EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
23492366CHD1 is a 5q21 tumor suppressor required for ERG rearrangement in prostate cancer.Cancer Res2013 May 1Burkhardt Ldoi: 10.1158/0008-5472.CAN-12-1342
25175909ERG and CHD1 heterogeneity in prostate cancer: use of confocal microscopy in assessment of microscopic foci.Prostate2014 NovTereshchenko IVdoi: 10.1002/pros.22873
19441106Chromodomain helicase/adenosine triphosphatase DNA binding protein 1-like (CHD1l) gene suppresses the nucleus-to-mitochondria translocation of nur77 to sustain hepatocellular carcinoma cell survival.Hepatology2009 JulChen Ldoi: 10.1002/hep.22933.
26751641Assembly of methylated KDM1A and CHD1 drives androgen receptor-dependent transcription and translocation.Nat Struct Mol Biol2016 FebMetzger Edoi: 10.1038/nsmb.3153
22046413Human RNA polymerase II-association factor 1 (hPaf1/PD2) regulates histone methylation and chromatin remodeling in pancreatic cancer.PLoS One2011Dey Pdoi: 10.1371/journal.pone.0026926
22139082Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer.Oncogene2012 Aug 30Liu Wdoi: 10.1038/onc.2011.554
25770290Coordinate loss of MAP3K7 and CHD1 promotes aggressive prostate cancer.Cancer Res2015 Mar 15Rodrigues LUdoi: 10.1158/0008-5472.CAN-14-1596.
27596623Loss of CHD1 causes DNA repair defects and enhances prostate cancer therapeutic responsiveness.EMBO Rep2016 NovKari V-
28646284CHD1L Expression Increases Tumor Progression and Acts as a Predictive Biomarker for Poor Prognosis in Pancreatic Cancer.Dig Dis Sci2017 SepLiu Cdoi: 10.1007/s10620-017-4641-8
28383660CHD1 loss sensitizes prostate cancer to DNA damaging therapy by promoting error-prone double-strand break repair.Ann Oncol2017 Jul 1Shenoy TRdoi: 10.1093/annonc/mdx165.

