EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
17341490PGC-1alpha/beta upregulation is associated with improved oxidative phosphorylation in cells harboring nonsense mtDNA mutations.Hum Mol Genet2007 Apr 15Srivastava S-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr10102141509Missense_MutationnovelP1001A0.11
ACCchr10102140252Missense_MutationnovelA582T0.4
BLCAchr10102147341Missense_MutationNAS1450L0.62
BLCAchr10102147236Missense_MutationNAS1415L0.68
BLCAchr10102149946Missense_MutationnovelD1638N0.22
BLCAchr10102139546SilentnovelL346L0.24
BLCAchr10102139547Missense_Mutationrs753734181E347K0.24
BLCAchr10102138731Missense_MutationnovelS152L0.19
BLCAchr10102137896Missense_MutationNAS67F0.47
BLCAchr10102141030Missense_MutationNAS841L0.4
BLCAchr10102141055SilentnovelS849S0.05
BLCAchr10102146951Missense_MutationNAR1320P0.2
BLCAchr10102148669Missense_MutationNAR1531T0.27
BLCAchr10102149310Missense_MutationNAK1624N0.27
BLCAchr10102139614Missense_MutationnovelS369C0.19
BLCAchr10102140420Missense_MutationNAD638N0.21
BLCAchr10102140707SilentNAL733L0.26
BLCAchr10102141655SilentNAQ1049Q0.14
BLCAchr10102139604Nonsense_MutationnovelR366*0.14
BLCAchr10102138939Missense_MutationNAD184N0.54
BLCAchr10102139703Missense_MutationNAE399Q0.48
BLCAchr10102139273SilentnovelF255F0.29
BLCAchr10102139941Missense_MutationnovelR478M0.08
BLCAchr10102139146Missense_Mutationrs746664279S213C0.11
BLCAchr10102149294Missense_MutationNAR1619Q0.13
BRCAchr10102146861Missense_MutationNAH1290R0.57
BRCAchr10102148642Missense_MutationnovelR1522H0.04
BRCAchr10102148693Missense_MutationnovelI1539T0.09
BRCAchr10102145059SilentnovelR1216R0.09
BRCAchr10102147376Missense_Mutationrs780258251H1462Y0.1
BRCAchr10102146971Nonsense_MutationnovelQ1327*0.19
BRCAchr10102145024Missense_Mutationrs757322330V1205I0.24
BRCAchr10102137914Missense_MutationNAL73Q0.41
BRCAchr10102139338Missense_MutationNAH277P0.19
BRCAchr10102149958Missense_MutationNAV1642I0.35
BRCAchr10102140166Missense_MutationnovelG553V0.39
BRCAchr10102148645Missense_MutationNAS1523L0.34
CESCchr10102147368Missense_MutationNAS1459Y0.26
CESCchr10102148535Intronrs7767610130.39
CESCchr101021501013'UTRnovel0.4
CESCchr10102141788Missense_MutationnovelE1094Q0.29
CESCchr10102141886Missense_MutationNAQ1126H0.17
COADchr10102140264Missense_MutationNAP586S0.36
COADchr10102138654SilentNAS126S0.36
COADchr10102140796Missense_Mutationrs777850442R763H0.27
COADchr10102139236Missense_MutationNAR243H0.23
COADchr10102140933Missense_MutationNAR809G0.16
COADchr10102137889Missense_MutationnovelS65G0.25
COADchr10102140639Missense_Mutationrs17847386V711M0.46
COADchr10102148888Missense_MutationNAF1563L0.31RRM_1
COADchr10102141523SilentNAA1005A0.33
COADchr10102149224Missense_MutationnovelA1596T0.07RRM_1
COADchr10102141449Missense_MutationNAP981S0.33
COADchr10102139816Silentrs749670501P436P0.64
COADchr10102148400Nonsense_MutationnovelR1477*0.4
COADchr10102140614Frame_Shift_DelNAG704Vfs*300.2
COADchr10102138918Missense_Mutationrs771663512R177C0.26
COADchr10102147389Missense_Mutationrs749450563R1466Q0.63
COADchr10102139230Missense_MutationnovelQ241P0.13
COADchr10102140301Missense_MutationNAG598D0.38
COADchr10102139333SilentNAP275P0.31
