EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchrX1066783083'UTRnovel0.46
BLCAchrX106639674Nonsense_MutationNAS574*0.31
BLCAchrX106669240Missense_MutationnovelD783N0.09
BLCAchrX1066120355'UTRnovel0.97
BLCAchrX106612333Missense_MutationnovelD85Y0.95
BLCAchrX106637806SilentnovelF485F0.53
BLCAchrX106612366Missense_MutationnovelD96Y0.22
BLCAchrX106612271Missense_MutationnovelS64L0.19
BLCAchrX106678240SilentnovelS850S0.45
BLCAchrX106669232Missense_MutationnovelS780F0.55
BRCAchrX106636568Missense_MutationNAL443F0.16
BRCAchrX106638135Intronnovel0.36
BRCAchrX106612242Missense_MutationNAM54I0.24
BRCAchrX106640643Missense_MutationnovelS609C0.1
BRCAchrX106612147Missense_MutationnovelE23K0.09
BRCAchrX106612600Nonsense_MutationNAQ174*0.29
BRCAchrX106622710Frame_Shift_DelnovelP235Lfs*50.14
BRCAchrX106625156Missense_MutationNAE285Q0.19
BRCAchrX106612374SilentNAT98T0.22
BRCAchrX106662159Missense_Mutationrs763255993R708Q0.21
BRCAchrX106678174SilentNAV828V0.3
BRCAchrX106636565Missense_MutationNAQ442H0.19
CESCchrX1066120055'UTRnovel0.08
CESCchrX106612265Frame_Shift_DelnovelS64Rfs*60.34
CESCchrX106633228Missense_MutationNAE427K0.53
CESCchrX106637994IntronNA0.34
CESCchrX1066119535'Flanknovel0.16
CESCchrX106625123Missense_MutationnovelV274M0.07
CESCchrX106637974Intronnovel0.11
CESCchrX106612147Missense_MutationnovelE23K0.1
CESCchrX106612149SilentnovelE23E0.09
CESCchrX106662079SilentnovelE681E0.09
CESCchrX106678205Missense_MutationnovelN839Y0.43
CESCchrX106625091Missense_MutationnovelT263S0.08
CESCchrX106633226Missense_MutationnovelP426Q0.08
CESCchrX106612592Missense_MutationnovelR171I0.57
CESCchrX106612094Missense_MutationnovelS5L0.12
CESCchrX106662194Missense_MutationNAD720N0.23
CHOLchrX106669304Missense_Mutationrs151274803R804Q0.29
CHOLchrX1066790173'UTRnovel0.11
COADchrX106640616Missense_MutationnovelR600Q0.46
COADchrX106632698Missense_MutationNAW351C0.56
COADchrX106612650SilentNAA190A0.36
COADchrX106639599Missense_MutationNAR549H0.15
COADchrX1066783893'UTRnovel0.56
COADchrX106612395Missense_MutationnovelQ105H0.11
COADchrX106625145Missense_MutationNAA281V0.22
COADchrX106636563Nonsense_MutationNAQ442*0.51
COADchrX106637954Intronnovel0.43
COADchrX106637914SilentnovelS521S0.11
COADchrX106633009Missense_Mutationrs570540571R389Q0.18
COADchrX106612169Missense_Mutationrs370255784P30L0.14
COADchrX1066119345'Flanknovel0.44
COADchrX106648363Missense_Mutationrs759731966P652L0.12
COADchrX106669267Missense_MutationNAS792G0.25
COADchrX1066120325'UTRnovel1
COADchrX106640615Missense_MutationNAR600W0.76
COADchrX106622746Missense_MutationnovelL247M0.04
COADchrX106637960Intronnovel0.11
COADchrX106612636Missense_MutationNAS186R0.51
GBMchrX106622698SilentnovelR231R0.21
GBMchrX106612337Missense_MutationNAT86M0.3
GBMchrX106637775Missense_MutationNAP475L0.81
GBMchrX1066120085'UTRnovel0.36
GBMchrX106612489Frame_Shift_DelnovelL137Ffs*70.15
GBMchrX106622782Missense_MutationnovelE259Q0.11
GBMchrX106612281SilentNAV67V0.65
GBMchrX106640707SilentnovelG630G0.19
GBMchrX1066783963'UTRnovel0.63
GBMchrX106612333Missense_MutationNAD85N0.24
HNSCchrX1066120335'UTRrs7754881670.08
HNSCchrX106636632Missense_MutationnovelG465R0.42
HNSCchrX106612233SilentnovelE51E0.54
HNSCchrX106637946Intronnovel1
HNSCchrX106639544Missense_MutationnovelA531S0.22
HNSCchrX106625178Frame_Shift_DelnovelG293Vfs*20.53
HNSCchrX106662247Frame_Shift_DelnovelK738Nfs*160.29
HNSCchrX106639614Missense_MutationnovelG554V0.67
LAMLchrX106632950Missense_MutationnovelM369I0.03
LGGchrX106662158Missense_Mutationrs775530156R708W0.4
LGGchrX106612140SilentNAP20P0.25
LGGchrX1066120625'UTRnovel0.43
LIHCchrX106636542Splice_SitenovelX435_splice0.52
LUADchrX106612381Missense_MutationNAD101H0.3
LUADchrX1066783543'UTRnovel0.46
LUADchrX106612158SilentnovelR26R0.11
LUADchrX106640586Missense_MutationnovelR590I0.22
LUADchrX106625226Missense_MutationnovelP308R0.05
LUADchrX106662159Missense_MutationnovelR708L0.08
LUADchrX106662160SilentnovelR708R0.09