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr598872313IntronNA0.64
BLCAchr598873707Nonsense_MutationNAR1153*0.09
BLCAchr598876501Missense_MutationNAD1099Y0.06
BLCAchr598882030Missense_MutationnovelQ938E0.14
BLCAchr598860070Splice_SiteNAX1476_splice0.17
BLCAchr598897233Nonsense_MutationnovelQ485*0.26ResIII
BLCAchr598899616Nonsense_MutationnovelQ317*0.3
BLCAchr598858361Missense_MutationnovelH1536Y0.39
BLCAchr598893531Missense_MutationnovelL626V0.41ResIII
BLCAchr598879629Nonsense_MutationnovelR1054*0.42
BLCAchr598901054Missense_MutationnovelL206I0.59
BLCAchr598872103Missense_MutationNAY1270C0.18
BLCAchr598872433Missense_MutationnovelP1232A0.28
BLCAchr598870704Frame_Shift_InsNAE1321Rfs*170.15
BLCAchr598896371Missense_MutationNAY522C0.07ResIII
BLCAchr598879715Nonsense_MutationNAS1025*0.25
BLCAchr598892625SilentNAL694L0.31
BLCAchr598883179Missense_MutationnovelA876G0.13
BLCAchr598859016Splice_SitenovelX1509_splice0.43
BLCAchr598900987Missense_MutationNAD228G0.42
BLCAchr598904939Missense_MutationNAE71D0.4
BLCAchr598856609Nonsense_MutationnovelS1635*0.07
BRCAchr598889197Missense_MutationnovelS741Y0.05
BRCAchr598902915Missense_MutationnovelR141K0.26
BRCAchr598893536Missense_MutationNAS624C0.29ResIII
BRCAchr598899633Missense_MutationNAK311R0.16
BRCAchr598900982SilentNAR230R0.28
BRCAchr598901040Frame_Shift_InsNAR211Efs*40.14
BRCAchr598902920SilentNAV139V0.12
BRCAchr598883107Missense_MutationNAR900Q0.28
BRCAchr598889223Missense_MutationNAR732S0.27
BRCAchr598893547Missense_MutationNAK620N0.14ResIII
BRCAchr598898715Missense_MutationNAE379K0.23
BRCAchr598905045Missense_MutationNAS36C0.32
BRCAchr598870704Frame_Shift_InsNAE1321Rfs*170.44
BRCAchr598888146Frame_Shift_InsNAM813Nfs*390.6
CESCchr598881991Missense_MutationnovelG951C0.63
CESCchr598901052SilentnovelL206L0.41
CESCchr598868551Missense_MutationNAE1398K0.36
CESCchr598869868Frame_Shift_DelnovelR1331Kfs*60.29
CESCchr598869869In_Frame_InsnovelR1331delinsNW0.33
CESCchr598876550SilentNAF1082F0.46
CESCchr598876436SilentnovelR1120R0.25
CESCchr598879628Missense_Mutationrs768256433R1054Q0.4
CESCchr598882110Missense_MutationNAR911H0.26
CESCchr598888230Missense_MutationnovelR785H0.23
CESCchr598896388SilentnovelT516T0.44
CESCchr598900995SilentnovelY225Y0.45
CESCchr598905027Missense_MutationnovelG42E0.13
CESCchr598893430SilentnovelF659F0.38
CESCchr598892533SilentnovelQ724Q0.14
CESCchr598893453Missense_MutationNAE652Q0.48
CHOLchr598905037Missense_MutationnovelS39G0.41
CHOLchr5988554403'UTRnovel0.29
COADchr598872313IntronNA0.52
COADchr598876483Missense_MutationNAE1105K0.38
COADchr598898748Missense_MutationNAP368S0.28
COADchr598856681Missense_MutationnovelR1611M0.07
COADchr598873598Missense_MutationNAR1189Q0.28
COADchr598863576Missense_MutationNAR1420I0.3
COADchr598892628Missense_MutationnovelF693I0.09
COADchr598901041Frame_Shift_DelNAK210Rfs*390.24
COADchr598870705Frame_Shift_DelNAE1321Kfs*220.07
COADchr598900972Missense_MutationNAR233H0.29
COADchr598879550Splice_SitenovelX1079_splice0.1
COADchr598896441Missense_MutationNAG499R0.16ResIII
COADchr598903895Missense_MutationnovelS90N0.25
COADchr598870705Frame_Shift_DelNAE1321Kfs*220.3
COADchr598894666Silentrs148360350T577T0.24
COADchr598876438Missense_Mutationrs768739262R1120W0.36
COADchr598901004In_Frame_InsNAD221dup0.31
COADchr598870705Frame_Shift_DelNAE1321Kfs*220.36
COADchr5988562773'UTRnovel0.38
COADchr598872313Intronnovel0.54
COADchr598898326Frame_Shift_DelnovelK432Vfs*60.22
COADchr598872313IntronNA0.34
COADchr598900828Missense_MutationnovelR281Q0.16