COADchr10102147388Nonsense_MutationnovelR1466*0.26
COADchr10102149250SilentNAL1604L0.23
COADchr10102141148Silentrs760655362P880P0.09
COADchr10102140077SilentNAA523A0.39
COADchr10102140784Missense_MutationNAR759Q0.33
COADchr10102149203Missense_MutationNAR1589C0.45RRM_1
COADchr10102140795Missense_Mutationrs542386144R763C0.28
COADchr10102143078Missense_MutationnovelE1177G0.05
COADchr10102141705Missense_Mutationrs144417602P1066L0.27
ESCAchr10102139836Frame_Shift_DelnovelN444Pfs*740.36
ESCAchr10102141663Missense_MutationnovelP1052L0.17
ESCAchr10102140703Missense_MutationNAS732F0.16
ESCAchr10102141718SilentnovelV1070V0.33
GBMchr10102140677Silentrs764264530I723I0.33
GBMchr10102141085SilentnovelS859S0.15
GBMchr10102140962SilentnovelC818C0.11
GBMchr10102141061SilentnovelE851E0.21
GBMchr10102141222Missense_MutationnovelS905Y0.48
GBMchr10102140196Missense_MutationnovelD563V0.05
GBMchr10102141085SilentnovelS859S0.1
GBMchr10102149945Missense_MutationnovelF1637L0.14
GBMchr10102138633SilentnovelL119L0.1
GBMchr10102139901Frame_Shift_DelnovelK465Rfs*150.2
GBMchr10102140942Missense_MutationnovelE812Q0.03
GBMchr10102140239Silentrs756554294V577V0.6
GBMchr10102140859Missense_MutationnovelE784A0.17
GBMchr10102141357Missense_MutationnovelP950R0.11
GBMchr10102149937Missense_MutationnovelE1635Q0.09
HNSCchr10102149973Missense_MutationnovelD1647H0.2
HNSCchr10102147019Missense_MutationnovelP1343A0.16
HNSCchr10102148520Missense_Mutationrs776378929R1517W0.23
HNSCchr10102137940Missense_MutationnovelE82K0.49
HNSCchr10102141534Missense_Mutationrs756058587R1009K0.17
HNSCchr10102140653SilentNAS715S0.13
HNSCchr10102145022Missense_MutationnovelG1204A0.22
KICHchr10102140786Missense_MutationnovelR760G0.12
KICHchr10102139670Missense_MutationnovelQ388K0.38
KIRCchr10102147382SilentNAR1464R0.31
KIRCchr10102139618SilentnovelP370P0.38
KIRCchr10102139545Missense_MutationNAL346Q0.24
KIRCchr10102141416Missense_MutationNAV970I0.29
KIRCchr10102138649Missense_Mutationrs775086501V125M0.2
KIRPchr10102140251Missense_MutationnovelQ581H0.21
KIRPchr10102139478Missense_MutationNAA324T0.33
KIRPchr10102140639Missense_Mutationrs17847386V711M0.08
KIRPchr10102140486Missense_MutationnovelP660S0.43
KIRPchr10102146966Missense_Mutationrs764176836R1325H0.28
KIRPchr10102138685Frame_Shift_DelnovelN137Mfs*790.17
LAMLchr10102146832SilentnovelQ1280Q0.34
LGGchr10102139816Silentrs749670501P436P0.12
LGGchr10102139771Missense_MutationnovelK421N0.11
LGGchr10102140852Missense_MutationnovelL782F0.49
LIHCchr10102146750Missense_MutationnovelS1253C0.27
LIHCchr10102149966SilentNAS1644S0.38
LIHCchr10102138686Missense_MutationnovelN137S0.62
LUADchr10102147256Missense_Mutationrs368680880R1422C0.36
LUADchr10102138669SilentNAL131L0.36
LUADchr10102141319SilentnovelL937L0.1
LUADchr10102149294Frame_Shift_DelnovelR1619Qfs*240.06
LUADchr10102147010Missense_MutationnovelA1340T0.18
LUADchr10102139897Missense_MutationnovelK463N0.22
LUADchr10102139125Missense_MutationnovelS206C0.24
LUADchr10102146955Missense_MutationNAW1321C0.13
LUADchr10102141133Missense_MutationnovelM875I0.3
LUADchr10102147228Silentrs762078980A1412A0.2
LUADchr10102148467Missense_MutationNAS1499F0.11
LUADchr10102140714Missense_MutationNAE736Q0.3
