EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
17963294Metastatic suppressor genes inactivated by aberrant methylation in gastric cancer.World J Gastroenterol2007 Nov 21Wang JF-
20651337Function and regulatory mechanisms of the candidate tumor suppressor receptor protein tyrosine phosphatase gamma (PTPRG) in breast cancer cells.Anticancer Res2010 JunShu ST-
21150880Tumour-specific methylation of PTPRG intron 1 locus in sporadic and Lynch syndrome colorectal cancer.Eur J Hum Genet2011 Marvan Roon EHdoi: 10.1038/ejhg.2010.187
18646686[Methylation of PTPRG gene and its regulation in gastric cancer].Zhonghua Zhong Liu Za Zhi2008 FebWang JF-
27602768MiR-19b suppresses PTPRG to promote breast tumorigenesis.Oncotarget2016 Sep 27Liu Mdoi: 10.18632/oncotarget.11799.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr362263025Intronnovel0.73
ACCchr362191517Missense_Mutationrs751693280T361M0.25
BLCAchr362195159Missense_MutationnovelM439K0.13
BLCAchr362273077Missense_MutationnovelT1105N0.21
BLCAchr362157199Missense_MutationnovelR272T0.07
BLCAchr361989652Missense_Mutationrs182010071T73M0.21
BLCAchr362203694SilentnovelT633T0.21
BLCAchr361562343Missense_MutationnovelS19F0.06
BLCAchr362124241Intronnovel0.55
BLCAchr362132610Silentrs533835628P208P0.11
BLCAchr362271470Missense_Mutationrs751271092E1033K0.36
BLCAchr362269097Silentrs143908630T979T0.53
BLCAchr362262897Splice_Regionnovel0.11
BLCAchr362203181Silentrs757781094A462A0.16
BLCAchr362168061Missense_Mutationrs762084994R311C0.15
BLCAchr362167974Missense_MutationnovelE282Q0.35
BLCAchr362003368Silentrs189356599D130D0.25
BLCAchr362275920SilentNAQ1171Q0.43
BLCAchr362003411Missense_Mutationrs749642322A145S0.52
BLCAchr361562326SilentnovelF13F0.62
BLCAchr362203923Missense_MutationNAD710H0.28
BLCAchr361989726Missense_MutationnovelE98Q0.13
BRCAchr362124311Intronnovel0.41
BRCAchr362203267Missense_MutationnovelS491F0.09
BRCAchr361989687Missense_MutationNAP85A0.19
BRCAchr362124402Intronnovel0.34
BRCAchr362078165Missense_MutationnovelM174I0.32
BRCAchr362078166Nonsense_MutationnovelQ175*0.32
BRCAchr362218936Missense_MutationNAL747F0.13
BRCAchr362271510Missense_Mutationrs768919412S1046L0.11
BRCAchr3622935113'UTRnovel0.41
BRCAchr362273743Missense_MutationNAG1122R0.14
BRCAchr362282757Missense_MutationNAQ1315E0.34
BRCAchr362255217Splice_SiteNAX853_splice0.21
BRCAchr361562334Missense_MutationnovelI16S0.13
BRCAchr362231224Splice_SiteNAX763_splice0.17
BRCAchr362269100SilentNAL980L0.18
BRCAchr362124244Intronnovel0.07
BRCAchr362003369Missense_MutationnovelD131H0.19
BRCAchr361562363Missense_MutationnovelC26G0.91
BRCAchr362003443Frame_Shift_InsNAN156Kfs*70.58
BRCAchr362132649Missense_MutationnovelL221F0.17
BRCAchr362203610Missense_MutationnovelK605N0.14
CESCchr362168114Silentrs747299296H328H0.18
CESCchr362078235Missense_MutationNAG198R0.26
CESCchr362168023Missense_MutationNAS298L0.44
CESCchr361989653Silentrs187568366T73T0.46
CESCchr362203780Missense_MutationnovelA662V0.25
CESCchr362124588Intronnovel0.33
CESCchr362281679SilentNAI1294I0.8
CESCchr362277551Missense_MutationNAG1213S0.39
CESCchr362191641SilentnovelS402S0.25
CESCchr362243896Missense_Mutationrs538902396P822L0.31
CESCchr362267753Nonsense_MutationNAW936*0.35
CHOLchr362124602Intronnovel0.07
CHOLchr3622936123'UTRnovel0.33
