30595370EFO_0004842
ENSG00000153944rs350654791757659374ASchizophrenia30285260[1.03-1.08]1.054EFO_0000692
ENSG00000153944rs169585591757581872GSmoking initiation (ever regular vs never regular) (MTAG)30643251[0.0047-0.0099] unit increase0.0073063EFO_0006527
ENSG00000153944rs80720581757656837TChronotype306968231.0284985EFO_0008328
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000153944's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000153944MSI28750.000ENSG00000135486HNRNPA110044.828
ENSG00000153944MSI28853.488ENSG00000138668HNRNPD10054.783
ENSG00000153944MSI27740.260ENSG00000213516RBMXL17137.838
ENSG00000153944MSI28246.154ENSG00000139675HNRNPA1L26141.758
ENSG00000153944MSI26145.000ENSG00000234414RBMY1A16550.000
ENSG00000153944MSI28689.394ENSG00000135097MSI19973.840
ENSG00000153944MSI28235.484ENSG00000101489CELF47041.667
ENSG00000153944MSI29139.286ENSG00000132819RBM388142.373
ENSG00000153944MSI26232.895ENSG00000119705SLIRP8434.375
ENSG00000153944MSI29750.526ENSG00000197451HNRNPAB7843.231
ENSG00000153944MSI26145.000ENSG00000242389RBMY1E6550.000
ENSG00000153944MSI27443.243ENSG00000147274RBMX7150.909
ENSG00000153944MSI28438.333ENSG00000131051RBM396438.983
ENSG00000153944MSI28236.667ENSG00000100461RBM239633.333
ENSG00000153944MSI28831.507ENSG00000120948TARDBP9231.507
ENSG00000153944MSI26145.000ENSG00000242875RBMY1B6550.000
ENSG00000153944MSI27542.667ENSG00000102317RBM38942.857
ENSG00000153944MSI28348.052ENSG00000071626DAZAP15041.071
ENSG00000153944MSI26145.000ENSG00000244395RBMY1D6550.000
ENSG00000153944MSI26734.118ENSG00000090621PABPC46834.118
ENSG00000153944MSI28148.750ENSG00000170144HNRNPA36940.756
ENSG00000153944MSI27544.000ENSG00000099622CIRBP10047.368
ENSG00000153944MSI27750.000ENSG00000122566HNRNPA2B18437.963
ENSG00000153944MSI28541.322ENSG00000177733HNRNPA07341.880
ENSG00000153944MSI29353.191ENSG00000152795HNRNPDL8540.769
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000153944MSI29793.227ENSAPOG00000001658msi2a10088.110Acanthochromis_polyacanthus
ENSG00000153944MSI2100100.000ENSAMEG00000002697MSI299100.000Ailuropoda_melanoleuca
ENSG00000153944MSI29392.143ENSACIG00000009475msi2a9775.749Amphilophus_citrinellus
ENSG00000153944MSI27988.288ENSAOCG00000014822msi2a6976.667Amphiprion_ocellaris
ENSG00000153944MSI210088.615ENSAPEG00000007706msi2a10088.110Amphiprion_percula
ENSG00000153944MSI29793.227ENSATEG00000010498msi2a10088.110Anabas_testudineus
ENSG00000153944MSI210087.500ENSATEG00000003301-10093.165Anabas_testudineus
ENSG00000153944MSI29497.887ENSACAG00000005452MSI27495.455Anolis_carolinensis
ENSG00000153944MSI2100100.000ENSANAG00000037827MSI2100100.000Aotus_nancymaae
ENSG00000153944MSI29792.829ENSACLG00000007752msi2a10087.805Astatotilapia_calliptera
ENSG00000153944MSI210093.617ENSAMXG00000032796msi2a10091.793Astyanax_mexicanus