LUADchr10102140165Missense_Mutationrs746746156G553C0.39
LUADchr10102138618Splice_SiteNAX115_splice0.09
LUADchr10102141954Missense_MutationNAP1149Q0.26
LUADchr10102138915Missense_MutationNAE176K0.11
LUADchr10102139662Missense_MutationnovelS385C0.05
LUADchr10102144306Missense_MutationnovelG1203C0.09
LUADchr10102147020Missense_Mutationrs374891266P1343L0.25
LUADchr10102146950Nonsense_MutationNAR1320*0.16
LUADchr10102146676SilentNAL1228L0.29
LUADchr10102139725Frame_Shift_DelnovelL407Sfs*100.17
LUSCchr10102139310Missense_MutationnovelV268L0.13
LUSCchr10102141428Missense_Mutationrs757124491S974G0.23
LUSCchr10102148423SilentNAS1484S0.47
LUSCchr10102140404SilentnovelI632I0.19
LUSCchr10102141287Missense_MutationnovelP927S0.34
LUSCchr10102138914SilentNAP175P0.2
LUSCchr10102141795Missense_MutationNAA1096V0.41
LUSCchr10102138764Missense_MutationNAS163C0.12
LUSCchr10102138948Missense_MutationNAG187R0.36
LUSCchr10102149294Missense_MutationNAR1619L0.29
LUSCchr10102139236Missense_MutationNAR243H0.37
MESOchr10102147151Missense_Mutationrs201606390M1387V0.16
OVchr10102137870Silentrs574814323A58A0.45
OVchr101021500733'UTRnovel0.8
OVchr10102141923Missense_Mutationrs371010227R1139C0.71
OVchr10102148872Missense_MutationnovelE1558V0.17RRM_1
OVchr10102139503Missense_MutationnovelE332V0.1
OVchr10102147182Missense_MutationnovelA1397V0.15
OVchr10102141716Missense_MutationnovelV1070L0.15
OVchr10102140156Missense_MutationNAA550P0.76
OVchr10102139352Nonsense_MutationnovelE282*0.04
OVchr10102139353Missense_MutationnovelE282G0.04
OVchr10102147191Missense_Mutationrs748036766R1400Q0.47
PAADchr10102147267SilentnovelR1425R0.07
PAADchr10102140859Missense_MutationnovelE784A0.22
PAADchr10102141262SilentnovelA918A0.17
PAADchr10102148866Missense_Mutationrs370946381R1556Q0.15RRM_1
PCPGchr10102144262Missense_MutationnovelC1188Y0.37
PRADchr10102148883Missense_MutationnovelR1562G0.08RRM_1
PRADchr10102146885Missense_MutationNAY1298C0.21
PRADchr10102146894Missense_Mutationrs746405708R1301Q0.51
PRADchr10102141065Missense_MutationnovelP853S0.5
PRADchr10102148440Missense_Mutationrs201734122S1490L0.42
READchr10102133175Missense_MutationNAS36N0.22
READchr10102141606Missense_Mutationrs761599601S1033L0.23
READchr10102139878Missense_MutationNAR457Q0.19
READchr10102139558SilentNAG350G0.23
READchr10102140290Frame_Shift_InsNAT595Nfs*140.3
SARCchr10102141539Missense_MutationnovelV1011F0.47
SARCchr10102138625Missense_MutationnovelL117I0.56
SKCMchr10102138929SilentNAI180I0.43
SKCMchr10102141442SilentnovelT978T0.42
SKCMchr10102147100Missense_MutationNAL1370V0.29
SKCMchr10102148890Missense_MutationnovelS1564F0.34RRM_1
SKCMchr10102141212Missense_MutationNAL902F0.22
SKCMchr10102138029SilentNAS111S0.36
SKCMchr10102138695Missense_MutationNAS140F0.33
SKCMchr10102140703Missense_MutationNAS732F0.33
SKCMchr10102139798SilentNAP430P0.29
SKCMchr10102141850SilentNAP1114P0.33
SKCMchr10102141922SilentnovelA1138A0.3
SKCMchr10102140855Missense_MutationNAP783S0.19
SKCMchr10102147122Missense_MutationnovelS1377F0.47
SKCMchr10102149292Silentrs760085551G1618G0.37
SKCMchr10102149293Nonsense_MutationnovelR1619*0.36
SKCMchr10102140072SilentNAR522R0.47
SKCMchr10102139416Missense_MutationnovelS303F0.61