COADchr598870704Frame_Shift_InsNAE1321Rfs*170.48
COADchr598872313IntronNA0.5
COADchr598875096Missense_MutationNAK1139T0.19
COADchr598902940Missense_Mutationrs368581644D133N0.14
COADchr598858246Missense_MutationNAR1574I0.3
COADchr598863550Missense_MutationNAK1429Q0.36
COADchr598868595Missense_MutationnovelK1383T0.28
COADchr598885602SilentNAD848D0.38
COADchr598876461Missense_MutationnovelR1112H0.09
COADchr598882003Frame_Shift_DelnovelV947Tfs*150.21
COADchr598899631Nonsense_MutationnovelE312*0.05
COADchr598893560Frame_Shift_InsnovelA616Gfs*130.09ResIII
COADchr598888143Missense_MutationnovelV814A0.49
COADchr598901041Frame_Shift_DelNAK210Rfs*390.09
COADchr598901040Frame_Shift_InsNAR211Efs*40.2
ESCAchr598888147Missense_MutationnovelM813V0.49
ESCAchr598858298Missense_MutationnovelH1557Y0.22
ESCAchr598875084Missense_MutationnovelG1143D0.34
ESCAchr598898271SilentnovelP450P0.21
ESCAchr598882105Missense_MutationnovelV913I0.11
ESCAchr598896347Missense_MutationnovelY530C0.13ResIII
ESCAchr598868530Missense_MutationnovelE1405K0.25
GBMchr598856631Missense_MutationNAH1628Y0.2
GBMchr598863469Missense_MutationnovelD1456Y0.25
GBMchr598863564Missense_MutationnovelV1424A0.07
GBMchr598869825Missense_MutationnovelK1346Q0.24
GBMchr598873598Missense_MutationNAR1189Q0.32
GBMchr598883139Missense_MutationnovelQ889H0.24
GBMchr598894650Missense_MutationNAR583W0.19ResIII
GBMchr598897202Missense_MutationnovelS495Y0.24ResIII
GBMchr598868548Missense_MutationnovelP1399S0.07
GBMchr598896346Nonsense_MutationnovelY530*0.25ResIII
HNSCchr598858378In_Frame_InsnovelR1529_L1530insWSLPL0.05
HNSCchr598901300Missense_MutationnovelS158C0.23
HNSCchr598873706Missense_MutationnovelR1153Q0.23
HNSCchr598899616Missense_MutationnovelQ317E0.19
HNSCchr5988563643'UTRrs7677010990.38
HNSCchr598897321Splice_SitenovelX456_splice0.24
HNSCchr598858266Missense_MutationnovelK1567N0.45
KICHchr5988563773'UTRnovel0.28
KIRCchr598892605SilentnovelK700K0.49
KIRCchr598882066Missense_MutationNAA926T0.28
KIRCchr598903845Nonsense_MutationnovelQ107Ffs*50.04
KIRCchr598868590Missense_MutationNAS1385A0.19
KIRPchr598856595Missense_MutationNAH1640Y0.65
KIRPchr598860006Missense_Mutationrs749012080Y1497C0.63
KIRPchr598899528Missense_MutationnovelM346K0.33
KIRPchr598901270Missense_Mutationrs370850474E168G0.47
KIRPchr5989264795'UTRnovel0.53
LGGchr598872160Missense_Mutationrs200447490I1251T0.08
LGGchr598896359Missense_MutationnovelE526V0.16ResIII
LGGchr598858288Missense_Mutationrs72775611R1560Q0.36
LGGchr598873687SilentnovelD1159D0.4
LIHCchr598876432Missense_MutationNAN1122D0.27
LIHCchr598898329Missense_MutationnovelK431T0.22
LIHCchr598893527Missense_MutationnovelY627C0.06ResIII
LIHCchr598856712Nonsense_MutationnovelR1601*0.4
LIHCchr598888128Frame_Shift_InsnovelI819Nfs*330.1
LUADchr598901193Missense_MutationNAQ194E0.23
LUADchr598856563SilentNAT1650T0.11
LUADchr598900827SilentnovelR281R0.06
LUADchr598889175Missense_MutationNAF748L0.19
LUADchr598868621Missense_MutationnovelK1374N0.22
LUADchr598875085Missense_MutationNAG1143C0.3
LUADchr598889082SilentnovelA779A0.32
LUSCchr598901191Missense_MutationnovelQ194H0.32
LUSCchr598858982Missense_MutationnovelH1520Y0.39
LUSCchr598898407Missense_MutationNAG405V0.73
LUSCchr598856725Splice_RegionnovelR1596R0.38
LUSCchr598903838Missense_MutationnovelQ109R0.07
LUSCchr598903839Nonsense_MutationnovelQ109*0.08
LUSCchr598879628Missense_MutationnovelR1054P0.2
LUSCchr598876428Missense_MutationnovelI1123S0.35
LUSCchr598896299Missense_MutationNAQ546P0.29ResIII
