EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24684457ZIC1 is a putative tumor suppressor in thyroid cancer by modulating major signaling pathways and transcription factor FOXO3a.J Clin Endocrinol Metab2014 JulQiang Wdoi: 10.1210/jc.2013-3729
23774800Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers.Epigenetics2013 JunHuang RLdoi: 10.4161/epi.24816
19135984ZIC1 is downregulated through promoter hypermethylation in gastric cancer.Biochem Biophys Res Commun2009 Feb 20Wang LJdoi: 10.1016/j.bbrc.2008.12.180
29956756ZIC1 acts a tumor suppressor in breast cancer by targeting survivin.Int J Oncol2018 SepHan Wdoi: 10.3892/ijo.2018.4450
21347233ZIC1 is downregulated through promoter hypermethylation, and functions as a tumor suppressor gene in colorectal cancer.PLoS One2011 Feb 15Gan Ldoi: 10.1371/journal.pone.0016916.
26670443Clinicopathological significance of increased ZIC1 expression in human endometrial cancer.J Huazhong Univ Sci Technolog Med Sci2015 DecGu Xdoi: 10.1007/s11596-015-1525-z
25953442Screening the molecular targets of ovarian cancer based on bioinformatics analysis.Tumori2015 Jul-AugDu Ldoi: 10.5301/tj.5000319
26207911Zic1 Promoter Hypermethylation in Plasma DNA Is a Potential Biomarker for Gastric Cancer and Intraepithelial Neoplasia.PLoS One2015 Jul 24Chen Xdoi: 10.1371/journal.pone.0133906
22799764ZIC1 modulates cell-cycle distributions and cell migration through regulation of sonic hedgehog, PI(3)K and MAPK signaling pathways in gastric cancer.BMC Cancer2012 Jul 16Zhong Jdoi: 10.1186/1471-2407-12-290.
28119363Genome-wide DNA Methylation Profiling Reveals Methylation Markers Associated with 3q Gain for Detection of Cervical Precancer and Cancer.Clin Cancer Res2017 Jul 15Verlaat Wdoi: 10.1158/1078-0432.CCR-16-2641

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr3147410737Missense_MutationNAG209C0.17
BLCAchr3147410306Missense_MutationnovelT65M0.13zf-C2H2
BLCAchr3147412595Missense_MutationnovelH354Y0.26
BLCAchr3147410947Missense_MutationnovelE279K0.21
BLCAchr3147413439Missense_MutationNAS411F0.13
BLCAchr3147410447Missense_MutationNAA112V0.09
BLCAchr3147410124SilentnovelD4D0.56
BLCAchr3147410167Missense_MutationNAA19T0.24
BLCAchr3147412667Missense_MutationNAR378C0.13
BLCAchr3147410756Missense_MutationNAR215H0.1
BLCAchr3147411006SilentNAG298G0.32
BLCAchr3147410501Missense_MutationnovelG130D0.16
BLCAchr3147410264Missense_MutationNAP51H0.33
BLCAchr3147410875Missense_MutationNAH255N0.38
BLCAchr3147410517Silentrs369830340T135T0.61
BLCAchr3147410535SilentNAL141L0.14
BRCAchr31474151623'UTRnovel0.21
BRCAchr3147411075Missense_MutationNAI321M0.45
BRCAchr31474136413'UTRnovel0.1
BRCAchr3147413419SilentnovelS404S0.13
BRCAchr3147410669Missense_MutationNAS186L0.51
BRCAchr3147410823Missense_MutationnovelN237K0.16
CESCchr3147410472SilentNAL120L0.17
CESCchr31474150083'UTRnovel0.37
CESCchr31474151793'UTRnovel0.29
CESCchr3147410497Missense_MutationNAG129R0.26
CESCchr3147412538Missense_MutationnovelE335K0.41
CESCchr3147412674Missense_MutationnovelH380R0.1
CESCchr3147410973SilentNAY287Y0.21