CHOLchr362282748Missense_Mutationrs754335459R1312W0.17
COADchr362281605Frame_Shift_InsnovelE1273*0.29
COADchr362218942Silentrs376160752F749F0.34
COADchr362243806Frame_Shift_InsNAC794Mfs*200.25
COADchr3622933223'UTRnovel0.23
COADchr362157118Missense_Mutationrs577302571S245F0.03
COADchr362203373Missense_MutationNAI526M0.51
COADchr362231261Missense_MutationnovelR775S0.27
COADchr362277039SilentnovelS1209S0.08
COADchr362124478Intronnovel0.29
COADchr362262961Intronnovel0.21
COADchr362267748Missense_MutationnovelF935V0.23
COADchr362277041Missense_Mutationrs375459395Y1210C0.4
COADchr362277045SilentnovelI1211I0.33
COADchr362203925SilentNAD710D0.33
COADchr362269133SilentNAV991V0.28
COADchr362271461Nonsense_MutationnovelG1030*0.22
COADchr362272960Missense_MutationNAR1066T0.15
COADchr362269135Missense_Mutationrs773599761R992H0.38
COADchr362273824Nonsense_MutationnovelR1149*0.22
COADchr362203200Missense_Mutationrs371587393D469N0.27
COADchr361989661Missense_MutationNAV76A0.24
COADchr362124508Intronnovel0.13
COADchr362282754Frame_Shift_DelnovelQ1315Sfs*120.24
COADchr362218879SilentNAS728S0.13
COADchr362267756Missense_MutationnovelR937S0.5
COADchr361989707Missense_MutationNAQ91H0.36
COADchr362262722Intronnovel0.37
COADchr362262635Intronnovel0.21
COADchr362262741Intronnovel0.21
COADchr361748961Missense_Mutationrs753443145D57N0.28
COADchr361562328Missense_MutationnovelL14P0.1
COADchr362292536Missense_Mutationrs765112298P1391S0.12
COADchr362262891Frame_Shift_InsnovelA885Efs*110.09
COADchr361989691Missense_Mutationrs776898840I86T0.12
DLBCchr362293191Missense_MutationnovelL1408F0.25
DLBCchr362262735Intronnovel0.32
DLBCchr362203634Silentrs150936656H613H0.14
ESCAchr362203855Missense_MutationNAG687E0.17
ESCAchr362203238Silentrs544886184T481T0.32
ESCAchr362292643Intronnovel0.6
ESCAchr362243855SilentnovelP808P0.41
ESCAchr3622936123'UTRnovel0.43
ESCAchr362124516Intronnovel0.77
ESCAchr362124534Intronnovel0.25
GBMchr362167976Missense_MutationnovelE282D0.08
GBMchr362203949Splice_RegionnovelP718P0.14
GBMchr361562357Missense_MutationnovelV24L0.76
GBMchr361989714Missense_Mutationrs764140516R94C0.21
GBMchr362203766Silentrs758300826G657G0.62
GBMchr362203260Frame_Shift_InsnovelF489Cfs*620.09
GBMchr362273790Missense_MutationnovelN1137K0.1
GBMchr362273780Missense_MutationnovelS1134I0.07
GBMchr362203180Missense_Mutationrs747382591A462V0.05
HNSCchr362078168SilentnovelQ175Q0.22
HNSCchr362269064Missense_MutationnovelE968D0.15
HNSCchr362275895Missense_MutationnovelK1163R0.1
HNSCchr362218880Missense_Mutationrs770912567R729C0.61
HNSCchr362275897Missense_MutationNAY1164H0.27
HNSCchr362167997SilentnovelT289T0.16
HNSCchr362273027Frame_Shift_DelnovelL1089Wfs*40.19
HNSCchr362273028SilentnovelL1089L0.19
HNSCchr362269050Missense_MutationnovelY964H0.23
HNSCchr362269083Missense_MutationnovelN975D0.56
HNSCchr362191510Missense_MutationnovelN359D0.2
HNSCchr362262950Intronnovel0.63
HNSCchr362203193SilentnovelS466S0.19
HNSCchr362203213Missense_MutationnovelI473T0.25
HNSCchr362271420Missense_MutationnovelR1016K0.19
KIRCchr362203659Missense_MutationnovelE622K0.53
KIRCchr362124234Intronnovel0.29
KIRPchr362293260Missense_MutationnovelI1431F0.47
KIRPchr362124362Intronnovel0.73
KIRPchr362124263Intronnovel0.51
KIRPchr362203416Missense_MutationNAA541P0.67
LAMLchr361742783Intronrs7575932230.59