LUSCchr598902949Missense_MutationnovelE130K0.36
LUSCchr598888196Silentrs752845055L796L0.42
LUSCchr598872322Intronnovel0.4
LUSCchr598892618Missense_MutationnovelR696H0.24
LUSCchr598892646Missense_MutationNAH687N0.28
LUSCchr598926386Translation_Start_SiteNAM1?0.26
LUSCchr598893544SilentnovelN621N0.18
LUSCchr598899570Missense_MutationNAW332S0.46
OVchr598901058Missense_MutationNAK204N0.82
OVchr598858183Missense_MutationnovelS1595I0.08
OVchr598893459Missense_MutationnovelL650F0.09
OVchr598893416Missense_MutationnovelK664M0.11
OVchr598879705Splice_SitenovelX1021_splice0.4
OVchr598856430Missense_MutationnovelV1695L0.31
OVchr598926339SilentnovelE16E0.08
OVchr598889085Missense_MutationNAE778D0.22
OVchr598892696Frame_Shift_InsnovelD670Vfs*30.07
OVchr5988561893'UTRnovel0.1
PAADchr598873624SilentnovelL1180L0.2
PRADchr598869768Frame_Shift_InsnovelE1365Mfs*70.45
PRADchr598881103SilentnovelV1011V0.23
PRADchr598883107Missense_MutationNAR900Q0.31
PRADchr598893573Missense_MutationNAG612R0.89ResIII
PRADchr598893466In_Frame_InsnovelQ647delinsHSIFLIAFCLFER0.05
PRADchr598856468Missense_MutationNAR1682K0.74
PRADchr598856470Silentrs772098911Q1681Q0.73
PRADchr598856636Missense_MutationNAR1626T0.8
PRADchr598856521Nonsense_MutationnovelW1664*0.1
PRADchr598856671SilentnovelD1614D0.36
PRADchr598859986Missense_Mutationrs779411940R1504W0.33
READchr598876501Missense_MutationNAD1099H0.14
READchr598856641Missense_MutationNAK1624N0.47
READchr598888189Missense_MutationnovelR799C0.44
READchr598872144Missense_MutationnovelE1256D0.05
READchr598856485SilentnovelR1676R0.42
READchr598900981Missense_MutationnovelR230I0.4
SARCchr598900954Missense_MutationnovelN239I0.16
SARCchr598905065SilentnovelG29G0.09
SKCMchr598876448SilentNAR1116R0.24
SKCMchr598894650Missense_MutationNAR583W0.39ResIII
SKCMchr598894651Missense_MutationnovelK582N0.39ResIII
SKCMchr598900882Missense_MutationnovelV263D0.44
SKCMchr598900883Missense_MutationnovelV263I0.44
SKCMchr598863523Missense_MutationNAL1438F0.55
SKCMchr598872417Missense_MutationNAQ1237R0.39
SKCMchr598858333Missense_MutationNAS1545F0.47
SKCMchr598899527Missense_MutationNAM346I0.35
SKCMchr598881074Splice_SitenovelX1020_splice0.11
SKCMchr598882111Missense_MutationnovelR911C0.36
SKCMchr598896345Nonsense_MutationNAG531*0.32ResIII
SKCMchr598870753SilentNAT1304T0.35
SKCMchr598893513Missense_MutationNAD632N0.28ResIII
SKCMchr598858989SilentnovelL1517L0.19
SKCMchr598872432Missense_MutationNAP1232L0.36
SKCMchr598892617SilentNAR696R0.32
SKCMchr598888105Missense_MutationNAR827C0.27
SKCMchr598881113Missense_MutationnovelP1008L0.2
SKCMchr598893489Missense_MutationNAL640F0.4ResIII
SKCMchr598870694Missense_MutationnovelS1324F0.58
STADchr598872313Intronnovel0.2
STADchr598901041Frame_Shift_DelNAK210Rfs*390.25
STADchr598872313IntronNA0.42
STADchr598858227SilentNAS1580S0.23
STADchr5988562143'UTRnovel0.3
STADchr598873601Missense_MutationNAE1188G0.33
STADchr598869777Missense_MutationnovelK1362Q0.44
STADchr598872314Intronnovel0.29
STADchr598872313IntronNA0.48
STADchr598901041Frame_Shift_DelNAK210Rfs*390.27
STADchr598900973Missense_MutationNAR233C0.1
STADchr598870705Frame_Shift_DelNAE1321Kfs*220.08
STADchr598901041Frame_Shift_DelNAK210Rfs*390.29
STADchr598872313Intronnovel0.21
STADchr598899530SilentnovelG345G0.3
STADchr598870705Frame_Shift_DelNAE1321Kfs*220.1
STADchr598885590SilentNAA852A0.35
STADchr598888210Missense_Mutationrs758876162L792I0.29
STADchr598870705Frame_Shift_DelNAE1321Kfs*220.2
STADchr598900815Frame_Shift_DelnovelG286Efs*340.17