CESCchr3147413403Missense_MutationNAS399F0.21
CESCchr3147410385SilentnovelS91S0.31
CESCchr3147412564SilentNAF343F0.23
CESCchr3147413476Silentrs748925382S423S0.18
CESCchr31474144033'UTRnovel0.19
COADchr3147411083Missense_MutationNAR324M0.35
COADchr3147412577Missense_MutationNAD348N0.14
COADchr3147410681Missense_MutationNAA190D0.28
COADchr3147410439SilentnovelD109D0.21
COADchr3147410729Missense_MutationNAA206V0.53
COADchr3147410403SilentnovelT97T0.35
COADchr3147412631Missense_Mutationrs756221956M366V0.25
COADchr3147410405Missense_MutationnovelR98Q0.3
COADchr3147410647Missense_MutationNAG179S0.14
COADchr3147412678Missense_MutationNAM381I0.17
COADchr3147411055Missense_MutationNAR315C0.29
COADchr31474135703'UTRnovel0.48
COADchr31474137343'UTRnovel0.43
COADchr31474137003'UTRnovel0.5
COADchr3147410818Missense_MutationNAA236T0.05
COADchr3147410742SilentNAA210A0.15
COADchr3147413480Missense_Mutationrs75992939S425P0.44
COADchr3147412605Missense_MutationnovelT357M0.5
DLBCchr3147410350Missense_MutationnovelH80N0.22
DLBCchr3147411021SilentnovelP303P0.19
ESCAchr31474150513'UTRnovel0.21
ESCAchr3147411069Missense_MutationnovelL319F0.22
ESCAchr3147411086Missense_MutationnovelT325M0.32
ESCAchr3147411008Missense_MutationnovelE299G0.21
ESCAchr3147413407SilentnovelG400G0.33
ESCAchr31474143393'UTRnovel0.17
ESCAchr31474142213'UTRnovel0.33
ESCAchr31474154593'UTRnovel0.34
ESCAchr3147412598Missense_MutationnovelV355L0.16
GBMchr3147410638Missense_MutationNAE176K0.41
GBMchr3147410299Missense_MutationNAA63T0.51zf-C2H2
GBMchr3147410746Missense_MutationNAA212T0.18
GBMchr3147412581Missense_MutationNAR349H0.25
HNSCchr3147410571SilentnovelH153H0.2
HNSCchr3147412579Missense_MutationnovelD348E0.24
HNSCchr3147410440Missense_Mutationrs138004710A110T0.71
HNSCchr3147410273Missense_MutationnovelH54R0.29zf-C2H2
HNSCchr3147413518Silentrs564229372A437A0.07
HNSCchr3147410574SilentnovelA154A0.14
HNSCchr3147410180Missense_MutationnovelH23L0.39
HNSCchr3147410471Missense_MutationnovelL120P0.28
HNSCchr3147412557Missense_MutationnovelR341P0.2
HNSCchr3147410494Missense_MutationnovelF128I0.14
HNSCchr3147410730SilentNAA206A0.23
HNSCchr3147410631Silentrs527947592P173P0.1
HNSCchr3147413458Silentrs758948864P417P0.16
HNSCchr3147410419Missense_MutationnovelR103G0.29
HNSCchr3147410198Frame_Shift_DelnovelE30Nfs*1340.09
HNSCchr3147410809Missense_MutationnovelE233K0.16
HNSCchr3147410204Missense_MutationnovelR31Q0.26
HNSCchr3147410698Missense_Mutationrs764570223G196S0.24
HNSCchr3147410277Missense_MutationNAE55D0.63zf-C2H2
HNSCchr3147411059Missense_MutationNAS316C0.5
KIRPchr3147410484SilentnovelS124S0.62
KIRPchr3147410485Missense_MutationnovelA125S0.63
KIRPchr3147411007Nonsense_MutationNAE299*0.22
LIHCchr3147410309Missense_MutationnovelS66L0.38zf-C2H2
LIHCchr3147410850SilentNAF246F0.26
LIHCchr31474136743'UTRnovel0.29
LIHCchr3147410873Missense_MutationNAT254K0.36
LIHCchr3147410725In_Frame_DelnovelA206_A210del0.7
LUADchr3147410825Missense_MutationNAP238H0.22
LUADchr3147410522Frame_Shift_DelnovelA138Rfs*260.65
LUADchr3147412609Missense_MutationNAS358R0.34