LUADchrX106662209Nonsense_MutationNAQ725*0.21
LUADchrX106639587Missense_MutationNAR545M0.11
LUADchrX106612548SilentnovelG156G0.23
LUADchrX106612644SilentnovelY188Y0.13
LUADchrX106648364SilentNAP652P0.25
LUADchrX106625174SilentNAR291R0.4
LUSCchrX106622665Missense_MutationNAS220T0.34
LUSCchrX1066120755'UTRnovel0.28
LUSCchrX106612140SilentNAP20P0.9
LUSCchrX106637774Missense_MutationnovelP475S0.55
LUSCchrX106678207SilentnovelN839N0.62
LUSCchrX106640699Frame_Shift_InsnovelL628Hfs*140.14
LUSCchrX106633019Missense_MutationnovelK392N0.7
LUSCchrX106625220Missense_MutationNAS306I0.23
LUSCchrX106622750Missense_MutationnovelR248Q0.8
LUSCchrX106662263Missense_MutationnovelK743Q0.52
MESOchrX106625276Missense_Mutationrs780973470T325A0.9
OVchrX1066120175'UTRnovel0.38
OVchrX106612722Splice_RegionNAS214S0.39
OVchrX1066119985'UTRnovel0.13
OVchrX1066119955'UTRnovel0.36
OVchrX106612518SilentNAG146G0.55
OVchrX106612607Nonsense_MutationnovelP177Nfs*70.05
OVchrX106637894Missense_MutationnovelT515A0.37
OVchrX106625246Missense_MutationNAP315S0.56
OVchrX1066791293'UTRnovel0.7
OVchrX106612605SilentnovelE175E0.08
READchrX106612500SilentNAE140E0.43
READchrX106612537Missense_MutationNAV153I0.08
READchrX106632703Missense_MutationnovelL353R0.76
READchrX106639685Missense_MutationnovelR578W0.04
READchrX1066784403'UTRnovel1
READchrX106639647Missense_MutationNAS565N0.15
SARCchrX1066788633'UTRnovel0.5
SARCchrX106662268Silentrs140805762S744S0.41
SARCchrX106632651Missense_MutationnovelP336A0.48
SKCMchrX1066119515'Flanknovel0.15
SKCMchrX106662072Missense_MutationnovelR679T0.14
SKCMchrX106633237Missense_MutationnovelE430K0.12
SKCMchrX106648353Missense_MutationnovelG649R0.73
SKCMchrX106648354Missense_MutationnovelG649E0.72
SKCMchrX106633202Missense_MutationnovelV418G0.85
SKCMchrX106612349Missense_Mutationrs756257741P90L0.68
SKCMchrX106637988Intronnovel0.56
SKCMchrX106632642Nonsense_Mutationrs771312533R333*1
SKCMchrX106632952Missense_MutationNAP370L0.97
SKCMchrX106637784Missense_Mutationrs369412417Y478C0.24
SKCMchrX106632984SilentNAL381L0.62
SKCMchrX106637835Missense_MutationnovelS495F0.44
SKCMchrX106633129Splice_SiteNAX394_splice0.19
SKCMchrX106662243Missense_MutationNAP736L0.37
SKCMchrX106640687Missense_MutationnovelK624E0.17
SKCMchrX106612622Nonsense_MutationNAL181*0.3
SKCMchrX106612479SilentnovelR133R0.47
SKCMchrX106612480Missense_MutationnovelV134I0.48
SKCMchrX106622730SilentNAI241I0.75
STADchrX106637796Frame_Shift_InsnovelN484Kfs*70.33
STADchrX106662268Silentrs140805762S744S0.71
STADchrX106622650Splice_SiteNAX215_splice0.28
STADchrX106632654Missense_MutationNAT337A0.1
STADchrX106633157Missense_MutationnovelR403H0.2
STADchrX106612451Missense_MutationNAK124R0.03
STADchrX106640714Missense_MutationNAA633T0.08
STADchrX106637796Frame_Shift_InsnovelN484Kfs*70.12
UCECchrX106612568Missense_MutationNAS163Y0.31
UCECchrX106637805Missense_MutationNAF485C0.41
UCECchrX106662038Missense_MutationNAL668M0.27
UCECchrX106633006Missense_MutationNAQ388R0.25
UCECchrX106662097Missense_MutationNAE687D0.36
UCECchrX106678246Missense_Mutationrs759931639E852D0.37
UCECchrX106638051Intronnovel0.2
UCECchrX106612337Missense_MutationNAT86M0.58
UCECchrX106625208Missense_MutationnovelS302Y0.39
UCECchrX106633220Missense_MutationNAS424L0.44
UCECchrX106640699Missense_MutationNAL628I0.43
UCECchrX106648331SilentnovelP641P0.48
UCECchrX1066789333'UTRnovel0.1
UCECchrX106648352Missense_MutationNAK648N0.48
UCECchrX1066119555'Flanknovel0.32
UCECchrX106678220Missense_MutationNAY844N0.4
UCECchrX106662270Missense_MutationnovelA745V0.09
UCECchrX1066120185'UTRnovel0.15
UCECchrX106625189Missense_MutationNAL296I0.4
UCECchrX106638013IntronNA0.62
UCECchrX106662273Missense_Mutationrs757628984R746Q0.4
UCECchrX106640699Missense_MutationNAL628I0.3
UCECchrX106633141Missense_MutationNAD398N0.19
UCECchrX106639640Missense_MutationnovelP563S0.37
UCECchrX106622730SilentnovelI241I0.3
UCECchrX106612373Missense_MutationnovelT98M0.34