STADchr598872313Intronnovel0.48
STADchr598899484Frame_Shift_DelnovelR361Dfs*30.24
STADchr598872313IntronNA0.52
STADchr598872186SilentnovelC1242C0.07
STADchr598858210Missense_MutationnovelR1586H0.35
STADchr598872369Intronnovel0.24
STADchr598873598Missense_MutationNAR1189Q0.14
STADchr598905093Missense_Mutationrs778115031S20L0.24
TGCTchr598898419Missense_MutationnovelK401M0.19
THCAchr598897206Missense_MutationnovelH494Y0.37ResIII
UCECchr598901016Missense_MutationnovelE218D0.38
UCECchr598863445Nonsense_MutationNAE1464*0.3
UCECchr598868597Missense_MutationNAK1382N0.29
UCECchr598926384Translation_Start_SiteNAM1?0.35
UCECchr598897293Missense_MutationnovelA465T0.11
UCECchr598898272Missense_MutationNAP450H0.39
UCECchr598900812Splice_RegionnovelG286G0.3
UCECchr598897196Missense_MutationNAC497Y0.34ResIII
UCECchr5988562633'UTRnovel0.31
UCECchr598870705Frame_Shift_DelNAE1321Kfs*220.53
UCECchr598883086Splice_SitenovelX906_splice0.32
UCECchr598885631Missense_MutationnovelK839Q0.42
UCECchr598897282SilentnovelK468K0.48
UCECchr598900853Missense_MutationnovelT273P0.29
UCECchr598896378Missense_MutationnovelL520V0.18ResIII
UCECchr598883197Missense_MutationNAG870V0.19
UCECchr598881371Missense_MutationnovelT958A0.41
UCECchr598905017SilentnovelS45S0.36
UCECchr598894597Splice_RegionnovelK600K0.28
UCECchr598901336Splice_SitenovelX146_splice0.11
UCECchr598888188Missense_MutationNAR799H0.36
UCECchr598872092Missense_MutationNAE1274K0.17
UCECchr598873620Missense_MutationnovelD1182N0.06
UCECchr598856666Missense_MutationNAR1616M0.21
UCECchr598879672Missense_MutationNAN1039K0.15
UCECchr598856503SilentNAA1670A0.46
UCECchr598872313IntronNA1
UCECchr598926384Translation_Start_SiteNAM1?0.11
UCECchr598872313IntronNA0.6
UCECchr598879628Missense_Mutationrs768256433R1054Q0.39
UCECchr598856391Missense_Mutationrs200109773R1708W0.34
UCECchr598904920Missense_MutationnovelP78T0.1
UCECchr598899601Missense_MutationnovelW322R0.26
UCECchr598896335Frame_Shift_DelnovelL534Yfs*30.22ResIII
UCECchr5988552383'UTRnovel0.42
UCECchr598872313IntronNA0.44
UCECchr598876530Missense_Mutationrs370090244R1089H0.36
UCECchr598888188Missense_MutationNAR799H0.33
UCECchr598896283SilentnovelT551T0.36
UCECchr598898325Frame_Shift_InsnovelF433Vfs*60.34
UCECchr598856583Missense_Mutationrs146540815R1644W0.38
UCECchr598868569Missense_MutationNAH1392Y0.33
UCECchr598872313IntronNA0.32
UCECchr598883222SilentnovelL862L0.45
UCECchr598873598Missense_MutationNAR1189Q0.33
UCECchr598897248Missense_MutationnovelE480K0.1ResIII
UCECchr598872440SilentnovelP1229P0.1
UCECchr5988563643'UTRrs7677010990.41
UCECchr598856618Missense_MutationnovelR1632H0.44
UCECchr598860064Missense_MutationnovelL1478M0.41
UCECchr598868526Missense_MutationnovelS1406Y0.39
UCECchr598888188Missense_MutationNAR799H0.48
UCECchr598894641Missense_MutationnovelF586I0.4ResIII
UCECchr598856640Frame_Shift_InsnovelD1625Rfs*20.48
UCECchr598896335Frame_Shift_DelnovelL534Yfs*30.52ResIII
UCECchr598897252SilentnovelG478G0.49
UCECchr598900819Missense_MutationnovelR284I0.45
UCECchr598870705Frame_Shift_DelNAE1321Kfs*220.41
UCECchr598863574Missense_MutationnovelM1421V0.07
UCECchr598873598Missense_MutationNAR1189Q0.3
UCECchr598859987Frame_Shift_DelnovelK1503Nfs*150.42
UCECchr598904915SilentnovelP79P0.47
UCECchr598881129Nonsense_MutationnovelE1003*0.18
UCECchr598883107Missense_MutationNAR900Q0.33
UCECchr598881093SilentnovelL1015L0.26
UCECchr598901033Frame_Shift_DelnovelQ212Lfs*360.4
UCECchr598879600SilentNAE1063E0.45
UCECchr598873598Missense_MutationNAR1189Q0.26
