EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
20358297ARLTS1, MDM2 and RAD51 gene variations are associated with familial breast cancer.Mol Biol Rep2011 JanAkisik Edoi: 10.1007/s11033-010-0113-3
18375053ARLTS1 - a novel tumor suppressor gene.Cancer Lett2008 Jun 8Yendamuri Sdoi: 10.1016/j.canlet.2008.02.021
16570116Cancer Familial Aggregation (CFA) and G446A polymorphism in ARLTS1 gene.Breast Cancer Res Treat2006 SepMasojc B-
15843669Familial cancer associated with a polymorphism in ARLTS1.N Engl J Med2005 Apr 21Calin GA-
18337727ARLTS1 germline variants and the risk for breast, prostate, and colorectal cancer.Eur J Hum Genet2008 AugSiltanen Sdoi: 10.1038/ejhg.2008.43
22028916Contribution of ARLTS1 Cys148Arg (T442C) variant with prostate cancer risk and ARLTS1 function in prostate cancer cells.PLoS One2011Siltanen Sdoi: 10.1371/journal.pone.0026595
20067102[Polymorphism of ARLTS1 gene in early-onset ovarian cancer].Sichuan Da Xue Xue Bao Yi Xue Ban2009 NovYang XY-
17449901Association of the ARLTS1 Cys148Arg variant with sporadic and familial colorectal cancer.Carcinogenesis2007 AugCastellvi-Bel S-
17699778Tumor suppressor functions of ARLTS1 in lung cancers.Cancer Res2007 Aug 15Yendamuri S-
19509554Association of the ARLTS1 variants with familial ovarian cancer risk in China.Int J Gynecol Cancer2009 MayYang XYdoi: 10.1111/IGC.0b013e3181a39d03.
23940804ARLTS1 and prostate cancer risk--analysis of expression and regulation.PLoS One2013 Aug 5Siltanen Sdoi: 10.1371/journal.pone.0072040