LUADchr3147410889Missense_MutationNAE259D0.94
LUADchr3147413375Missense_MutationnovelG390S0.44
LUADchr3147410742SilentNAA210A0.3
LUADchr3147413384Missense_MutationnovelP393T0.12
LUADchr3147410919Missense_MutationnovelH269Q0.13
LUADchr3147410652SilentnovelQ180Q0.25
LUADchr3147412651Silentrs147993210T372T0.05
LUADchr3147410495Missense_MutationNAF128Y0.26
LUADchr3147410497Missense_MutationNAG129W0.28
LUADchr3147410655Silentrs769657730V181V0.14
LUADchr3147410419Missense_MutationNAR103C0.13
LUADchr3147411060SilentnovelS316S0.29
LUADchr3147410566Missense_MutationNAG152C0.24
LUADchr3147412610Missense_MutationnovelD359Y0.21
LUADchr3147411056Missense_MutationnovelR315P0.08
LUADchr3147410545Missense_MutationnovelG145R0.07
LUADchr3147413401Missense_MutationnovelS398R0.28
LUADchr3147410903Missense_MutationnovelP264Q0.15
LUADchr31474135703'UTRnovel0.22
LUADchr3147412553Missense_MutationnovelD340Y0.25
LUADchr3147410862Missense_MutationnovelH250Q0.07
LUADchr3147410965Frame_Shift_DelnovelA285Pfs*350.06
LUADchr3147413524SilentNAS439S0.16
LUADchr3147410737Missense_MutationNAG209C0.12
LUADchr3147410358Missense_MutationNAH82Q0.13
LUADchr3147410890Missense_MutationNAH260N0.06
LUADchr31474135963'UTRnovel0.14
LUADchr3147413505Missense_MutationNAA433D0.15
LUADchr3147413385Missense_MutationnovelP393L0.16
LUADchr3147412626Missense_MutationnovelC364S0.29
LUADchr3147410516Missense_MutationnovelT135K0.33
LUADchr3147410739SilentnovelG209G0.39
LUADchr3147410583Missense_MutationnovelN157K0.39
LUADchr3147410385Missense_MutationnovelS91R0.27
LUADchr31474136373'UTRnovel0.31
LUADchr3147410654Missense_MutationNAV181E0.19
LUADchr3147410874SilentNAT254T0.08
LUADchr3147410329Missense_MutationnovelA73S0.25
LUADchr3147410277Missense_MutationNAE55D0.13zf-C2H2
LUADchr3147411059Missense_MutationNAS316C0.43
LUADchr31474135703'UTRnovel0.19
LUADchr3147410613Missense_MutationnovelF167L0.39
LUADchr3147410244Missense_MutationNAM44I0.09
LUADchr3147412622Missense_MutationNAL363I0.16
LUADchr3147411053Missense_MutationNAA314V0.41
LUSCchr3147410604Missense_MutationNAR164S0.44
LUSCchr3147412615Missense_MutationNAK360N0.11
LUSCchr3147411045Silentrs748631648K311K0.17
LUSCchr3147410290Missense_Mutationrs748870052G60C0.15zf-C2H2
LUSCchr3147410189Missense_MutationnovelG26D0.33
LUSCchr3147411022Missense_MutationnovelC304S0.27
LUSCchr3147413536Missense_Mutationrs545219481N443K0.22
LUSCchr3147410856SilentNAT248T0.28
LUSCchr3147410436Silentrs768784777G108G0.16
LUSCchr3147410592Missense_Mutationrs377681059N160K0.45
LUSCchr3147410775Missense_MutationnovelI221M0.32
LUSCchr3147410382Silentrs781380196S90S0.17
LUSCchr3147411013Frame_Shift_DelnovelC304Afs*160.11
LUSCchr3147413410SilentnovelY401Y0.08
LUSCchr3147412578Missense_MutationnovelD348G0.12
LUSCchr3147413479Silentrs368298985P424P0.27
LUSCchr3147410573Missense_MutationnovelA154E0.67
LUSCchr3147410425SilentNAR105R0.29
LUSCchr3147410988Silentrs780076930H292H0.04
LUSCchr3147410808SilentnovelP232P0.5
LUSCchr3147410658SilentnovelT182T0.25
LUSCchr3147410443Missense_MutationnovelA111P0.27
LUSCchr3147410265SilentnovelP51P0.27
LUSCchr3147410823SilentnovelN237N0.14