UCECchr598888176Missense_MutationnovelR803Q0.12
UCECchr598894602Missense_MutationnovelD599Y0.08ResIII
UCECchr598859987Frame_Shift_DelnovelK1503Nfs*150.15
UCECchr598894649Missense_MutationnovelR583Q0.42ResIII
UCECchr598868498SilentnovelS1415S0.4
UCECchr598868499Missense_Mutationrs147154039S1415N0.41
UCECchr598881301Missense_MutationnovelE981G0.29
UCECchr598858277Missense_MutationnovelD1564Y0.39
UCECchr598872078Missense_MutationnovelM1278I0.22
UCECchr598873598Missense_MutationNAR1189Q0.35
UCECchr598889107Missense_MutationnovelN771T0.38
UCECchr598894615Silentrs536544766E594E0.39
UCECchr598903878Missense_Mutationrs34128229V96I0.24
UCECchr598872313IntronNA0.38
UCECchr598904957SilentnovelE65E0.08
UCECchr598856673Missense_MutationnovelD1614Y0.45
UCECchr598892638SilentnovelE689E0.44
UCECchr598900931Missense_MutationnovelE247K0.35
UCECchr598858246Missense_MutationNAR1574I0.25
UCECchr598872338Intronnovel0.11
UCECchr598893513Missense_MutationnovelD632Y0.13ResIII
UCECchr598896388SilentnovelT516T0.24
UCECchr598903794Nonsense_MutationnovelE124*0.12
UCECchr5988561553'UTRnovel0.8
UCECchr598856545Missense_MutationnovelR1656S0.33
UCECchr598856665SilentnovelR1616R0.41
UCECchr598870756Missense_MutationnovelQ1303H0.36
UCECchr598873644Missense_MutationnovelN1174D0.2
UCECchr598879603Missense_MutationnovelK1062N0.34
UCECchr598888167Missense_MutationnovelR806Q0.4
UCECchr598892616Nonsense_MutationNAR697*0.27
UCECchr598872313IntronNA0.78
UCECchr598872552Missense_MutationnovelG1192V0.16
UCECchr598872313IntronNA0.62
UCECchr598858320Missense_MutationnovelH1549Q0.34
UCECchr598870705Frame_Shift_DelNAE1321Kfs*220.42
UCECchr598883228Missense_MutationnovelF860L0.28
UCECchr598900828Missense_MutationnovelR281Q0.24
UCECchr5988552993'UTRnovel0.32
UCECchr598885595Frame_Shift_InsnovelN851*0.37
UCECchr598872469Nonsense_MutationNAE1220*0.87
UCECchr598899579Missense_MutationNAH329R0.48
UCECchr598872303Intronnovel0.36
UCECchr598893554Missense_MutationnovelR618Q0.42ResIII
UCECchr598899483Frame_Shift_InsnovelR361Kfs*150.36
UCECchr598901258Frame_Shift_InsnovelK172Rfs*780.34
UCECchr598872414Splice_Regionnovel0.44
UCECchr598873598Missense_MutationNAR1189Q0.34
UCECchr598902903Missense_MutationNAK145T0.24
UCECchr5988563773'UTRnovel0.25
UCECchr598870785Missense_MutationnovelD1294N0.51
UCECchr598872340Intronnovel0.28
UCECchr598876530Missense_Mutationrs370090244R1089H0.26
UCECchr598881076Missense_MutationnovelK1020N0.28
UCECchr598892618Missense_MutationnovelR696H0.06
UCECchr598893573Missense_MutationnovelG612C0.22ResIII
UCECchr598901271Nonsense_MutationnovelE168*0.47
UCECchr598904930SilentnovelV74V0.24
UCECchr598881126Missense_MutationnovelN1004H0.39
UCECchr598894605Missense_MutationnovelK598Q0.37ResIII
UCECchr598879560Missense_Mutationrs370760984A1077T0.46
UCECchr598869761Missense_MutationNAD1367G0.29
UCECchr598872313IntronNA0.58
UCECchr598856697Missense_MutationnovelK1606E0.47
UCECchr598879603Frame_Shift_InsnovelE1063Gfs*30.4
UCECchr598856699Missense_MutationnovelR1605K0.31
UCECchr598858288Missense_Mutationrs72775611R1560Q0.36
UCECchr598888141Missense_Mutationrs753957067R815W0.24
UCECchr598899620Missense_MutationnovelE315D0.39
UCECchr598872313IntronNA0.5
UCSchr598900972Missense_MutationNAR233H0.35
UCSchr598856543Missense_MutationnovelD1657G0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
COADDEL0.22171.1167e-13
KIRPDEL0.03820.11554
LUADDEL0.29657.4776e-05
LUSCDEL0.66470.002071
MESODEL0.14940.20184
PRADDEL0.20124.8919e-36
STADDEL0.29482.8835e-08
THCADEL00.23456