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr13496317213'UTRnovel0.37
ACCchr1349630934Missense_MutationnovelP163A0.4
ACCchr1349630588Silentrs751269133N47N0.85
BLCAchr1349630756SilentnovelL103L0.16
BLCAchr1349630487Nonsense_MutationnovelQ14*0.22MMR_HSR1
BRCAchr1349630786SilentnovelA113A0.14
BRCAchr1349630515Missense_Mutationrs769707452A23V0.98MMR_HSR1
BRCAchr1349630673Missense_MutationNAD76N0.59MMR_HSR1
CESCchr1349630531SilentNAL28L0.23
CESCchr13496318693'UTRnovel0.43
CESCchr13496323973'UTRnovel0.78
CESCchr13496321333'UTRnovel0.34
CESCchr13496325193'UTRnovel0.13
CESCchr1349630459SilentnovelV4V0.19
CESCchr13496315083'UTRnovel0.48
CESCchr13496316103'UTRnovel0.44
COADchr13496326093'UTRnovel0.15
COADchr13496315103'UTRnovel0.34
COADchr13496326883'UTRnovel0.33
COADchr1349630639Frame_Shift_InsNAQ67Afs*270.38MMR_HSR1
COADchr13496321483'UTRnovel0.35
COADchr13496312443'UTRnovel0.39
COADchr13496327583'UTRnovel0.25
COADchr13496314853'UTRnovel0.34
COADchr13496325003'UTRnovel0.27
COADchr13496322393'UTRrs5408387760.31
COADchr1349630637Missense_Mutationrs143660006V64I0.25MMR_HSR1
COADchr1349630790Missense_MutationNAV115I0.27MMR_HSR1
COADchr1349630527Missense_MutationNAT27M0.34MMR_HSR1
COADchr1349630700Missense_Mutationrs374531869V85M0.1MMR_HSR1
COADchr13496314233'UTRrs5378445150.35
COADchr1349630640Frame_Shift_DelNAQ67Rfs*410.24MMR_HSR1
COADchr13496314263'UTRrs7764600070.2
COADchr1349630645SilentNAG66G0.43
COADchr13496332583'UTRnovel0.3
COADchr13496324843'UTRnovel0.1
COADchr13496321473'UTRnovel0.27
COADchr13496322673'UTRnovel0.11
COADchr1349630648Missense_MutationNAQ67H0.15MMR_HSR1
COADchr13496314233'UTRrs5378445150.23
COADchr13496329963'UTRnovel0.61
COADchr1349630663SilentNAA72A0.47
COADchr13496322843'UTRnovel0.18
COADchr13496333733'UTRnovel0.19
COADchr13496335363'UTRnovel0.1
COADchr13496314233'UTRrs5378445150.17
COADchr13496314263'UTRrs7764600070.15
COADchr13496320323'UTRnovel0.4
COADchr1349630527Missense_MutationNAT27M0.49MMR_HSR1
COADchr13496322843'UTRnovel0.05
COADchr13496324663'UTRrs5648331000.17
COADchr13496320733'UTRnovel0.2
ESCAchr13496321413'UTRnovel0.28
ESCAchr13496322393'UTRrs5408387760.37
ESCAchr13496333953'UTRnovel0.38
GBMchr1349630813Missense_MutationnovelN122K0.32MMR_HSR1
GBMchr1349630689Missense_MutationnovelT81K0.08MMR_HSR1
GBMchr1349630639Frame_Shift_InsNAQ67Afs*270.08MMR_HSR1
GBMchr1349630816SilentNAK123K0.38
HNSCchr1349630466Missense_MutationnovelR7G0.11
KIRCchr1349630705Silentrs377295532Y86Y0.25
LAMLchr1349630772Missense_Mutationrs753334860D109N0.12MMR_HSR1
LGGchr1349630615Silentrs369494120H56H0.32
LIHCchr13496335433'UTRnovel0.44
LIHCchr13496329263'UTRnovel0.21
LUADchr1349630699SilentNAL84L0.35
LUADchr1349630487Missense_MutationNAQ14K0.47MMR_HSR1
LUADchr1349630624SilentNAL59L0.18
LUSCchr13496310583'UTRnovel0.3
OVchr1349630493Missense_MutationNAV16L0.19MMR_HSR1
OVchr13496335623'UTRnovel0.29
OVchr1349630639Frame_Shift_InsNAQ67Afs*270.08MMR_HSR1
OVchr1349630639Frame_Shift_InsNAQ67Afs*270.13MMR_HSR1
OVchr1349630535Missense_MutationnovelY30H0.04MMR_HSR1
PRADchr1349630528Silentrs557546186T27T0.49