SKCMchr10102147370Missense_MutationnovelP1460S0.4
SKCMchr10102148641Missense_MutationNAR1522C0.26
SKCMchr10102141991SilentNAF1161F0.21
SKCMchr10102149997SilentNAL1655L0.22
SKCMchr10102141509Missense_MutationNAP1001S0.37
SKCMchr10102139877Nonsense_MutationnovelR457*0.17
SKCMchr10102139332Missense_Mutationrs780690524P275L0.32
SKCMchr10102141311Missense_MutationNAP935S0.19
SKCMchr10102147363SilentNAS1457S0.45
SKCMchr10102140384Missense_Mutationrs777545017P626S0.15
SKCMchr10102146985SilentnovelI1331I0.23
SKCMchr10102141701Missense_MutationnovelH1065Y0.09
SKCMchr10102140798Nonsense_MutationnovelQ764*0.3
SKCMchr10102147352Missense_MutationNAR1454W0.08
SKCMchr10102140529Missense_MutationNAV674A0.19
SKCMchr10102140088Missense_MutationNAA527V0.4
SKCMchr10102138948Missense_MutationNAG187W0.25
SKCMchr10102147142Missense_Mutationrs766885739R1384W0.21
SKCMchr10102139322Missense_MutationnovelP272S0.48
SKCMchr10102141269Missense_MutationNAP921S0.18
STADchr10102139721Missense_MutationnovelV405I0.24
STADchr10102139410Missense_MutationNAS301T0.29
STADchr10102148646SilentNAS1523S0.1
STADchr10102148884Missense_MutationNAR1562M0.28RRM_1
STADchr10102148423Silentrs558136788S1484S0.2
STADchr10102145037Missense_Mutationrs756230353Q1209R0.17
STADchr10102139689Missense_MutationNAL394P0.18
STADchr10102140524Missense_MutationnovelD672E0.11
STADchr10102147368Frame_Shift_DelNAP1461Hfs*790.33
STADchr10102141905In_Frame_InsnovelA1134dup0.18
STADchr10102141401Frame_Shift_DelnovelP966Lfs*1140.22
STADchr10102140614Frame_Shift_DelNAG704Vfs*300.27
STADchr10102140222Missense_Mutationrs752004219T572A0.06
STADchr10102148491Frame_Shift_DelNAR1509Afs*310.38
STADchr10102139324Silentrs756977690P272P0.12
STADchr10102149976Missense_MutationNAS1648P0.31
STADchr10102138919Missense_Mutationrs773022710R177H0.23
STADchr10102141306Missense_MutationNAG933D0.42
THCAchr10102148486SilentNAS1505S0.12
THCAchr10102139445Missense_MutationNAH313Y0.29
UCECchr10102137998Missense_MutationnovelS101C0.32
UCECchr10102149204Missense_MutationNAR1589H0.23RRM_1
UCECchr10102148641Missense_MutationNAR1522C0.04
UCECchr10102138918Missense_Mutationrs771663512R177C0.39
UCECchr10102143062SilentnovelL1172L0.39
UCECchr10102144270Missense_MutationnovelP1191T0.4
UCECchr10102141320Frame_Shift_Delrs768056539P940Hfs*60.35
UCECchr10102141867Missense_MutationNAA1120V0.33
UCECchr10102140189Missense_MutationnovelL561M0.33
UCECchr10102146942Missense_MutationnovelV1317A0.3
UCECchr10102147069SilentnovelS1359S0.49
UCECchr10102147291SilentnovelG1433G0.47
UCECchr10102140852Missense_MutationnovelL782F0.53
UCECchr10102138751Missense_MutationNAR159W0.26
UCECchr10102139807Silentrs745908303V433V0.3
UCECchr10102144257Missense_MutationNAK1186N0.16
UCECchr10102144265Missense_MutationnovelP1189H0.24
UCECchr10102147259Nonsense_MutationNAR1423*0.4
UCECchr10102148476Missense_Mutationrs752900930R1502H0.11
UCECchr10102141122Missense_MutationNAP872S0.35
UCECchr10102148820Nonsense_MutationnovelE1541*0.31
UCECchr10102147385Missense_MutationnovelW1465R0.31
UCECchr10102140745Missense_MutationnovelA746D0.3
UCECchr10102146737Missense_MutationnovelA1249T0.33
UCECchr10102147275Missense_Mutationrs112375415R1428H0.53