Survival Analysis
CancerP-value Q-value
THYM0.0011

Kaplan-Meier Survival Analysis

MESO0.029

Kaplan-Meier Survival Analysis

ACC0.02

Kaplan-Meier Survival Analysis

SKCM0.019

Kaplan-Meier Survival Analysis

KIRP0.006

Kaplan-Meier Survival Analysis

COAD0.013

Kaplan-Meier Survival Analysis

PCPG0.025

Kaplan-Meier Survival Analysis

READ0.021

Kaplan-Meier Survival Analysis

LAML0.001

Kaplan-Meier Survival Analysis

LGG0.00011

Kaplan-Meier Survival Analysis

CHOL0.011

Kaplan-Meier Survival Analysis

LUAD0.04

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000153922 (Gene tree)
Gene ID
1105
Gene Symbol
CHD1
Alias
N
Full Name
chromodomain helicase DNA binding protein 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
74,973 bases
Position
chr5:98,853,985-98,928,957
Accession
1915
RBP type
canonical RBP
Summary
The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000284049ResIIIPF04851.158.1e-0711
ENSP00000483667ResIIIPF04851.158.1e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
17620414Chd1 and yFACT act in opposition in regulating transcription.Mol Cell Biol2007 SepBiswas D-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000508756CHD1-205724--- (aa)--
ENST00000614616CHD1-2128095-ENSP000004836671710 (aa)-O14646
ENST00000511628CHD1-207599--- (aa)--
ENST00000505657CHD1-203736-ENSP00000422225113 (aa)-H0Y8V4
ENST00000414220CHD1-202434--- (aa)--
ENST00000284049CHD1-2016457XM_005271866ENSP000002840491710 (aa)XP_005271924O14646
ENST00000505982CHD1-204758--- (aa)--
ENST00000512392CHD1-2081968--- (aa)--
ENST00000512844CHD1-209848-ENSP0000042258922 (aa)-H0Y8Z0
ENST00000514344CHD1-2112955--- (aa)--
ENST00000513064CHD1-210786--- (aa)--
ENST00000511067CHD1-206817-ENSP00000479403272 (aa)-A0A087WVF4
Gene Model
Click here to download ENSG00000153922's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000153922Attention Deficit Disorder with Hyperactivity1.3270000E-00418937294
ENSG00000153922Body Mass Index7E-725673413
ENSG00000153922Body Mass Index5E-725673413
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000153922rs11317778598905525TNeutrophil percentage of granulocytes27863252[0.02-0.036] unit increase0.02782362EFO_0007994
ENSG00000153922rs11317778598905525TEosinophil percentage of granulocytes27863252[0.022-0.037] unit decrease0.0293293EFO_0007996
ENSG00000153922rs11317778598905525TEosinophil percentage of white cells27863252[0.022-0.037] unit decrease0.02928997EFO_0007991
ENSG00000153922rs11317778598905525TEosinophil counts27863252[0.018-0.033] unit decrease0.02551863EFO_0004842
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000153922's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000153922CHD19557.023ENSG00000173575CHD28794.898
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000153922CHD16782.627ENSAPOG00000005764chd19782.971Acanthochromis_polyacanthus
ENSG00000153922CHD19583.178ENSAOCG00000023105chd19477.531Amphiprion_ocellaris
ENSG00000153922CHD19583.178ENSAPEG00000013544chd19478.721Amphiprion_percula
ENSG00000153922CHD17182.319ENSAMXG00000010843chd19183.502Astyanax_mexicanus
ENSG00000153922CHD110099.299ENSCATG00000032035CHD110099.299Cercocebus_atys
ENSG00000153922CHD110099.241ENSCSAG00000015339CHD110099.241Chlorocebus_sabaeus
ENSG00000153922CHD110097.487ENSCANG00000036916CHD110097.487Colobus_angolensis_palliatus
ENSG00000153922CHD110096.145ENSCGRG00001023943Chd110096.145Cricetulus_griseus_chok1gshd
ENSG00000153922CHD110096.145ENSCGRG00000008652Chd110096.145Cricetulus_griseus_crigri
ENSG00000153922CHD19679.817ENSCSEG00000009553chd19277.435Cynoglossus_semilaevis
ENSG00000153922CHD19492.453ENSEASG00005016110CHD19997.923Equus_asinus_asinus
ENSG00000153922CHD19680.734ENSELUG00000017677chd19378.115Esox_lucius
ENSG00000153922CHD17181.255ENSFHEG00000021164chd18782.759Fundulus_heteroclitus
ENSG00000153922CHD19184.466ENSGMOG00000001537chd19667.184Gadus_morhua