LUSCchr3147412528SilentnovelP331P0.31
LUSCchr3147412676Missense_MutationNAM381V0.1
LUSCchr3147410304SilentNAF64F0.12
LUSCchr3147413368SilentnovelS387S0.5
LUSCchr3147410701Missense_MutationnovelY197H0.19
LUSCchr3147410703Nonsense_MutationNAY197*0.15
LUSCchr3147410900Missense_MutationnovelG263V0.22
LUSCchr3147411053Missense_MutationNAA314G0.22
LUSCchr3147410551Missense_MutationnovelH147N0.31
LUSCchr3147410973Nonsense_MutationNAY287*0.28
LUSCchr3147413366Missense_MutationnovelS387T0.35
LUSCchr3147410501Missense_MutationNAG130A0.11
LUSCchr3147410902Missense_MutationnovelP264T0.13
LUSCchr3147410522Missense_MutationNAA137D0.29
LUSCchr3147410523SilentNAA137A0.28
LUSCchr3147410947Nonsense_MutationnovelE279*0.2
LUSCchr3147412667Missense_MutationnovelR378S0.21
LUSCchr31474101015'UTRnovel0.8
LUSCchr3147410407Missense_MutationNAD99Y0.11
LUSCchr3147410271SilentnovelS53S0.28
LUSCchr3147410186Missense_MutationNAA25V0.3
LUSCchr3147412537Nonsense_MutationNAC334*0.27
LUSCchr3147410484SilentNAS124S0.19
LUSCchr3147410913SilentnovelS267S0.23
LUSCchr3147410738Missense_MutationnovelG209V0.2
LUSCchr3147410208Missense_MutationNAD32E0.26
LUSCchr3147410371Missense_MutationNAG87S0.19
LUSCchr3147412650Missense_MutationnovelT372K0.23
LUSCchr3147413463Missense_MutationnovelT419K0.11
LUSCchr3147410141Missense_Mutationrs765916669P10Q0.25
LUSCchr31474136623'UTRnovel0.33
LUSCchr3147410361SilentnovelP83P0.14
LUSCchr3147412526Missense_MutationnovelP331A0.7
LUSCchr3147413541Nonsense_MutationnovelW445*0.21
LUSCchr3147410747Missense_Mutationrs752213758A212D0.58
MESOchr31474099855'UTRnovel0.5
OVchr3147410185Missense_MutationNAA25T0.06
OVchr3147413456Missense_MutationnovelP417T0.18
OVchr3147410916Silentrs753755493N268N0.12
PAADchr3147410940Missense_MutationnovelC276W0.09
PAADchr3147410577SilentNAS155S0.35
PAADchr31474101045'UTRnovel0.1
PAADchr3147411006SilentNAG298G0.04
PRADchr3147410448Silentrs763182380A112A0.38
PRADchr3147412577Missense_MutationNAD348N0.17
PRADchr31474135883'UTRnovel0.2
PRADchr3147411006SilentNAG298G0.05
PRADchr3147410270Nonsense_MutationnovelS53*0.25zf-C2H2
PRADchr3147410734Missense_MutationNAH208N0.18
PRADchr3147413410SilentnovelY401Y0.46
READchr3147410850Missense_MutationNAF246L0.14
READchr3147410946SilentNAR278R0.26
READchr3147410948Missense_MutationNAE279G0.29
READchr3147412647Missense_MutationNAY371C0.33
READchr3147410688Silentrs759778746P192P0.59
READchr31474136333'UTRnovel0.6
SARCchr31474095885'UTRnovel0.44
SKCMchr3147410375Missense_MutationNAS88F0.38
SKCMchr3147413457Missense_MutationnovelP417L0.32
SKCMchr3147411024SilentNAC304C0.38
SKCMchr3147413484Missense_MutationNAS426F0.34
SKCMchr3147413411Missense_MutationNAE402K0.5
SKCMchr3147410228Missense_MutationNAP39L0.76
SKCMchr3147410595SilentnovelG161G0.28
SKCMchr3147410726Frame_Shift_InsnovelA206Efs*530.07
SKCMchr3147412576Missense_MutationNAS347R0.23
SKCMchr3147410211SilentnovelV33V0.29
SKCMchr3147412660SilentnovelS375S0.49
SKCMchr3147412531SilentNAF332F0.22
SKCMchr3147410619SilentNAG169G0.29
SKCMchr3147413537Missense_MutationNAE444K0.08