UCECchr10102148481Nonsense_MutationnovelR1504*0.33
UCECchr10102139455Missense_MutationNAC316Y0.33
UCECchr10102148440Missense_Mutationrs201734122S1490L0.3
UCECchr10102148866Missense_Mutationrs370946381R1556Q0.54RRM_1
UCECchr101021501413'UTRnovel0.23
UCECchr10102141985Missense_MutationnovelQ1159H0.42
UCECchr10102145067Missense_MutationnovelA1219V0.44
UCECchr10102139959Missense_Mutationrs200642961R484H0.52
UCECchr10102140959Missense_MutationnovelI817M0.7
UCECchr10102148686Missense_MutationnovelR1537C0.47
UCECchr10102148850Missense_MutationnovelP1551S0.4RRM_1
UCECchr10102149310Missense_MutationnovelK1624N0.35
UCECchr10102141319Frame_Shift_Insrs775630647P941Tfs*750.47
UCECchr10102149964Missense_MutationnovelS1644G0.46
UCECchr10102147076Nonsense_MutationNAQ1362*0.13
UCECchr10102138731Missense_MutationnovelS152L0.39
UCECchr101021501413'UTRnovel0.41
UCECchr10102148894Silentrs781016346V1565V0.36
UCECchr101021501193'UTRnovel0.33
UCECchr10102140222Missense_Mutationrs752004219T572A0.41
UCECchr10102148422Missense_MutationNAS1484L0.41
UCECchr10102140784Missense_MutationNAR759Q0.18
UCECchr10102141606Missense_Mutationrs761599601S1033L0.5
UCECchr10102139263Missense_MutationnovelV252E0.35
UCECchr10102147209Missense_Mutationrs776919435R1406Q0.6
UCECchr10102141888Missense_MutationnovelS1127N0.33
UCECchr10102148401Missense_MutationNAR1477Q0.31
UCECchr101021501513'UTRnovel0.29
UCECchr10102139807Silentrs745908303V433V0.15
UCECchr10102141097Missense_Mutationrs745337054Q863H0.22
UCECchr10102148857Missense_Mutationrs763766248R1553H0.38RRM_1
UCECchr10102141940Silentrs371094314S1144S0.12
UCECchr10102147306Silentrs758470365S1438S0.15
UCECchr10102147306Silentrs758470365S1438S0.26
UCECchr10102140614Frame_Shift_DelNAG704Vfs*300.32
UCECchr10102141306Missense_MutationNAG933D0.38
UCECchr10102145023SilentNAG1204G0.41
UCECchr10102148401Missense_MutationNAR1477Q0.44
UCECchr10102138717SilentnovelD147D0.38
UCECchr10102140107Missense_MutationNAE533D0.47
UCECchr10102138894Frame_Shift_InsnovelR172Lfs*450.42
UCECchr10102147373Missense_MutationnovelP1461S0.47
UCECchr10102139252SilentNAE248E0.31
UCECchr10102149294Missense_MutationNAR1619Q0.3
UCECchr10102137920Missense_MutationnovelD75G0.46
UCECchr10102138744SilentnovelV156V0.22
UCECchr10102140230SilentnovelL574L0.16
UCECchr10102141334Silentrs746788162T942T0.17
UCECchr10102143058SilentNAS1170S0.32
UCECchr10102147125Missense_MutationnovelP1378H0.19
UCECchr10102149948SilentnovelD1638D0.18
UCECchr10102140791SilentnovelQ761Q0.59
UCECchr10102149268SilentnovelQ1610Q0.24
UCECchr10102146903Frame_Shift_DelnovelP1306Qfs*70.07
UCECchr10102148656Missense_MutationNAY1527H0.34
UCECchr10102147332Missense_MutationnovelS1447L0.38
UCECchr10102148517Missense_Mutationrs760651788R1516W0.27
UCECchr10102148873Silentrs141475708E1558E0.41
UCECchr10102137869Missense_Mutationrs769958270A58V0.38
UCECchr10102139236Missense_MutationNAR243H0.21
UCECchr10102140385Missense_MutationnovelP626L0.41
UCECchr10102140975Missense_MutationnovelG823C0.29
UCECchr10102149189Missense_MutationnovelG1584D0.48RRM_1
UCSchr10102141514SilentnovelL1002L0.1
UCSchr10102140677SilentnovelI723I0.13
UCSchr10102139156Missense_MutationnovelE216D0.06
UCSchr10102139382Missense_MutationnovelM292L0.08