ENSG00000153944MSI29695.000ENSAMXG00000010474msi2b9794.667Astyanax_mexicanus
ENSG00000153944MSI29798.354ENSBTAG00000004406MSI29899.111Bos_taurus
ENSG00000153944MSI28671.304WBGene00003423msi-17660.643Caenorhabditis_elegans
ENSG00000153944MSI2100100.000ENSCJAG00000013998MSI2100100.000Callithrix_jacchus
ENSG00000153944MSI210099.338ENSCAFG00020025620MSI28198.746Canis_lupus_dingo
ENSG00000153944MSI210098.476ENSCHIG00000016580MSI210098.476Capra_hircus
ENSG00000153944MSI29398.571ENSCPOG00000034042MSI29995.390Cavia_porcellus
ENSG00000153944MSI2100100.000ENSCCAG00000033927MSI2100100.000Cebus_capucinus
ENSG00000153944MSI210099.602ENSCATG00000040879MSI210099.602Cercocebus_atys
ENSG00000153944MSI2100100.000ENSCLAG00000014325MSI210094.798Chinchilla_lanigera
ENSG00000153944MSI2100100.000ENSCSAG00000005633MSI2100100.000Chlorocebus_sabaeus
ENSG00000153944MSI276100.000ENSCHOG00000008660MSI283100.000Choloepus_hoffmanni
ENSG00000153944MSI210093.688ENSCPBG00000009942MSI29693.688Chrysemys_picta_bellii
ENSG00000153944MSI28572.222ENSCING00000018579-9952.838Ciona_intestinalis
ENSG00000153944MSI29466.129ENSCSAVG00000010397-7565.772Ciona_savignyi
ENSG00000153944MSI2100100.000ENSCANG00000036414MSI2100100.000Colobus_angolensis_palliatus
ENSG00000153944MSI210099.392ENSCGRG00001013330Msi210099.392Cricetulus_griseus_chok1gshd
ENSG00000153944MSI210099.692ENSCGRG00000003141Msi210099.692Cricetulus_griseus_crigri
ENSG00000153944MSI210079.878ENSCSEG00000003266-10079.878Cynoglossus_semilaevis
ENSG00000153944MSI29287.912ENSCSEG00000013549msi2a10073.913Cynoglossus_semilaevis
ENSG00000153944MSI28469.340ENSCSEG00000013557msi2a8374.227Cynoglossus_semilaevis
ENSG00000153944MSI210088.308ENSCVAG00000017075msi2a10087.320Cyprinodon_variegatus
ENSG00000153944MSI29392.857ENSDARG00000033901msi2a10077.320Danio_rerio
ENSG00000153944MSI29395.714ENSDARG00000032614msi2b100100.000Danio_rerio
ENSG00000153944MSI210094.118ENSDNOG00000014501MSI2100100.000Dasypus_novemcinctus
ENSG00000153944MSI281100.000ENSDORG00000028440-100100.000Dipodomys_ordii
ENSG00000153944MSI27888.832ENSDORG00000005394Msi28487.817Dipodomys_ordii
ENSG00000153944MSI28681.250FBgn0260943Rbp68868.750Drosophila_melanogaster
ENSG00000153944MSI28697.826ENSETEG00000012450-6476.316Echinops_telfairi
ENSG00000153944MSI29476.923ENSEBUG00000006732msi2a8768.489Eptatretus_burgeri
ENSG00000153944MSI2100100.000ENSEASG00005002965MSI29789.112Equus_asinus_asinus
ENSG00000153944MSI210097.289ENSECAG00000011435MSI210092.373Equus_caballus
ENSG00000153944MSI27298.165ENSEEUG00000007810MSI210085.375Erinaceus_europaeus
ENSG00000153944MSI29694.167ENSELUG00000011747msi2a10089.329Esox_lucius
ENSG00000153944MSI210092.332ENSELUG00000001361msi2b9392.332Esox_lucius
ENSG00000153944MSI2100100.000ENSFCAG00000041686MSI2100100.000Felis_catus