LGGchr362282781Missense_MutationnovelD1323H0.1
LGGchr362168001Missense_MutationnovelE291K0.33
LGGchr362078166Nonsense_MutationnovelQ175*0.38
LGGchr362269153Missense_MutationnovelN998S0.27
LGGchr3622933823'UTRnovel0.13
LGGchr362124208Intronnovel0.39
LGGchr362262878Nonsense_MutationNAY880*0.09
LIHCchr362262538Intronnovel0.33
LIHCchr361989718Missense_MutationNAV95A0.13
LIHCchr361989718Missense_MutationNAV95A0.49
LUADchr362124279Intronnovel0.2
LUADchr361989781Nonsense_MutationnovelW116*0.12
LUADchr361989782Missense_MutationnovelW116C0.12
LUADchr362003490Missense_MutationnovelP171L0.16
LUADchr362203914Missense_MutationnovelF707L0.16
LUADchr362078211Missense_MutationNAA190T0.3
LUADchr362195127SilentNAR428R0.15
LUADchr361748960Silentrs150368253G56G0.67
LUADchr362132663Missense_MutationNAH226R0.4
LUADchr362003400Missense_MutationNAG141V0.26
LUADchr362281665Missense_MutationNAE1290K0.38
LUADchr362267753Nonsense_MutationNAW936*0.11
LUADchr362262745Intronnovel0.21
LUADchr362124570Intronnovel0.29
LUADchr362003384Nonsense_MutationnovelG136*0.3
LUADchr361562316Missense_MutationNAW10L0.32
LUADchr361562345Missense_MutationnovelV20L0.23
LUADchr362271407Missense_MutationNAR1012C0.11
LUADchr362276997SilentnovelA1195A0.19
LUADchr362255171Missense_MutationNAE839K0.42
LUSCchr362124297Intronnovel0.15
LUSCchr362124534Intronnovel0.14
LUSCchr362218936Missense_MutationnovelL747F0.74
LUSCchr362203384Missense_MutationnovelP530L0.14
LUSCchr362269146Missense_MutationnovelI996V0.34
LUSCchr361989760Missense_MutationnovelN109I0.2
LUSCchr362281630Missense_MutationnovelT1278I0.51
LUSCchr362281566Missense_MutationnovelE1257K0.14
LUSCchr362267736Missense_MutationNAT931A0.43
LUSCchr362262885Missense_MutationnovelI883V0.84
LUSCchr361989755Missense_MutationnovelF107L0.09
LUSCchr362132659Missense_MutationnovelV225L0.67
LUSCchr362201535Missense_MutationNAR453I0.32
LUSCchr361989788Missense_MutationNAK118N0.2
OVchr362271448Missense_MutationnovelQ1025H0.09
OVchr361562323Missense_MutationnovelL12F0.13
OVchr361748909Silentrs753540838H39H0.48
OVchr362203504Missense_MutationNAP570L0.21
OVchr361989665Missense_MutationNAS77R0.21
OVchr362203224Missense_MutationnovelS477T0.07
OVchr362203904Silentrs371158794R703R0.51
OVchr362203430Missense_MutationNAS545R0.32
OVchr362269090Frame_Shift_DelnovelI977Mfs*40.42
OVchr361562346Missense_MutationnovelV20G0.1
OVchr362195126Frame_Shift_DelnovelN429Tfs*260.41
OVchr3615622445'UTRnovel0.86
OVchr362262804Missense_MutationNAQ856K0.26
OVchr362132643Silentrs149393059H219H0.39
OVchr362273757Missense_MutationnovelE1126D0.49
PAADchr362282817Missense_MutationNAV1335I0.1
PAADchr3615622445'UTRnovel0.18
PAADchr362003401SilentnovelG141G0.2
PAADchr362168139Missense_MutationnovelP337S0.19
PAADchr362273803Missense_MutationnovelP1142S0.19
PAADchr362271421Missense_MutationnovelR1016S0.04
PRADchr362255175Missense_MutationNAL840R0.34
PRADchr362124375Intronnovel0.31
PRADchr362271408Missense_Mutationrs764384969R1012H0.1
PRADchr362157139Missense_MutationNAY252C0.04
PRADchr362168097Missense_Mutationrs142366357R323C0.29
PRADchr362267717Silentrs758155993T924T0.43
READchr362262666Intronnovel0.2
READchr362078234Silentrs374241237I197I0.18
READchr362262632Intronnovel0.29
READchr362269134Missense_Mutationrs772358512R992C0.38
READchr362277035Missense_MutationnovelA1208D0.34