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.10.19593
CHOLDEL0.22220.048655
COADDEL0.17969.4741e-07
MESODEL0.26440.00015289
OVDEL0.38515.3759e-12
PAADDEL0.13590.169
READDEL0.23640.014135
THCADEL0.0140.011063
THYMDEL0.03250.10563
UCSDEL0.30360.1218

Survival Analysis
CancerP-value Q-value
KIRC0.00061

Kaplan-Meier Survival Analysis

SARC0.016

Kaplan-Meier Survival Analysis

MESO0.0015

Kaplan-Meier Survival Analysis

ACC0.00014

Kaplan-Meier Survival Analysis

UCS0.042

Kaplan-Meier Survival Analysis

SKCM0.00096

Kaplan-Meier Survival Analysis

ESCA0.049

Kaplan-Meier Survival Analysis

KIRP0.002

Kaplan-Meier Survival Analysis

COAD0.034

Kaplan-Meier Survival Analysis

PCPG0.023

Kaplan-Meier Survival Analysis

BLCA0.02

Kaplan-Meier Survival Analysis

LIHC0.041

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000148840 (Gene tree)
Gene ID
23082
Gene Symbol
PPRC1
Alias
PRC|KIAA0595|MGC74642
Full Name
PPARG related coactivator 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
17,340 bases
Position
chr10:102,132,994-102,150,333
Accession
30025
RBP type
canonical RBP
Summary
The protein encoded by this gene is similar to PPAR-gamma coactivator 1 (PPARGC1/PGC-1), a protein that can activate mitochondrial biogenesis in part through a direct interaction with nuclear respiratory factor 1 (NRF1). This protein has been shown to interact with NRF1. It is thought to be a functional relative of PPAR-gamma coactivator 1 that activates mitochondrial biogenesis through NRF1 in response to proliferative signals. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000359029RRM_1PF00076.224.6e-0811
ENSP00000399743RRM_1PF00076.221.2e-0711
ENSP00000278070RRM_1PF00076.221.5e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000462933PPRC1-204729--- (aa)--
ENST00000413464PPRC1-2034580XM_011539552ENSP000003997431400 (aa)XP_011537854E7EVG6
ENST00000489648PPRC1-205744--- (aa)--
ENST00000278070PPRC1-2015330XM_005269656ENSP000002780701664 (aa)XP_005269713Q5VV67
ENST00000370012PPRC1-2022163-ENSP00000359029631 (aa)-X6R7H2
ENST00000495914PPRC1-206564--- (aa)--
Gene Model
Click here to download ENSG00000148840's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000148840rs13882825810102142302CMean corpuscular hemoglobin27863252[0.019-0.032] unit increase0.02549926EFO_0004527
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000148840's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000148840PPRC196100.000ENSAMEG00000017685PPRC110084.952Ailuropoda_melanoleuca
ENSG00000148840PPRC15458.434ENSACIG00000022532pprc17168.702Amphilophus_citrinellus
ENSG00000148840PPRC16576.087ENSACAG00000012404PPRC15848.995Anolis_carolinensis
ENSG00000148840PPRC110097.152ENSANAG00000029448PPRC196100.000Aotus_nancymaae
ENSG00000148840PPRC196100.000ENSBTAG00000007427PPRC196100.000Bos_taurus
ENSG00000148840PPRC110096.209ENSCJAG00000017812PPRC196100.000Callithrix_jacchus
ENSG00000148840PPRC196100.000ENSCAFG00000010040PPRC110082.878Canis_familiaris
ENSG00000148840PPRC196100.000ENSCAFG00020010030PPRC199100.000Canis_lupus_dingo