ENSG00000153944MSI28686.364ENSFCAG00000033787-8280.128Felis_catus
ENSG00000153944MSI2100100.000ENSFDAG00000016118MSI2100100.000Fukomys_damarensis
ENSG00000153944MSI29793.227ENSFHEG00000000084msi2a9693.421Fundulus_heteroclitus
ENSG00000153944MSI29291.209ENSGMOG00000007596-10093.269Gadus_morhua
ENSG00000153944MSI210098.457ENSGALG00000005567MSI29498.457Gallus_gallus
ENSG00000153944MSI28696.522ENSGAFG00000006974msi2a9094.040Gambusia_affinis
ENSG00000153944MSI210096.053ENSGAGG00000016542MSI210096.053Gopherus_agassizii
ENSG00000153944MSI2100100.000ENSGGOG00000013182MSI2100100.000Gorilla_gorilla
ENSG00000153944MSI29792.829ENSHBUG00000020800msi2a10087.805Haplochromis_burtoni
ENSG00000153944MSI29698.901ENSHGLG00000012444MSI210085.838Heterocephalus_glaber_female
ENSG00000153944MSI283100.000ENSHGLG00100004028-89100.000Heterocephalus_glaber_male
ENSG00000153944MSI281100.000ENSHGLG00100003744MSI2100100.000Heterocephalus_glaber_male
ENSG00000153944MSI29387.857ENSHCOG00000017241-7187.678Hippocampus_comes
ENSG00000153944MSI29792.829ENSHCOG00000000266msi2a9784.911Hippocampus_comes
ENSG00000153944MSI29694.603ENSIPUG00000003732msi2b9393.886Ictalurus_punctatus
ENSG00000153944MSI29593.852ENSIPUG00000021097msi2a10087.195Ictalurus_punctatus
ENSG00000153944MSI29398.571ENSSTOG00000007884MSI29995.390Ictidomys_tridecemlineatus
ENSG00000153944MSI281100.000ENSJJAG00000009467-100100.000Jaculus_jaculus
ENSG00000153944MSI28188.889ENSJJAG00000006292-10088.406Jaculus_jaculus
ENSG00000153944MSI29691.429ENSKMAG00000009494msi2a9691.720Kryptolebias_marmoratus
ENSG00000153944MSI29584.028ENSLBEG00000026223-10068.915Labrus_bergylta
ENSG00000153944MSI29793.227ENSLBEG00000007061msi2a10088.110Labrus_bergylta
ENSG00000153944MSI29194.444ENSLACG00000016798MSI210097.030Latimeria_chalumnae
ENSG00000153944MSI29395.714ENSLOCG00000004675msi2b10084.553Lepisosteus_oculatus
ENSG00000153944MSI2100100.000ENSMFAG00000003775MSI2100100.000Macaca_fascicularis
ENSG00000153944MSI2100100.000ENSMMUG00000002069MSI2100100.000Macaca_mulatta
ENSG00000153944MSI2100100.000ENSMNEG00000045275MSI2100100.000Macaca_nemestrina
ENSG00000153944MSI2100100.000ENSMLEG00000033888MSI2100100.000Mandrillus_leucophaeus
ENSG00000153944MSI29792.829ENSMAMG00000002488-9992.715Mastacembelus_armatus
ENSG00000153944MSI29793.227ENSMAMG00000010503msi2a10086.585Mastacembelus_armatus
ENSG00000153944MSI210092.378ENSMZEG00005007676msi2a10092.378Maylandia_zebra
ENSG00000153944MSI210099.692ENSMAUG00000003862Msi210094.236Mesocricetus_auratus
ENSG00000153944MSI2100100.000ENSMICG00000013598-100100.000Microcebus_murinus
ENSG00000153944MSI29687.778ENSMICG00000032913-10079.580Microcebus_murinus
ENSG00000153944MSI2100100.000ENSMOCG00000005820Msi210094.509Microtus_ochrogaster
ENSG00000153944MSI29988.889ENSMMOG00000008348msi2a9184.858Mola_mola
ENSG00000153944MSI28198.551ENSMODG00000014790MSI210098.551Monodelphis_domestica