READchr13496326693'UTRnovel0.29
READchr1349630479Missense_Mutationrs566163670A11V0.52
READchr13496334843'UTRnovel0.14
READchr13496328253'UTRnovel0.12
READchr13496310583'UTRnovel0.11
READchr13496314413'UTRnovel0.39
SARCchr13496334783'UTRnovel0.08
SKCMchr1349630547Missense_Mutationrs776703350G34S0.37MMR_HSR1
SKCMchr1349630429Splice_SiteNA0.17
SKCMchr1349630737Missense_MutationNAP97L0.2MMR_HSR1
SKCMchr1349630634Missense_MutationNAD63N0.13MMR_HSR1
SKCMchr1349630546SilentnovelK33K0.06
SKCMchr1349630772Missense_Mutationrs753334860D109N0.14MMR_HSR1
SKCMchr1349630772Missense_Mutationrs753334860D109N0.42MMR_HSR1
SKCMchr1349630459SilentnovelV4V0.41
SKCMchr1349630696SilentNAI83I0.35
SKCMchr1349630634Missense_MutationNAD63N0.43MMR_HSR1
STADchr1349630835Missense_MutationNAL130V0.74
STADchr1349630790Missense_MutationNAV115I0.42MMR_HSR1
UCECchr13496320983'UTRnovel0.12
UCECchr13496326743'UTRnovel0.37
UCECchr13496328813'UTRnovel0.42
UCECchr13496318373'UTRnovel0.6
UCECchr13496334063'UTRnovel0.29
UCECchr13496311473'UTRnovel0.28
UCECchr13496335813'UTRnovel0.45
UCECchr13496331733'UTRnovel0.32
UCECchr1349630901Missense_Mutationrs778849305R152W0.18
UCECchr13496322843'UTRnovel0.29
UCECchr13496330503'UTRnovel0.29
UCECchr1349630479Missense_Mutationrs566163670A11V0.33
UCECchr13496328653'UTRnovel0.09
UCECchr13496335683'UTRnovel0.51
UCECchr13496322393'UTRrs5408387760.33
UCECchr13496333273'UTRnovel0.35
UCECchr13496321813'UTRnovel0.55
UCECchr13496321033'UTRnovel0.34
UCECchr1349630528Silentrs557546186T27T0.53
UCECchr1349630548Missense_MutationnovelG34D0.53MMR_HSR1
UCECchr1349630721Missense_MutationnovelD92Y0.5MMR_HSR1
UCECchr1349631031Missense_MutationnovelR195I0.53
UCECchr13496329123'UTRnovel0.22
UCECchr13496322383'UTRrs2008039380.5
UCECchr13496315463'UTRnovel0.42
UCECchr13496323003'UTRnovel0.52
UCECchr13496326463'UTRnovel0.33
UCECchr13496315963'UTRnovel0.44
UCECchr1349630990SilentnovelL181L0.4
UCECchr13496310583'UTRnovel0.15
UCECchr13496316903'UTRnovel0.3
UCECchr13496322223'UTRnovel0.16
UCECchr13496326633'UTRnovel0.16
UCECchr13496332883'UTRnovel0.36
UCECchr13496334993'UTRnovel0.31
UCECchr13496322513'UTRnovel0.42
UCECchr13496325003'UTRnovel0.32
UCECchr1349630823Missense_MutationnovelA126S0.33
UCECchr1349630969Missense_MutationnovelK174N0.29
UCECchr1349630534SilentnovelL29L0.4
UCECchr1349630779Missense_MutationnovelN111S0.24MMR_HSR1
UCECchr1349630977Missense_MutationnovelS177I0.26
UCECchr13496323443'UTRnovel0.23
UCECchr13496312823'UTRnovel0.38
UCECchr13496330233'UTRnovel0.33
UCECchr1349630732SilentnovelR95R0.25
UCECchr1349630628Missense_MutationNAL61I0.29MMR_HSR1
UCECchr13496310973'UTRnovel0.22
UCECchr13496331213'UTRnovel0.37
UCECchr13496332783'UTRnovel0.33
UCECchr13496310983'UTRnovel0.4
UCECchr13496314943'UTRnovel0.44
UCECchr13496321043'UTRnovel0.54
UCECchr13496332423'UTRnovel0.44
UCSchr1349630580Missense_MutationnovelG45C0.32MMR_HSR1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.3392.1677e-19
COADDEL0.02660.24773
KIRCDEL0.11740.031318
LGGDEL0.21055.4722e-09
MESODEL0.40230.0010209
THCADEL0.03410.011063