SKCMchr31474135943'UTRnovel0.44
SKCMchr3147410914Missense_MutationnovelN268H0.22
SKCMchr3147413484Missense_MutationNAS426F0.31
STADchr3147410688Silentrs759778746P192P0.13
STADchr31474136343'UTRnovel0.18
STADchr3147410286Silentrs755293143S58S0.15
STADchr3147412537SilentnovelC334C0.08
STADchr3147412662Missense_MutationNAS376L0.27
STADchr3147410698Missense_Mutationrs764570223G196S0.16
STADchr3147410727SilentnovelA205A0.13
STADchr3147412527Missense_MutationnovelP331L0.25
STADchr3147410524Missense_MutationNAA138T0.5
STADchr3147410496SilentNAF128F0.17
STADchr31474100095'UTRnovel0.6
STADchr3147410577SilentNAS155S0.31
STADchr3147410236Missense_MutationnovelD42N0.37
STADchr3147410371Missense_MutationNAG87S0.42
STADchr3147410958SilentNAP282P0.21
STADchr3147410873Missense_MutationNAT254M0.25
STADchr3147410378Missense_MutationNAY89S0.15
STADchr3147410345Missense_MutationnovelG78D0.24
STADchr3147410728Missense_MutationNAA206T0.29
STADchr3147411055Missense_MutationNAR315C0.32
STADchr3147410523Silentrs750080738A137A0.38
STADchr3147410169Silentrs756393471A19A0.57
STADchr3147412636Silentrs777958545C367C0.13
STADchr3147412565Missense_MutationNAA344T0.34
STADchr3147410437Missense_MutationNAD109N0.2
STADchr3147412668Missense_MutationNAR378H0.31
STADchr3147410615Missense_MutationNAS168L0.54
STADchr3147410734Missense_MutationNAH208N0.36
STADchr3147410825Missense_MutationNAP238H0.2
STADchr3147410528Missense_MutationnovelG139D0.3
STADchr3147410976SilentNAK288K0.14
STADchr3147410169Silentrs756393471A19A0.09
STADchr3147410942Missense_MutationNAP277L0.06
STADchr3147410385SilentnovelS91S0.44
STADchr3147410247SilentNAG45G0.41
THCAchr3147410271SilentNAS53S0.41
UCECchr31474096305'UTRnovel0.44
UCECchr3147411056Missense_MutationnovelR315H0.28
UCECchr3147410862SilentnovelH250H0.4
UCECchr31474143483'UTRnovel0.4
UCECchr31474147763'UTRnovel0.49
UCECchr31474095175'UTRnovel0.19
UCECchr3147410577SilentNAS155S0.21
UCECchr3147410685SilentnovelA191A0.31
UCECchr31474094455'UTRnovel0.48
UCECchr31474136043'UTRnovel0.45
UCECchr31474141463'UTRnovel0.33
UCECchr31474143713'UTRnovel0.13
UCECchr31474150653'UTRnovel0.4
UCECchr3147413517Missense_Mutationrs373965585A437V0.2
UCECchr31474096075'UTRnovel0.56
UCECchr3147411095Splice_SitenovelX328_splice0.5
UCECchr3147410525Missense_MutationnovelA138V0.56
UCECchr3147410885Missense_MutationNAV258A0.27
UCECchr31474135693'UTRrs3766819830.21
UCECchr31474096625'UTRnovel0.2
UCECchr3147410548Missense_MutationNAL146I0.31
UCECchr3147410656Missense_MutationnovelT182S0.5
UCECchr31474141323'UTRnovel0.32
UCECchr3147410587Missense_MutationnovelV159L0.46
UCECchr31474145183'UTRnovel0.47
UCECchr31474095085'UTRnovel0.32
UCECchr31474143563'UTRnovel0.44
UCECchr3147412548Missense_MutationnovelG338D0.14
UCECchr31474141933'UTRnovel0.34
UCECchr3147413372Nonsense_MutationnovelQ389*0.22
UCECchr31474094075'UTRnovel0.08
UCECchr31474096425'UTRnovel0.2
UCECchr3147412667Missense_MutationNAR378C0.42
UCECchr3147413518SilentnovelA437A0.38
UCECchr3147410715SilentNAN201N0.46
UCECchr3147412663SilentNAS376S0.43
UCECchr3147413360Missense_MutationnovelE385K0.45