ENSG00000153944MSI210088.615ENSMALG00000000071msi2a10093.464Monopterus_albus
ENSG00000153944MSI2100100.000MGP_CAROLIEiJ_G0016948Msi2100100.000Mus_caroli
ENSG00000153944MSI2100100.000ENSMUSG00000069769Msi2100100.000Mus_musculus
ENSG00000153944MSI2100100.000MGP_PahariEiJ_G0018079Msi2100100.000Mus_pahari
ENSG00000153944MSI2100100.000MGP_SPRETEiJ_G0017795Msi2100100.000Mus_spretus
ENSG00000153944MSI29699.167ENSMPUG00000015377MSI29899.556Mustela_putorius_furo
ENSG00000153944MSI29698.333ENSMLUG00000007865MSI29899.556Myotis_lucifugus
ENSG00000153944MSI2100100.000ENSNGAG00000017807Msi210094.509Nannospalax_galili
ENSG00000153944MSI210087.805ENSNBRG00000014596msi2a10087.805Neolamprologus_brichardi
ENSG00000153944MSI2100100.000ENSNLEG00000008059MSI2100100.000Nomascus_leucogenys
ENSG00000153944MSI28697.872ENSOPRG00000000872-6488.816Ochotona_princeps
ENSG00000153944MSI2100100.000ENSODEG00000011974MSI210094.798Octodon_degus
ENSG00000153944MSI28696.522ENSONIG00000001972msi2a8494.040Oreochromis_niloticus
ENSG00000153944MSI29599.099ENSOANG00000005667MSI27499.099Ornithorhynchus_anatinus
ENSG00000153944MSI29698.750ENSOCUG00000010440MSI29999.556Oryctolagus_cuniculus
ENSG00000153944MSI29692.381ENSORLG00000009671msi2a9592.675Oryzias_latipes
ENSG00000153944MSI29793.227ENSORLG00020021556msi2a10086.585Oryzias_latipes_hni
ENSG00000153944MSI29692.381ENSORLG00015004592msi2a9592.675Oryzias_latipes_hsok
ENSG00000153944MSI210086.585ENSOMEG00000000146msi2a9891.694Oryzias_melastigma
ENSG00000153944MSI210090.123ENSOGAG00000005621MSI29995.440Otolemur_garnettii
ENSG00000153944MSI2100100.000ENSPPAG00000037697MSI2100100.000Pan_paniscus
ENSG00000153944MSI210099.602ENSPPRG00000001848MSI210099.602Panthera_pardus
ENSG00000153944MSI2100100.000ENSPTIG00000021678MSI296100.000Panthera_tigris_altaica
ENSG00000153944MSI210086.538ENSPTIG00000021873-9977.559Panthera_tigris_altaica
ENSG00000153944MSI2100100.000ENSPTRG00000009437MSI2100100.000Pan_troglodytes
ENSG00000153944MSI2100100.000ENSPANG00000022319MSI2100100.000Papio_anubis
ENSG00000153944MSI210085.859ENSPKIG00000017107-8885.859Paramormyrops_kingsleyae
ENSG00000153944MSI29691.209ENSPKIG00000007038-9686.061Paramormyrops_kingsleyae
ENSG00000153944MSI210098.106ENSPSIG00000008618MSI28398.106Pelodiscus_sinensis
ENSG00000153944MSI210087.500ENSPMGG00000005888msi2a10087.500Periophthalmus_magnuspinnatus
ENSG00000153944MSI281100.000ENSPEMG00000021793-100100.000Peromyscus_maniculatus_bairdii
ENSG00000153944MSI210098.408ENSPCIG00000006063MSI210090.395Phascolarctos_cinereus
ENSG00000153944MSI29290.110ENSPFOG00000019337MSI29291.429Poecilia_formosa
ENSG00000153944MSI210082.828ENSPLAG00000000436msi2a7690.845Poecilia_latipinna
ENSG00000153944MSI27988.288ENSPMEG00000013247msi2a62100.000Poecilia_mexicana