Survival Analysis
CancerP-value Q-value
THYM0.026

Kaplan-Meier Survival Analysis

STAD0.011

Kaplan-Meier Survival Analysis

SARC0.025

Kaplan-Meier Survival Analysis

ACC0.035

Kaplan-Meier Survival Analysis

SKCM0.0001

Kaplan-Meier Survival Analysis

BRCA0.024

Kaplan-Meier Survival Analysis

TGCT0.045

Kaplan-Meier Survival Analysis

BLCA0.018

Kaplan-Meier Survival Analysis

LAML0.037

Kaplan-Meier Survival Analysis

LGG0.00014

Kaplan-Meier Survival Analysis

UVM0.0014

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000152213 (Gene tree)
Gene ID
115761
Gene Symbol
ARL11
Alias
ARLTS1|FLJ33930
Full Name
ADP ribosylation factor like GTPase 11
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
5,574 bases
Position
chr13:49,628,299-49,633,872
Accession
24046
RBP type
canonical RBP
Summary
This gene encodes a tumor suppressor related to the ADP-ribosylation factor (ARF) family of proteins. The encoded protein may play a role in apoptosis in a caspase-dependent manner. Polymorphisms in this gene have been associated with some familial cancers. [provided by RefSeq, May 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000282026MMR_HSR1PF01926.230.0001311
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000282026ARL11-2013760XM_005266253ENSP00000282026196 (aa)XP_005266310Q969Q4
ENST00000490932ARL11-202217--- (aa)--
Gene Model
Click here to download ENSG00000152213's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000152213's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000152213ARL119685.185ENSAMEG00000002767ARL1110085.185Ailuropoda_melanoleuca
ENSG00000152213ARL1110089.796ENSCJAG00000022614ARL1110089.796Callithrix_jacchus
ENSG00000152213ARL119774.211ENSCAPG00000006154ARL119674.211Cavia_aperea
ENSG00000152213ARL119774.211ENSCPOG00000040608ARL119674.211Cavia_porcellus
ENSG00000152213ARL1110095.408ENSCATG00000011750ARL1110095.408Cercocebus_atys
ENSG00000152213ARL119577.419ENSCLAG00000005195ARL119477.419Chinchilla_lanigera
ENSG00000152213ARL1110094.898ENSCSAG00000018612ARL1110094.898Chlorocebus_sabaeus
ENSG00000152213ARL119261.290ENSCPBG00000008579ARL119361.290Chrysemys_picta_bellii
ENSG00000152213ARL1110095.408ENSCANG00000018107ARL1110095.408Colobus_angolensis_palliatus
ENSG00000152213ARL119185.393ENSCGRG00001010023Arl1110085.393Cricetulus_griseus_chok1gshd
ENSG00000152213ARL119185.393ENSCGRG00000006897Arl1110085.393Cricetulus_griseus_crigri
ENSG00000152213ARL1110080.203ENSDNOG00000009737ARL1110080.203Dasypus_novemcinctus
ENSG00000152213ARL119086.364ENSDORG00000023352Arl119586.364Dipodomys_ordii
ENSG00000152213ARL119088.636ENSEASG00005017293ARL119788.636Equus_asinus_asinus
ENSG00000152213ARL119088.636ENSECAG00000004611ARL119788.636Equus_caballus
ENSG00000152213ARL118983.429ENSEEUG00000009809ARL119283.429Erinaceus_europaeus
ENSG00000152213ARL118983.429ENSFDAG00000000040ARL119983.429Fukomys_damarensis
ENSG00000152213ARL119162.162ENSGAGG00000019477ARL119762.162Gopherus_agassizii
ENSG00000152213ARL1110098.980ENSGGOG00000004442ARL1110098.980Gorilla_gorilla
ENSG00000152213ARL119279.558ENSHGLG00000006725ARL119979.558Heterocephalus_glaber_female
