EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
16799630ZNF185, an actin-cytoskeleton-associated growth inhibitory LIM protein in prostate cancer.Oncogene2007 Jan 4Zhang JS-
12873976Transcriptional silencing of zinc finger protein 185 identified by expression profiling is associated with prostate cancer progression.Cancer Res2003 Jul 15Vanaja DK-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchrX152959870SilentnovelF526F0.26
BLCAchrX152959878Missense_MutationNAR529L0.44
BLCAchrX152969443SilentNAL644L0.75
BLCAchrX152970470Missense_MutationnovelD667Y0.68
BRCAchrX152914777Silentrs782247502T34T0.41
BRCAchrX152920732Missense_MutationnovelP213T0.1
BRCAchrX1529712983'UTRnovel0.67
BRCAchrX152959761Missense_MutationNAR490K0.12
BRCAchrX152967236Missense_MutationnovelE622D0.33
BRCAchrX152914740Missense_MutationnovelR22H0.44
BRCAchrX152963883Missense_MutationNAA550V0.27
CESCchrX152959696Splice_Regionnovel0.12
CESCchrX152932909SilentnovelS352S0.06
CESCchrX152938112Missense_MutationNAR386M0.3
CESCchrX152917913Intronrs3733130880.27
CESCchrX152914780SilentnovelL35L0.33
CESCchrX152914788Missense_MutationnovelD38G0.45
CESCchrX152917972Intronnovel0.16
CESCchrX152945354Missense_MutationnovelQ432H0.18
CESCchrX152945344Missense_MutationnovelR429I0.22
CESCchrX152967172Missense_MutationnovelS601N0.06
CESCchrX152920717Nonsense_MutationNAQ208*0.33
CHOLchrX152917311Frame_Shift_InsnovelS98Tfs*230.55
COADchrX152932897Silentrs782288327G348G0.61
COADchrX152920729Missense_MutationnovelA212T0.13
COADchrX152931758Missense_MutationNAP334L0.39
COADchrX152932917Missense_MutationNAT355M0.13
COADchrX152932910Missense_Mutationrs201390993G353R0.07
COADchrX152945340Missense_MutationnovelP428S0.27
COADchrX152945383Missense_MutationnovelP442H0.06
COADchrX152928653SilentnovelE302E0.15
COADchrX152922213Nonsense_MutationnovelQ232*0.24
ESCAchrX152928636Missense_MutationnovelV297L0.51
ESCAchrX152928638SilentnovelV297V0.73
ESCAchrX152932949Missense_MutationnovelD366Y0.49
ESCAchrX152922749Missense_MutationNAR256Q0.34
ESCAchrX152936462Intronnovel0.88
GBMchrX1529144815'UTRnovel0.17
GBMchrX152965462SilentnovelF577F0.18
HNSCchrX152945310Missense_Mutationrs781800037G418R0.33
HNSCchrX152945441SilentnovelV461V0.6
HNSCchrX152920345Missense_MutationnovelG183D0.22
HNSCchrX152917135Missense_MutationnovelP77S0.13
KICHchrX152922810Splice_SitenovelX276_splice0.39
KIRCchrX152959727Missense_MutationNAV479L0.1
KIRCchrX152963873Missense_MutationNAT547S0.32
KIRCchrX152917284Splice_SiteNAX88_splice0.31
KIRCchrX152918134SilentNAT137T0.17
LGGchrX152914504SilentNAA5A0.59
LGGchrX152919055SilentnovelP168P0.12
LGGchrX152919056Missense_MutationnovelF169L0.12
LIHCchrX152941770Intronnovel0.44
LIHCchrX152945445Nonsense_MutationnovelR463*0.06
LIHCchrX152922219Missense_MutationnovelP234S0.43
LIHCchrX152945449Missense_MutationnovelE464G0.16
LIHCchrX152932918SilentNAT355T0.43
LIHCchrX152938145Missense_MutationNAA397V0.79
LIHCchrX152959778Missense_MutationnovelG496C0.29
LIHCchrX152917312SilentNAS97S0.26
LUADchrX152914497Missense_MutationnovelI3S0.38
LUADchrX152914762Missense_MutationNAM29I0.63
LUADchrX152915156SilentNAR59R0.37
LUADchrX152918982Splice_SitenovelX144_splice0.45
LUADchrX152918095SilentNAA124A0.5
LUADchrX152920396Missense_MutationnovelA200D0.17
LUADchrX152932917Missense_MutationNAT355M0.35
LUSCchrX152922744Silentrs140454766A254A0.64
LUSCchrX152919072Missense_MutationNAQ174R0.97
LUSCchrX152945329Missense_MutationnovelR424M0.75
LUSCchrX152919079Splice_RegionNAR176R0.12
LUSCchrX152970498Missense_MutationnovelR676P0.17
LUSCchrX152959805Missense_MutationNAT505S0.14