UCECchr31474150513'UTRnovel0.39
UCECchr31474094315'UTRnovel0.42
UCECchr3147411056Missense_MutationnovelR315H0.6
UCECchr3147413504Missense_MutationnovelA433S0.59
UCECchr31474146853'UTRnovel0.36
UCECchr31474152593'UTRnovel0.35
UCECchr31474154323'UTRnovel0.09
UCECchr31474143513'UTRnovel0.48
UCECchr3147410945Missense_MutationNAR278H0.4
UCECchr3147410706Silentrs777295809G198G0.13
UCECchr31474150033'UTRnovel0.55
UCECchr31474146853'UTRnovel0.37
UCECchr31474151073'UTRnovel0.64
UCECchr3147412606SilentNAT357T0.36
UCECchr31474154813'UTRnovel0.37
UCECchr3147412662Missense_MutationNAS376L0.27
UCECchr31474143513'UTRnovel0.23
UCECchr31474095065'UTRnovel0.35
UCECchr31474142853'UTRnovel0.43
UCECchr31474147773'UTRnovel0.1
UCECchr31474095175'UTRnovel0.15
UCECchr31474141973'UTRnovel0.32
UCECchr3147410918Missense_MutationnovelH269R0.38
UCECchr31474142833'UTRnovel0.33
UCECchr31474146593'UTRnovel0.38
UCECchr31474148713'UTRnovel0.34
UCECchr31474150603'UTRnovel0.33
UCECchr31474094575'UTRnovel0.48
UCECchr31474096185'UTRnovel0.33
UCECchr3147412588SilentnovelK351K0.3
UCECchr31474136343'UTRnovel0.31
UCECchr31474141653'UTRnovel0.32
UCECchr31474145343'UTRnovel0.33
UCECchr31474141953'UTRnovel0.35
UCECchr31474141973'UTRnovel0.34
UCECchr31474144933'UTRnovel0.48
UCECchr31474154693'UTRrs1117363910.42
UCECchr31474149253'UTRnovel0.25
UCECchr31474142543'UTRnovel0.24
UCECchr3147411012SilentnovelK300K0.12
UCECchr31474141653'UTRnovel0.2
UCECchr3147410371Missense_MutationNAG87S0.42
UCECchr3147410688Silentrs759778746P192P0.2
UCECchr3147413371SilentnovelS388S0.16
UCECchr31474151483'UTRnovel0.42
UCECchr3147410755Missense_MutationnovelR215C0.26
UCECchr3147410944Missense_MutationnovelR278C0.42
UCECchr3147410370SilentnovelV86V0.3
UCECchr31474141033'UTRnovel0.5
UCECchr3147410884Missense_Mutationrs773749583V258M0.21
UCECchr3147410994SilentnovelR294R0.1
UCECchr3147410583SilentNAN157N0.43
UCECchr31474135703'UTRnovel0.53
UCECchr31474143713'UTRnovel0.46
UCECchr31474153813'UTRnovel0.35
UCECchr31474155963'UTRnovel0.23
UCECchr31474141333'UTRnovel0.53

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRCDEL0.11550.11092
KIRPAMP0.31250.15981

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.0047

Kaplan-Meier Survival Analysis

MESO0.028

Kaplan-Meier Survival Analysis

ACC0.00011

Kaplan-Meier Survival Analysis

KIRP0.0013

Kaplan-Meier Survival Analysis

LGG0.00021

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000152977 (Gene tree)
Gene ID
7545
Gene Symbol
ZIC1
Alias
ZIC|ZNF201
Full Name
Zic family member 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
116,872 bases
Position
chr3:147,393,422-147,510,293
Accession
12872
RBP type
canonical RBP
Summary
This gene encodes a member of the ZIC family of C2H2-type zinc finger proteins. Members of this family are important during development. Aberrant expression of this gene is seen in medulloblastoma, a childhood brain tumor. This gene is closely linked to the gene encoding zinc finger protein of the cerebellum 4, a related family member on chromosome 3. This gene encodes a transcription factor that can bind and transactivate the apolipoprotein E gene. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000282928zf-C2H2PF00096.262e-2013