ENSG00000148840PPRC195100.000ENSCHIG00000011471PPRC196100.000Capra_hircus
ENSG00000148840PPRC110083.043ENSCAPG00000016649-10082.726Cavia_aperea
ENSG00000148840PPRC19798.639ENSCPOG00000032149PPRC196100.000Cavia_porcellus
ENSG00000148840PPRC110096.677ENSCCAG00000014910PPRC196100.000Cebus_capucinus
ENSG00000148840PPRC110097.480ENSCATG00000029634PPRC196100.000Cercocebus_atys
ENSG00000148840PPRC19699.296ENSCLAG00000001364PPRC196100.000Chinchilla_lanigera
ENSG00000148840PPRC110097.468ENSCSAG00000005471PPRC110095.616Chlorocebus_sabaeus
ENSG00000148840PPRC110087.836ENSCHOG00000006574PPRC110081.579Choloepus_hoffmanni
ENSG00000148840PPRC110097.943ENSCANG00000037336PPRC110096.524Colobus_angolensis_palliatus
ENSG00000148840PPRC196100.000ENSCGRG00001011726Pprc181100.000Cricetulus_griseus_chok1gshd
ENSG00000148840PPRC190100.000ENSCGRG00000012760Pprc180100.000Cricetulus_griseus_crigri
ENSG00000148840PPRC196100.000ENSDNOG00000040730PPRC110081.339Dasypus_novemcinctus
ENSG00000148840PPRC196100.000ENSDORG00000001046Pprc110080.359Dipodomys_ordii
ENSG00000148840PPRC19597.872ENSETEG00000019254PPRC19291.961Echinops_telfairi
ENSG00000148840PPRC195100.000ENSEASG00005007583PPRC110083.492Equus_asinus_asinus
ENSG00000148840PPRC196100.000ENSECAG00000009482PPRC196100.000Equus_caballus
ENSG00000148840PPRC19883.923ENSEEUG00000014216PPRC18083.241Erinaceus_europaeus
ENSG00000148840PPRC196100.000ENSFCAG00000001238PPRC196100.000Felis_catus
ENSG00000148840PPRC19199.296ENSFDAG00000011496PPRC179100.000Fukomys_damarensis
ENSG00000148840PPRC1100100.000ENSGGOG00000002155PPRC110099.219Gorilla_gorilla
ENSG00000148840PPRC110087.855ENSHGLG00000002783-10086.593Heterocephalus_glaber_female
ENSG00000148840PPRC110087.855ENSHGLG00100017775-10086.593Heterocephalus_glaber_male
ENSG00000148840PPRC110092.393ENSSTOG00000002156-10092.710Ictidomys_tridecemlineatus
ENSG00000148840PPRC110080.696ENSJJAG00000005177-10079.386Jaculus_jaculus
ENSG00000148840PPRC196100.000ENSLAFG00000014232PPRC18587.437Loxodonta_africana
ENSG00000148840PPRC110097.638ENSMFAG00000038589PPRC110097.638Macaca_fascicularis
ENSG00000148840PPRC110097.480ENSMMUG00000001186PPRC196100.000Macaca_mulatta
ENSG00000148840PPRC110097.165ENSMNEG00000031603PPRC110096.043Macaca_nemestrina
ENSG00000148840PPRC110097.480ENSMLEG00000035092PPRC196100.000Mandrillus_leucophaeus
ENSG00000148840PPRC19755.368ENSMGAG00000010023PPRC17087.943Meleagris_gallopavo
ENSG00000148840PPRC19698.582ENSMAUG00000016674Pprc18098.582Mesocricetus_auratus
ENSG00000148840PPRC196100.000ENSMICG00000011794PPRC196100.000Microcebus_murinus
ENSG00000148840PPRC110083.360ENSMOCG00000018283-10080.673Microtus_ochrogaster
ENSG00000148840PPRC19170.154ENSMODG00000011467-6990.071Monodelphis_domestica
ENSG00000148840PPRC19698.592MGP_CAROLIEiJ_G0023026Pprc18199.291Mus_caroli
ENSG00000148840PPRC19698.592ENSMUSG00000055491Pprc18199.291Mus_musculus
ENSG00000148840PPRC19698.592MGP_PahariEiJ_G0014516Pprc18099.291Mus_pahari
ENSG00000148840PPRC19783.604MGP_SPRETEiJ_G0023947Pprc18199.291Mus_spretus
ENSG00000148840PPRC110081.016ENSMPUG00000016888PPRC196100.000Mustela_putorius_furo