LUSCchrX152945278Missense_MutationnovelD407V0.94
OVchrX152963894Missense_MutationnovelQ554K0.12
OVchrX152970441Splice_Siters782445245X658_splice0.62
OVchrX152945428Missense_MutationNAS457Y0.55
PCPGchrX152917168Splice_RegionnovelR88R0.09
READchrX152920707Splice_Regionnovel0.2
SKCMchrX152922794Missense_MutationnovelG271E0.37
SKCMchrX152959848Missense_Mutationrs782746511S519N0.32
SKCMchrX152931776Missense_MutationNAR340K0.91
SKCMchrX152917145Missense_MutationNAR80K0.28
SKCMchrX152959882SilentnovelE530E0.33
SKCMchrX152959788Missense_MutationNAG499E0.18
SKCMchrX152932919Missense_MutationnovelG356S1
SKCMchrX152931720SilentnovelL321L0.29
SKCMchrX152931721Nonsense_MutationnovelQ322*0.29
SKCMchrX152959778Missense_MutationNAG496S0.6
SKCMchrX152959741Silentrs376631959V483V0.89
SKCMchrX152917323Missense_MutationnovelP101L0.99
SKCMchrX152920704Splice_Regionnovel0.44
STADchrX152969414Missense_Mutationrs782634433R634H0.58
STADchrX152959870SilentnovelF526F0.58
STADchrX152959706Missense_MutationNAT472S0.1
STADchrX152931735SilentNAA326A0.5
STADchrX152967205Missense_MutationNAK612T0.47
STADchrX152959826Missense_MutationnovelS512G0.56
STADchrX152917131Splice_Regionrs782048278R75R0.22
STADchrX152945373Missense_Mutationrs782678540A439T0.55
TGCTchrX152941804Intronnovel0.09
THCAchrX152970525Missense_MutationNAY685F0.1
THYMchrX152919025In_Frame_Insrs781814997E165dup0.53
UCECchrX152945309Silentrs782792023V417V0.39
UCECchrX152931715Nonsense_MutationnovelE320*0.29
UCECchrX152938074Splice_RegionnovelS373S0.11
UCECchrX152914748Missense_Mutationrs782480857V25I0.44
UCECchrX152917350Missense_MutationNAG110E0.31
UCECchrX152945411SilentNAQ451Q0.28
UCECchrX152970440Splice_Regionnovel0.3
UCECchrX152920339Missense_MutationnovelA181V0.45
UCECchrX152918122SilentnovelG133G0.12
UCECchrX152945302Missense_Mutationrs782162377T415I0.4
UCECchrX152959855SilentnovelS521S0.36
UCECchrX152965494Missense_MutationnovelS588F0.06
UCECchrX152917966Intronnovel0.44
UCECchrX152919037Missense_MutationnovelE162D0.08
UCECchrX152920714Missense_MutationNAT207A0.32
UCECchrX152965462SilentnovelF577F0.32
UCECchrX152917139Missense_MutationnovelS78N0.3
UCECchrX152959712Missense_MutationnovelF474V0.32
UCECchrX152969381Splice_SitenovelX623_splice0.44
UCECchrX152931679Missense_MutationnovelP308T0.33
UCECchrX152920729Missense_MutationnovelA212T0.15
UCECchrX152914769Nonsense_Mutationrs374950247R32*0.36
UCECchrX152915163Missense_Mutationrs368172395A62T0.6
UCECchrX152931689Missense_MutationnovelK311R0.15
UCECchrX152915171SilentnovelS64S0.24
UCECchrX152920733Missense_Mutationrs782183263P213L0.43
UCECchrX152932955Missense_Mutationrs187780276G368S0.45
UCECchrX152967207Missense_MutationnovelP613S0.45
UCECchrX152918024Intronnovel0.41
UCECchrX152932954Silentrs782786998I367I0.41
UCECchrX152914808Nonsense_MutationNAQ45*0.39
UCECchrX152928658Missense_MutationnovelM304T0.26
UCECchrX152945424Missense_Mutationrs782412570G456R0.24
UCECchrX152938100Missense_MutationnovelV382A0.35
UCECchrX152931689Missense_MutationnovelK311R0.28
UCECchrX152922226Missense_MutationnovelA236D0.29
UCECchrX152914781Missense_MutationNAK36E0.16
UCECchrX152969382Missense_MutationnovelR623S0.31
UCECchrX152914709Splice_SitenovelX12_splice0.36
UCECchrX152918002Intronnovel0.18
UCECchrX152965472Missense_Mutationrs781953510Y581H0.34
UCECchrX152922241Missense_MutationnovelT241I0.4
UCECchrX152970504Missense_MutationNAT678I0.28
UCECchrX152917137SilentnovelP77P0.34
UCECchrX152938164Splice_SitenovelX403_splice0.51
UCECchrX152915182Missense_MutationnovelA68D0.42
UCECchrX152931773Missense_MutationnovelA339V0.49