READchr362078249Frame_Shift_InsnovelQ205Sfs*240.16
SARCchr3622933763'UTRnovel0.09
SARCchr361989766Missense_MutationnovelS111F0.24
SARCchr362262669Intronnovel0.38
SARCchr362292659Intronnovel0.35
SARCchr362262880Missense_MutationnovelI881S0.29
SARCchr362203653Nonsense_MutationnovelQ620*0.18
SKCMchr362168083Missense_Mutationrs750158140S318F0.31
SKCMchr362167997SilentnovelT289T0.29
SKCMchr362271519Missense_Mutationrs150212631R1049Q0.31
SKCMchr361748891SilentNAG33G0.25
SKCMchr362157095SilentNAV237V0.41
SKCMchr362078259Splice_SitenovelX205_splice0.22
SKCMchr362195131Missense_MutationnovelD430N0.3
SKCMchr362203855Missense_MutationNAG687E0.26
SKCMchr362267428Missense_MutationNAK892R0.27
SKCMchr362003357Missense_MutationNAL127F0.24
SKCMchr362124242Intronnovel0.25
SKCMchr362292648Intronnovel0.13
SKCMchr362293238SilentNAV1423V0.32
SKCMchr362191612Missense_MutationNAE393K0.47
SKCMchr362203377Missense_MutationnovelS528A0.28
SKCMchr362203905Missense_Mutationrs565961396G704R0.18
SKCMchr362203785Missense_MutationNAP664S0.45
SKCMchr362293161Missense_MutationnovelE1398K0.26
SKCMchr362157135Missense_MutationNAR251W0.35
SKCMchr362124361Intronnovel0.29
SKCMchr362218984Splice_SiteNAX763_splice0.26
SKCMchr362218879SilentNAS728S0.43
SKCMchr362203767Missense_Mutationrs185135949G658R0.54
SKCMchr362003422Silentrs140851159V148V0.35
SKCMchr361748909Silentrs753540838H39H0.44
SKCMchr362195088Silentrs574073526P415P0.48
SKCMchr362124576Intronnovel0.37
SKCMchr362157102Missense_MutationnovelD240Y0.38
SKCMchr362273833Nonsense_MutationNAK1152*0.26
SKCMchr362203382SilentnovelF529F0.6
SKCMchr362078235Missense_MutationNAG198R0.11
SKCMchr362157163Missense_MutationnovelP260L0.38
SKCMchr362203410Missense_MutationnovelP539S0.25
SKCMchr362203411Missense_Mutationrs754408710P539L0.26
SKCMchr362157076Missense_MutationnovelT231I0.44
SKCMchr362191605Missense_MutationnovelN390K0.38
SKCMchr362191606Missense_MutationnovelE391K0.38
SKCMchr362124468Intronnovel0.16
SKCMchr362271533Missense_MutationnovelG1054S0.35
SKCMchr362271534Missense_MutationnovelG1054D0.34
STADchr362262968Intronnovel0.25
STADchr362267798Silentrs557054933T951T0.11
STADchr361989712Missense_MutationNAA93V0.11
STADchr362203358SilentNAF521F0.19
STADchr362203824Frame_Shift_DelnovelT679Pfs*480.27
STADchr362124476Intronnovel0.13
STADchr362203414Missense_Mutationrs779012226T540M0.24
STADchr362203774Missense_MutationNAR660M0.3
STADchr362124498Intronnovel0.36
STADchr362195157Silentrs781007376T438T0.38
STADchr362267465Silentrs781276396S904S0.37
STADchr362195087Missense_MutationNAP415L0.07
STADchr362218854Frame_Shift_DelnovelN722Tfs*50.31
STADchr362277031Missense_MutationNAN1207D0.12
STADchr362262867Frame_Shift_DelnovelN878Tfs*70.21
STADchr362157092Silentrs776285819F236F0.28
STADchr362269068Missense_MutationnovelS970C0.26
STADchr362124285Intronnovel0.26
STADchr362168062Missense_MutationNAR311H0.25
STADchr361748965Missense_Mutationrs376043244P58L0.32
STADchr3615621695'UTRnovel0.38
STADchr362203456Missense_MutationNAA554V0.33
STADchr362267809Frame_Shift_DelnovelG957Efs*240.46
STADchr362203336Missense_Mutationrs756672469T514M0.23
STADchr362132658Silentrs753995594V224V0.29
STADchr362273059Missense_Mutationrs749173201R1099H0.18
STADchr362231300Missense_MutationNAE788D0.32
STADchr361989688Missense_MutationNAP85H0.07