ENSP00000282928zf-C2H2PF00096.262e-2023
ENSP00000282928zf-C2H2PF00096.262e-2033
ENSP00000419664zf-C2H2PF00096.261.1e-0912
ENSP00000419664zf-C2H2PF00096.261.1e-0922
ENSP00000419664zf-metPF12874.70.0001311
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000282928ZIC1-2015241-ENSP00000282928447 (aa)-Q15915
ENST00000481840ZIC1-204418--- (aa)--
ENST00000472523ZIC1-202567--- (aa)--
ENST00000474034ZIC1-2031044NR_121655-- (aa)--
ENST00000488404ZIC1-205539-ENSP00000419664136 (aa)-H7C5D8
Gene Model
Click here to download ENSG00000152977's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000152977rs5305802213147394469TAge at first sexual intercourse27089180[0.017-0.034] unit increase0.0257722EFO_0009749
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000152977's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000152977ZIC18980.165ENSACIG00000018732zic19386.280Amphilophus_citrinellus
ENSG00000152977ZIC170100.000ENSCAFG00000032541-100100.000Canis_familiaris
ENSG00000152977ZIC110055.670ENSEBUG00000002180zic110056.735Eptatretus_burgeri
ENSG00000152977ZIC110055.670ENSEBUG00000006709zic110056.735Eptatretus_burgeri
ENSG00000152977ZIC18997.521ENSFDAG00000013872ZIC110099.265Fukomys_damarensis
ENSG00000152977ZIC110087.248ENSKMAG00000011689zic110086.353Kryptolebias_marmoratus
ENSG00000152977ZIC19258.553ENSOANG00000007365-9069.333Ornithorhynchus_anatinus
ENSG00000152977ZIC18981.818ENSORLG00020012199zic19282.500Oryzias_latipes_hni
ENSG00000152977ZIC18995.868ENSSHAG00000015025ZIC110096.133Sarcophilus_harrisii
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding21873635.IBAFunction
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-IEAFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific21873635.IBAFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific-ISAFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific19274049.NASFunction
GO:0001228DNA-binding transcription activator activity, RNA polymerase II-specific-IEAFunction
GO:0003700DNA-binding transcription factor activity-ISSFunction
GO:0003700DNA-binding transcription factor activity8542595.TASFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus8542595.IDAComponent
GO:0005737cytoplasm-IEAComponent
GO:0007389pattern specification process-ISSProcess
GO:0007417central nervous system development21873635.IBAProcess
GO:0007420brain development8542595.IDAProcess
GO:0007628adult walking behavior-IEAProcess
GO:0008589regulation of smoothened signaling pathway-ISSProcess
GO:0021510spinal cord development-IEAProcess
GO:0030154cell differentiation-IEAProcess
GO:0042307positive regulation of protein import into nucleus-ISSProcess
GO:0042472inner ear morphogenesis-ISSProcess
GO:0045893positive regulation of transcription, DNA-templated-ISSProcess
GO:0045944positive regulation of transcription by RNA polymerase II-IEAProcess
GO:0046872metal ion binding-IEAFunction
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