UCECchrX106648383Missense_MutationnovelN659D0.15
UCECchrX1066790523'UTRnovel0.2
UCECchrX106662160SilentNAR708R0.18
UCECchrX106612392SilentNAY104Y0.2
UCECchrX106639594Missense_MutationnovelQ547H0.08
UCECchrX106612649Missense_MutationnovelA190V0.08
UCECchrX106632689Missense_MutationnovelK348N0.1
UCECchrX106639598Missense_MutationNAR549C0.11
UCECchrX106678171SilentNAI827I0.22
UCECchrX106612085Missense_MutationNAS2Y0.64
UCECchrX106612320Missense_MutationNAE80D0.35
UCECchrX106636631Missense_MutationNAS464R0.38
UCECchrX106637776Silentrs145834842P475P0.43
UCECchrX106622730SilentnovelI241I0.45
UCECchrX106678175Missense_Mutationrs184295976G829S0.48
UCECchrX106612710SilentnovelE210E0.08
UCECchrX106637805Missense_MutationNAF485C0.47
UCECchrX106638100Intronnovel0.53
UCECchrX106662069Missense_MutationnovelD678G0.42
UCECchrX106632991Missense_MutationnovelF383C0.3
UCECchrX106640707SilentnovelG630G0.34
UCECchrX1066788213'UTRnovel0.33
UCECchrX1066783943'UTRnovel0.44
UCECchrX106625260SilentnovelQ319Q0.27
UCECchrX106612332Silentrs753421133R84R0.18
UCECchrX1066120095'UTRnovel0.33
UCECchrX106633014Missense_MutationnovelK391Q0.35
UCECchrX106662166SilentnovelF710F0.49
UCECchrX1066788953'UTRnovel0.26
UCECchrX1066120665'UTRnovel0.48
UCECchrX106637796Frame_Shift_InsnovelN484Kfs*70.4
UCECchrX106678172Missense_Mutationrs199864873V828I0.4
UCECchrX106662173Missense_MutationNAE713K0.33
UCECchrX106662243Frame_Shift_InsnovelP737Ffs*130.07
UCECchrX1066788103'UTRnovel0.47
UCECchrX106612333Missense_MutationNAD85N0.71
UCECchrX106622768Frame_Shift_DelnovelD254Gfs*200.06
UCECchrX106669322Missense_Mutationrs761429928A810V0.39
UCECchrX106612527SilentnovelC149C0.43
UCECchrX106622749Nonsense_MutationNAR248*0.48
UCECchrX106638013IntronNA0.28
UCECchrX106625189Missense_MutationNAL296I0.41
UCECchrX106638013IntronNA0.22
UCECchrX1066787753'UTRnovel0.33
UCECchrX1066788823'UTRnovel0.34
UCECchrX106612228Missense_MutationnovelL50I0.21
UCECchrX106622746Missense_MutationnovelL247M0.18
UCECchrX106632979Missense_MutationnovelG379D0.17
UCECchrX106662056Nonsense_MutationnovelK674*0.14
UCECchrX106633192Missense_MutationnovelP415S0.35
UCECchrX106633211Missense_MutationnovelF421C0.33
UCECchrX106648370Missense_MutationnovelM654I0.2
UCECchrX1066788823'UTRnovel0.63
UCECchrX106669260Missense_MutationnovelM789I0.25
UCECchrX106637893Missense_MutationnovelE514D0.42
UCECchrX106640699Missense_MutationNAL628I0.4
UCECchrX106638014Intronnovel0.1
UCECchrX106639685Missense_MutationnovelR578W0.08
UCECchrX106662207Missense_MutationnovelS724Y0.19
UCECchrX106612156Missense_MutationnovelR26W0.08
UCECchrX106612171Nonsense_MutationnovelG31*0.37
UCECchrX106632629SilentnovelI328I0.2
UCECchrX106640678Missense_MutationnovelL621M0.35
UCECchrX106637798Missense_MutationNAK483E0.19
UCECchrX1066119885'UTRNA0.43
UCECchrX106612331Missense_MutationNAR84H0.12
UCECchrX106636564Missense_MutationnovelQ442R0.27
UCECchrX1066783863'UTRnovel0.13
UCECchrX106612616Missense_MutationnovelR179M0.28
UCECchrX106625226Missense_MutationnovelP308L0.15
UCECchrX106640714Missense_MutationNAA633T0.28
UCECchrX106632965SilentNAI374I0.45
UCECchrX106625260Missense_MutationnovelQ319H0.06
UCECchrX106637781Missense_Mutationrs755480947T477M0.12
UCECchrX106612333Missense_MutationNAD85N0.23
UCECchrX106662125Missense_MutationnovelH697Y0.41
UCECchrX106637810Missense_MutationnovelQ487K0.39
UCECchrX106639620Missense_MutationnovelI556S0.35
UCECchrX106669226Missense_Mutationrs755021752R778Q0.47
UCECchrX1066120035'UTRnovel0.32
UCECchrX106612265Frame_Shift_DelnovelS64Rfs*60.22
UCECchrX106612480Missense_MutationnovelV134I0.07
UCECchrX106625092Splice_RegionNAT263T0.27
UCECchrX106625277Missense_MutationnovelT325I0.22
UCECchrX106640699Missense_MutationNAL628I0.41
UCECchrX1066788143'UTRnovel0.45
UCECchrX106625189Missense_MutationnovelL296F0.36
UCECchrX106637934Intronnovel0.08
UCECchrX106640662SilentnovelT615T0.4
UCSchrX106633221Silentrs372633270S424S0.81
UCSchrX106633220Missense_MutationNAS424L0.32