ENSG00000153944MSI29793.227ENSPREG00000000881msi2a9985.671Poecilia_reticulata
ENSG00000153944MSI29496.639ENSPPYG00000008244-10096.639Pongo_abelii
ENSG00000153944MSI27279.793ENSPCAG00000010552MSI210070.588Procavia_capensis
ENSG00000153944MSI294100.000ENSPCOG00000019195-100100.000Propithecus_coquereli
ENSG00000153944MSI286100.000ENSPVAG00000017053MSI210090.785Pteropus_vampyrus
ENSG00000153944MSI210092.378ENSPNYG00000018393msi2a10092.378Pundamilia_nyererei
ENSG00000153944MSI210090.274ENSPNAG00000000844msi2b10088.754Pygocentrus_nattereri
ENSG00000153944MSI210093.617ENSPNAG00000014957msi2a10092.097Pygocentrus_nattereri
ENSG00000153944MSI294100.000ENSRNOG00000025338Msi2100100.000Rattus_norvegicus
ENSG00000153944MSI29183.333ENSRBIG00000032064-7298.182Rhinopithecus_bieti
ENSG00000153944MSI294100.000ENSRROG00000034421-100100.000Rhinopithecus_roxellana
ENSG00000153944MSI2100100.000ENSSBOG00000026425MSI2100100.000Saimiri_boliviensis_boliviensis
ENSG00000153944MSI210098.765ENSSHAG00000008672MSI210098.765Sarcophilus_harrisii
ENSG00000153944MSI29197.101ENSSFOG00015012168msi2b7487.204Scleropages_formosus
ENSG00000153944MSI29491.549ENSSFOG00015021687-9787.948Scleropages_formosus
ENSG00000153944MSI29793.227ENSSMAG00000018484msi2a10088.110Scophthalmus_maximus
ENSG00000153944MSI210085.987ENSSDUG00000021968-9992.053Seriola_dumerili
ENSG00000153944MSI29793.227ENSSDUG00000014507msi2a10088.110Seriola_dumerili
ENSG00000153944MSI29793.227ENSSLDG00000017172msi2a10088.110Seriola_lalandi_dorsalis
ENSG00000153944MSI29376.087ENSSLDG00000021332-6876.087Seriola_lalandi_dorsalis
ENSG00000153944MSI29293.407ENSSPUG00000000913-9494.304Sphenodon_punctatus
ENSG00000153944MSI29793.227ENSSPAG00000017793msi2a9686.032Stegastes_partitus
ENSG00000153944MSI2100100.000ENSSSCG00000038505MSI2100100.000Sus_scrofa
ENSG00000153944MSI28199.034ENSTGUG00000008452MSI210099.034Taeniopygia_guttata
ENSG00000153944MSI210087.179ENSTRUG00000021248msi2a10086.866Takifugu_rubripes
ENSG00000153944MSI29186.957ENSTBEG00000001241MSI27382.645Tupaia_belangeri
ENSG00000153944MSI291100.000ENSTTRG00000002189MSI210090.756Tursiops_truncatus
ENSG00000153944MSI210099.602ENSUAMG00000000700MSI210099.602Ursus_americanus
ENSG00000153944MSI29597.203ENSUMAG00000000505MSI29592.075Ursus_maritimus
ENSG00000153944MSI28799.020ENSVPAG00000006837-6284.615Vicugna_pacos
ENSG00000153944MSI2100100.000ENSVVUG00000011783MSI210098.671Vulpes_vulpes
ENSG00000153944MSI29392.857ENSXCOG00000006113msi2a8987.500Xiphophorus_couchianus
ENSG00000153944MSI29793.227ENSXMAG00000000608msi2a10087.320Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005844polysome21873635.IBAComponent
GO:0008266poly(U) RNA binding-IEAFunction
GO:0048864stem cell development-IEAProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent
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