ENSG00000148840PPRC19699.291ENSMLUG00000006217PPRC110081.606Myotis_lucifugus
ENSG00000148840PPRC196100.000ENSNGAG00000016516Pprc181100.000Nannospalax_galili
ENSG00000148840PPRC110096.098ENSNLEG00000014996PPRC110096.038Nomascus_leucogenys
ENSG00000148840PPRC15391.200ENSMEUG00000013795-5491.200Notamacropus_eugenii
ENSG00000148840PPRC110084.567ENSOPRG00000009346PPRC19191.558Ochotona_princeps
ENSG00000148840PPRC19986.603ENSODEG00000006985-9986.284Octodon_degus
ENSG00000148840PPRC16488.496ENSOANG00000007826-7190.654Ornithorhynchus_anatinus
ENSG00000148840PPRC196100.000ENSOCUG00000000510PPRC110082.088Oryctolagus_cuniculus
ENSG00000148840PPRC196100.000ENSOGAG00000016354PPRC110086.495Otolemur_garnettii
ENSG00000148840PPRC192100.000ENSOARG00000017509PPRC166100.000Ovis_aries
ENSG00000148840PPRC110097.477ENSPPAG00000032544PPRC110097.477Pan_paniscus
ENSG00000148840PPRC196100.000ENSPPRG00000004274PPRC196100.000Panthera_pardus
ENSG00000148840PPRC196100.000ENSPTIG00000013709PPRC196100.000Panthera_tigris_altaica
ENSG00000148840PPRC1100100.000ENSPTRG00000002883PPRC110099.099Pan_troglodytes
ENSG00000148840PPRC110097.323ENSPANG00000021042PPRC196100.000Papio_anubis
ENSG00000148840PPRC110085.737ENSPEMG00000016590-9983.079Peromyscus_maniculatus_bairdii
ENSG00000148840PPRC18388.435ENSPCIG00000029013PPRC17390.071Phascolarctos_cinereus
ENSG00000148840PPRC19099.291ENSPCAG00000008277PPRC19680.550Procavia_capensis
ENSG00000148840PPRC19699.291ENSPCOG00000025917PPRC19699.291Propithecus_coquereli
ENSG00000148840PPRC188100.000ENSPVAG00000004048PPRC181100.000Pteropus_vampyrus
ENSG00000148840PPRC19699.291ENSRNOG00000018561Pprc18199.291Rattus_norvegicus
ENSG00000148840PPRC110097.785ENSRBIG00000027711PPRC110096.367Rhinopithecus_bieti
ENSG00000148840PPRC110097.627ENSRROG00000044599PPRC110096.216Rhinopithecus_roxellana
ENSG00000148840PPRC110097.310ENSSBOG00000021902PPRC196100.000Saimiri_boliviensis_boliviensis
ENSG00000148840PPRC15764.463ENSSHAG00000008862-10063.912Sarcophilus_harrisii
ENSG00000148840PPRC189100.000ENSSARG00000004030PPRC19686.824Sorex_araneus
ENSG00000148840PPRC196100.000ENSSSCG00000010575PPRC110081.927Sus_scrofa
ENSG00000148840PPRC18658.217ENSTGUG00000009839-10061.326Taeniopygia_guttata
ENSG00000148840PPRC196100.000ENSTTRG00000014966PPRC110084.491Tursiops_truncatus
ENSG00000148840PPRC110091.325ENSUAMG00000028058PPRC196100.000Ursus_americanus
ENSG00000148840PPRC196100.000ENSUMAG00000023041PPRC196100.000Ursus_maritimus
ENSG00000148840PPRC196100.000ENSVVUG00000002566PPRC196100.000Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003712transcription coregulator activity21873635.IBAFunction
GO:0003723RNA binding22658674.HDAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0007005mitochondrion organization-TASProcess
GO:0008134transcription factor binding21873635.IBAFunction
GO:0030374nuclear receptor transcription coactivator activity21873635.IBAFunction
GO:0045944positive regulation of transcription by RNA polymerase II21873635.IBAProcess
GO:0051091positive regulation of DNA-binding transcription factor activity21873635.IBAProcess
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