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRCAMP0.02650.12739
THCADEL00.21991

Survival Analysis
CancerP-value Q-value
SARC0.022

Kaplan-Meier Survival Analysis

ACC0.05

Kaplan-Meier Survival Analysis

HNSC0.007

Kaplan-Meier Survival Analysis

ESCA0.023

Kaplan-Meier Survival Analysis

KIRP0.00053

Kaplan-Meier Survival Analysis

PAAD0.0024

Kaplan-Meier Survival Analysis

BLCA0.0014

Kaplan-Meier Survival Analysis

KICH0.028

Kaplan-Meier Survival Analysis

UCEC0.003

Kaplan-Meier Survival Analysis

LIHC0.013

Kaplan-Meier Survival Analysis

LGG0.0015

Kaplan-Meier Survival Analysis

THCA0.048

Kaplan-Meier Survival Analysis

Drugs

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Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000147231 (Gene tree)
Gene ID
55086
Gene Symbol
RADX
Alias
FLJ14191|FLJ10178|CXorf57
Full Name
RPA1 related single stranded DNA binding protein, X-linked
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
67,514 bases
Position
chrX:106,611,930-106,679,443
Accession
25486
RBP type
non-canonical RBP
Summary
(RPA1 Related Single Stranded DNA Binding Protein, X-Linked) is a Protein Coding gene.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000421550RADX-2032880-ENSP00000405866566 (aa)-B1AQ74
ENST00000461251RADX-2042299-ENSP00000432238567 (aa)-Q6NSI4
ENST00000478395RADX-205425--- (aa)--
ENST00000497124RADX-206682--- (aa)--
ENST00000372544RADX-2013607-ENSP00000361623758 (aa)-Q6NSI4
ENST00000372548RADX-2023861-ENSP00000361628855 (aa)-Q6NSI4
Gene Model
Click here to download ENSG00000147231's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000147231rs4355941X106631560?Alcoholic chronic pancreatitis28754779[1.23-1.63]1.4151481EFO_1002013
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000147231's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003697single-stranded DNA binding28735897.IDAFunction
GO:0003723RNA binding22681889.HDAFunction
GO:0005515protein binding21516116.25036637.25416956.IPIFunction
GO:0005657replication fork28735897.IDAComponent
GO:2000042negative regulation of double-strand break repair via homologous recombination28735897.IDAProcess
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