STADchr362292709Intronnovel0.33
STADchr362269135Missense_Mutationrs773599761R992H0.17
STADchr362272943Splice_Regionnovel0.28
STADchr362267411Splice_RegionNAY886Y0.3
STADchr362218977Missense_MutationNAY761C0.41
STADchr361989723Missense_MutationNAE97K0.22
STADchr362272961Missense_MutationnovelR1066S0.16
THCAchr362275956In_Frame_InsnovelS1183_V1184insFKDII0.1
THCAchr362275958Missense_MutationnovelV1184D0.07
THYMchr362124525Intronnovel0.12
UCECchr362203678Missense_Mutationrs751593508S628L0.46
UCECchr362271502SilentNAR1043R0.4
UCECchr362231229Missense_MutationNAC765R0.36
UCECchr362281599Missense_MutationNAE1268K0.38
UCECchr362124245Intronnovel0.35
UCECchr362218942Silentrs376160752F749F0.33
UCECchr362292525Missense_MutationNAN1387S0.47
UCECchr362195131Missense_MutationnovelD430N0.11
UCECchr3622935123'UTRnovel0.3
UCECchr361989715Missense_Mutationrs751803837R94H0.06
UCECchr362243871Nonsense_MutationNAE814*0.12
UCECchr362262942Intronnovel0.28
UCECchr362281593Nonsense_MutationNAR1266*0.63
UCECchr362078211Missense_MutationNAA190T0.22
UCECchr362191641SilentnovelS402S0.43
UCECchr362218854Frame_Shift_DelnovelN722Tfs*50.6
UCECchr362293306Nonstop_Mutationnovel*1446Lext*40.17
UCECchr3622936123'UTRnovel0.39
UCECchr3622935383'UTRnovel0.25
UCECchr361748926Missense_MutationnovelS45I0.36
UCECchr362243862Missense_MutationnovelV811I0.36
UCECchr362267802Missense_MutationnovelL953F0.37
UCECchr362271430SilentnovelI1019I0.46
UCECchr362195113Missense_MutationnovelQ424K0.1
UCECchr362203766Silentrs758300826G657G0.42
UCECchr3622936123'UTRnovel0.46
UCECchr3622937283'UTRnovel0.41
UCECchr362267442Missense_Mutationrs199631360P897S0.18
UCECchr362191643Missense_Mutationrs778807385D403G0.31
UCECchr362282794Missense_MutationNAS1327N0.22
UCECchr362157203Silentrs371752893P273P0.5
UCECchr362281568SilentnovelE1257E0.33
UCECchr361989713Silentrs765996492A93A0.23
UCECchr362203369Missense_MutationNAG525V0.27
UCECchr361562348Missense_Mutationrs146419543L21F0.19
UCECchr362203584Nonsense_MutationnovelE597*0.1
UCECchr362262643Intronnovel0.38
UCECchr362267725Missense_MutationnovelP927H0.17
UCECchr362271443Missense_MutationnovelT1024A0.38
UCECchr362195157Silentrs781007376T438T0.42
UCECchr362203905Missense_Mutationrs565961396G704R0.35
UCECchr362282849SilentnovelG1345G0.37
UCECchr362263004Intronnovel0.65
UCECchr3622936123'UTRnovel0.27
UCECchr362262794Splice_Regionnovel0.36
UCECchr362262671Intronnovel0.33
UCECchr362275924Nonsense_MutationnovelE1173*0.48
UCECchr3622935113'UTRnovel0.43
UCECchr362132621Missense_MutationnovelS212Y0.42
UCECchr362168050Missense_MutationnovelR307Q0.42
UCECchr362276983Nonsense_MutationNAR1191*0.14
UCECchr362203921Missense_MutationnovelE709G0.32
UCECchr362203180Missense_Mutationrs747382591A462V0.33
UCECchr362203472SilentnovelL559L0.32
UCECchr362277606Missense_Mutationrs78612108T1231M0.21
UCECchr3622935973'UTRrs1429450460.33
UCECchr3622935983'UTRrs5678408990.44
UCECchr3622937383'UTRnovel0.39
UCECchr362132609Missense_Mutationrs61757808P208L0.28
UCECchr362195143Missense_Mutationrs751343662D434N0.37
UCECchr362203256Missense_MutationnovelF487L0.33
UCECchr3622936123'UTRnovel0.25
UCECchr362218881Missense_Mutationrs544447280R729H0.17
UCECchr3622936123'UTRnovel0.25
UCECchr362124386Intronnovel0.46
UCECchr362272978Missense_MutationnovelV1072A0.48