ENSG00000153922CHD19189.994ENSGALG00000031327-9690.121Gallus_gallus
ENSG00000153922CHD19672.477ENSGAFG00000019880chd19282.844Gambusia_affinis
ENSG00000153922CHD19996.226ENSGGOG00000011463CHD19996.226Gorilla_gorilla
ENSG00000153922CHD19184.466ENSHCOG00000014222chd19179.678Hippocampus_comes
ENSG00000153922CHD19183.495ENSIPUG00000001369chd19281.380Ictalurus_punctatus
ENSG00000153922CHD16395.154ENSLAFG00000023183CHD19995.154Loxodonta_africana
ENSG00000153922CHD110099.299ENSMFAG00000031226CHD110099.299Macaca_fascicularis
ENSG00000153922CHD18399.085ENSMMUG00000014090CHD19999.085Macaca_mulatta
ENSG00000153922CHD110099.241ENSMNEG00000045073CHD110099.241Macaca_nemestrina
ENSG00000153922CHD19995.275ENSMLEG00000041096CHD19995.688Mandrillus_leucophaeus
ENSG00000153922CHD17280.565ENSMZEG00005010957chd18983.572Maylandia_zebra
ENSG00000153922CHD110093.341ENSMOCG00000019121Chd110093.224Microtus_ochrogaster
ENSG00000153922CHD17978.267ENSMALG00000013317chd19578.072Monopterus_albus
ENSG00000153922CHD110094.454MGP_CAROLIEiJ_G0021099Chd19996.852Mus_caroli
ENSG00000153922CHD110095.738ENSMUSG00000023852Chd19997.037Mus_musculus
ENSG00000153922CHD110094.396MGP_PahariEiJ_G0023414Chd19997.040Mus_pahari
ENSG00000153922CHD18976.076ENSNBRG00000006860chd19177.741Neolamprologus_brichardi
ENSG00000153922CHD19996.952ENSNLEG00000014493CHD19996.952Nomascus_leucogenys
ENSG00000153922CHD110093.031ENSOANG00000004891CHD110094.394Ornithorhynchus_anatinus
ENSG00000153922CHD15976.794ENSORLG00015016725chd19377.223Oryzias_latipes_hsok
ENSG00000153922CHD19998.294ENSPPAG00000043367CHD19998.294Pan_paniscus
ENSG00000153922CHD110099.708ENSPTRG00000017103CHD110099.708Pan_troglodytes
ENSG00000153922CHD110099.299ENSPANG00000006387CHD110099.299Papio_anubis
ENSG00000153922CHD19483.019ENSPKIG00000024719chd19279.134Paramormyrops_kingsleyae
ENSG00000153922CHD17381.315ENSPMGG00000005785chd19381.315Periophthalmus_magnuspinnatus
ENSG00000153922CHD110095.911ENSPEMG00000015939Chd110095.911Peromyscus_maniculatus_bairdii
ENSG00000153922CHD15076.533ENSPLAG00000006473-8577.765Poecilia_latipinna
ENSG00000153922CHD19674.265ENSPREG00000004209chd19774.759Poecilia_reticulata
ENSG00000153922CHD18395.701ENSRNOG00000014434Chd19995.490Rattus_norvegicus
ENSG00000153922CHD110096.264ENSRBIG00000044325CHD110096.439Rhinopithecus_bieti
ENSG00000153922CHD110099.124ENSRROG00000001726CHD110099.124Rhinopithecus_roxellana
ENSG00000153922CHD17181.766ENSSFOG00015007161chd19082.439Scleropages_formosus
ENSG00000153922CHD17978.335ENSSDUG00000018314chd19477.966Seriola_dumerili
ENSG00000153922CHD15183.713ENSSLDG00000017244chd18486.019Seriola_lalandi_dorsalis
ENSG00000153922CHD17978.835ENSSPAG00000007024chd19578.171Stegastes_partitus
ENSG00000153922CHD19296.154ENSSSCG00000014177CHD110098.106Sus_scrofa
ENSG00000153922CHD19075.418ENSTRUG00000010282chd19673.418Takifugu_rubripes
ENSG00000153922CHD17277.606ENSTNIG00000007101chd19578.204Tetraodon_nigroviridis
ENSG00000153922CHD19673.394ENSXCOG00000017184chd19175.244Xiphophorus_couchianus
ENSG00000153922CHD17777.736ENSXMAG00000014538chd19578.621Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001650fibrillar center-IDAComponent
GO:0003677DNA binding-IEAFunction
GO:0004003ATP-dependent DNA helicase activity9326634.TASFunction
GO:0005515protein binding22419161.26751641.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus22046413.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm22046413.IDAComponent
GO:0006338chromatin remodeling-IEAProcess
GO:0006357regulation of transcription by RNA polymerase II9326634.TASProcess
GO:0016569covalent chromatin modification28866611.IMPProcess
GO:0032508DNA duplex unwinding-IEAProcess
GO:0035064methylated histone binding21029866.IDAFunction
GO:0035064methylated histone binding28866611.IMPFunction
GO:0043923positive regulation by host of viral transcription25297984.IMPProcess
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