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.45560.024369
DLBCAMP0.14580.24013
HNSCAMP0.21460.0095371
KIRCAMP0.04170.12739
LIHCAMP0.14860.011319
LUSCAMP0.16770.08275
PAADAMP0.07610.041079
READAMP0.14550.14805
STADAMP0.11110.0021069
TGCTDEL0.06670.08422
THCADEL00.21991
UCSDEL0.28570.063955

Survival Analysis
CancerP-value Q-value
KIRC0.0033

Kaplan-Meier Survival Analysis

ACC0.0065

Kaplan-Meier Survival Analysis

HNSC0.018

Kaplan-Meier Survival Analysis

COAD0.045

Kaplan-Meier Survival Analysis

PAAD0.00016

Kaplan-Meier Survival Analysis

LAML0.044

Kaplan-Meier Survival Analysis

KICH0.0066

Kaplan-Meier Survival Analysis

UCEC0.036

Kaplan-Meier Survival Analysis

GBM0.032

Kaplan-Meier Survival Analysis

LUAD0.005

Kaplan-Meier Survival Analysis

UVM0.00011

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000147394 (Gene tree)
Gene ID
7739
Gene Symbol
ZNF185
Alias
SCELL
Full Name
zinc finger protein 185 with LIM domain
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
75,350 bases
Position
chrX:152,898,132-152,973,481
Accession
12976
RBP type
non-canonical RBP
Summary
Zinc-finger proteins bind nucleic acids and play important roles in various cellular functions, including cell proliferation, differentiation, and apoptosis. This gene encodes a LIM-domain zinc finger protein. The LIM domain is composed of two contiguous zinc finger domains, separated by a two-amino acid residue hydrophobic linker. The LIM domain mediates protein:protein interactions. Multiple alternatively spliced transcript variants encoding different isoforms have been identified.[provided by RefSeq, May 2010]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000370268ZNF185-2044305XM_005274738ENSP00000359291689 (aa)XP_005274795O15231
ENST00000535861ZNF185-2114421XM_005274730ENSP00000440847721 (aa)XP_005274787O15231
ENST00000436731ZNF185-2072120-ENSP00000391272552 (aa)-H7BZT5
ENST00000370270ZNF185-2052166-ENSP00000359293721 (aa)-O15231
ENST00000447792ZNF185-208554-ENSP00000401766185 (aa)-H7C1R1
ENST00000318529ZNF185-2023878-ENSP00000313919468 (aa)-O15231
ENST00000426821ZNF185-2063545-ENSP00000409121448 (aa)-H0Y704
ENST00000454925ZNF185-2103191-ENSP00000392984327 (aa)-O15231
ENST00000324823ZNF185-2033597-ENSP00000325307452 (aa)-O15231
ENST00000449285ZNF185-2094328XM_005274737ENSP00000395228690 (aa)XP_005274794O15231
ENST00000318504ZNF185-2014148XM_005274744ENSP00000312782630 (aa)XP_005274801O15231
ENST00000539731ZNF185-2124334XM_005274735ENSP00000444367692 (aa)XP_005274792O15231
Gene Model
Click here to download ENSG00000147394's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000147394's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005737cytoplasm-IEAComponent
GO:0005925focal adhesion-IEAComponent
GO:0008270zinc ion binding9268636.TASFunction
GO:0015629actin cytoskeleton-IEAComponent
GO:0051015actin filament binding-IEAFunction
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