UCECchr3622935973'UTRrs1429450460.43
UCECchr3615622265'UTRnovel0.41
UCECchr362293178SilentnovelI1403I0.47
UCECchr3622937303'UTRnovel0.6
UCECchr362218853Frame_Shift_InsNAN722Kfs*450.35
UCECchr3622936123'UTRnovel0.4
UCECchr362078200Missense_MutationnovelS186I0.08
UCECchr362243813Frame_Shift_DelnovelQ796Rfs*670.38
UCECchr362262671Intronnovel0.35
UCECchr362255145Missense_MutationnovelV830A0.13
UCECchr3622934313'UTRnovel0.09
UCECchr3622936123'UTRnovel0.45
UCECchr361748878Missense_Mutationrs200002839A29V0.22
UCECchr362262671Intronnovel0.52
UCECchr362282792Missense_MutationnovelI1326M0.15
UCECchr362269073SilentnovelE971E0.4
UCECchr362276977Missense_Mutationrs759368265R1189C0.41
UCECchr361989714Missense_Mutationrs764140516R94C0.31
UCECchr362271451Nonsense_MutationNAW1026*0.27
UCECchr362195092Missense_MutationnovelS417G0.33
UCECchr362292542Missense_MutationNAV1393I0.39
UCECchr361748912Missense_MutationnovelE40D0.37
UCECchr362191546Missense_MutationnovelE371K0.32
UCECchr362218887Missense_MutationnovelA731D0.34
UCECchr3622936123'UTRnovel0.36
UCECchr362168129Missense_MutationnovelF333L0.41
UCECchr3622938073'UTRnovel0.25
UCECchr362276983Nonsense_MutationNAR1191*0.07
UCECchr362277616Missense_MutationnovelF1234L0.08
UCECchr362262908Intronnovel0.15
UCECchr3622934993'UTRnovel0.22
UCECchr361562295Missense_MutationnovelR3M0.21
UCECchr362124365Intronnovel0.33
UCECchr3622936053'UTRnovel0.22
UCECchr361989714Missense_MutationNAR94G0.38
UCECchr362203779Missense_MutationnovelA662T0.19
UCECchr362243890Missense_MutationNAP820H0.16
UCECchr362262807Missense_Mutationrs780222251R857C0.1
UCECchr362281619SilentnovelA1274A0.04
UCECchr362262863SilentNAK875K0.17
UCECchr362275948Frame_Shift_InsnovelN1181Ifs*140.05
UCECchr362292514Frame_Shift_Delrs747014614M1385*0.25
UCECchr3622936123'UTRnovel0.36
UCECchr361748928Missense_MutationNAA46T0.39
UCECchr362157171Missense_Mutationrs563123759E263K0.5
UCECchr362292543Missense_MutationNAV1393A0.55
UCECchr362203498Missense_Mutationrs201733832S568L0.27
UCECchr362003369Missense_Mutationrs752539487D131N0.35
UCECchr362243856Nonsense_Mutationrs747596725R809*0.3
UCECchr362262938Intronnovel0.43
UCECchr3622933313'UTRnovel0.1
UCECchr361989653Silentrs187568366T73T0.3
UCECchr362231268Missense_Mutationrs773451436R778C0.3
UCECchr362203237Missense_Mutationrs376270678T481M0.11
UCECchr362262608Intronnovel0.56
UCECchr362262928Intronrs2005772660.37
UCECchr362292428Missense_MutationnovelA1355S0.16
UCECchr3615622305'UTRnovel0.18
UCECchr362078162Splice_SitenovelX174_splice0.34
UCECchr362271408Missense_Mutationrs764384969R1012H0.32
UCECchr3622933893'UTRnovel0.41
UCECchr362124310Intronnovel0.36
UCECchr3622936123'UTRnovel0.3
UCECchr362218854Frame_Shift_DelnovelN722Tfs*50.47
UCECchr362262572Intronnovel0.42
UCECchr362277633Missense_MutationnovelD1240G0.35
UCECchr362269138Missense_Mutationrs771320696R993H0.47
UCECchr362293169Silentrs760713322Y1400Y0.31
UCECchr3622933503'UTRnovel0.52
UCSchr362203181Silentrs757781094A462A0.35
UCSchr362273770Nonsense_MutationnovelQ1131*0.75
UVMchr361562368Splice_SitenovelX28_splice0.1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.750.016387
HNSCDEL0.65331.1594e-06
LUADDEL0.33330.0021265
PAADDEL0.18480.030662
SARCDEL0.18680.0034746
SKCMDEL0.14170.13887
TGCTAMP0.180.23596
THYMDEL0.09760.037527
UVMDEL0.53750.09134