ENSG00000152213ARL119279.558ENSHGLG00100009774ARL119979.558Heterocephalus_glaber_male
ENSG00000152213ARL119081.356ENSJJAG00000001803Arl119581.356Jaculus_jaculus
ENSG00000152213ARL118654.706ENSLACG00000011405ARL118954.706Latimeria_chalumnae
ENSG00000152213ARL119086.364ENSLAFG00000001838ARL1110086.364Loxodonta_africana
ENSG00000152213ARL1110094.388ENSMMUG00000011766ARL1110094.388Macaca_mulatta
ENSG00000152213ARL1110095.408ENSMLEG00000013105ARL1110095.408Mandrillus_leucophaeus
ENSG00000152213ARL119180.337ENSMICG00000006637ARL119780.337Microcebus_murinus
ENSG00000152213ARL118985.143ENSMOCG00000006454Arl119985.143Microtus_ochrogaster
ENSG00000152213ARL119866.495ENSMODG00000024105ARL1110066.495Monodelphis_domestica
ENSG00000152213ARL119086.932MGP_CAROLIEiJ_G0019382Arl1110086.932Mus_caroli
ENSG00000152213ARL119086.364ENSMUSG00000043157Arl1110086.364Mus_musculus
ENSG00000152213ARL119085.227MGP_PahariEiJ_G0030400Arl1110085.227Mus_pahari
ENSG00000152213ARL119084.659MGP_SPRETEiJ_G0020274Arl1110084.659Mus_spretus
ENSG00000152213ARL119283.978ENSMPUG00000018376ARL119683.978Mustela_putorius_furo
ENSG00000152213ARL119083.616ENSMLUG00000029560ARL119783.616Myotis_lucifugus
ENSG00000152213ARL119088.068ENSNGAG00000004637Arl1110088.068Nannospalax_galili
ENSG00000152213ARL1110098.980ENSNLEG00000031734ARL1110098.980Nomascus_leucogenys
ENSG00000152213ARL119069.663ENSOANG00000015544ARL119769.663Ornithorhynchus_anatinus
ENSG00000152213ARL119083.523ENSOCUG00000003013ARL119883.523Oryctolagus_cuniculus
ENSG00000152213ARL119084.181ENSOGAG00000005346ARL1110084.181Otolemur_garnettii
ENSG00000152213ARL119079.096ENSOARG00000005963ARL119879.096Ovis_aries
ENSG00000152213ARL1110098.980ENSPPAG00000033238ARL1110098.980Pan_paniscus
ENSG00000152213ARL1110098.980ENSPTRG00000005876ARL1110098.980Pan_troglodytes
ENSG00000152213ARL1110095.408ENSPANG00000006280ARL1110095.408Papio_anubis
ENSG00000152213ARL119260.000ENSPSIG00000001265ARL1110060.000Pelodiscus_sinensis
ENSG00000152213ARL118669.412ENSPCIG00000002831ARL119569.412Phascolarctos_cinereus
ENSG00000152213ARL118984.000ENSRNOG00000014653Arl1110084.000Rattus_norvegicus
ENSG00000152213ARL1110095.408ENSRBIG00000024949ARL1110095.408Rhinopithecus_bieti
ENSG00000152213ARL1110095.408ENSRROG00000000591ARL1110095.408Rhinopithecus_roxellana
ENSG00000152213ARL119864.433ENSSHAG00000004853ARL1110064.433Sarcophilus_harrisii
ENSG00000152213ARL119256.216ENSSPUG00000006852ARL119856.216Sphenodon_punctatus
ENSG00000152213ARL119179.444ENSSSCG00000036810ARL119179.444Sus_scrofa
ENSG00000152213ARL119285.635ENSUAMG00000009531ARL119985.635Ursus_americanus
ENSG00000152213ARL119285.635ENSUMAG00000018435ARL119985.635Ursus_maritimus
ENSG00000152213ARL118958.286ENSXETG00000015673arl119958.286Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002244hematopoietic progenitor cell differentiation-IEAProcess
GO:0005515protein binding16189514.19060904.IPIFunction
GO:0005525GTP binding21873635.IBAFunction
GO:0005737cytoplasm21873635.IBAComponent
GO:0005886plasma membrane21873635.IBAComponent
GO:0006886intracellular protein transport21873635.IBAProcess
GO:0016192vesicle-mediated transport21873635.IBAProcess
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