Survival Analysis
CancerP-value Q-value
SARC0.00023

Kaplan-Meier Survival Analysis

MESO0.0032

Kaplan-Meier Survival Analysis

SKCM0.044

Kaplan-Meier Survival Analysis

BRCA0.014

Kaplan-Meier Survival Analysis

KIRP0.02

Kaplan-Meier Survival Analysis

COAD0.046

Kaplan-Meier Survival Analysis

BLCA0.0096

Kaplan-Meier Survival Analysis

READ0.03

Kaplan-Meier Survival Analysis

LAML0.013

Kaplan-Meier Survival Analysis

KICH0.019

Kaplan-Meier Survival Analysis

LUAD0.045

Kaplan-Meier Survival Analysis

UVM0.049

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000144724 (Gene tree)
Gene ID
5793
Gene Symbol
PTPRG
Alias
RPTPG|PTPG
Full Name
protein tyrosine phosphatase receptor type G
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
736,045 bases
Position
chr3:61,561,569-62,297,613
Accession
9671
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP possesses an extracellular region, a single transmembrane region, and two tandem intracytoplasmic catalytic domains, and thus represents a receptor-type PTP. The extracellular region of this PTP contains a carbonic anhydrase-like (CAH) domain, which is also found in the extracellular region of PTPRBETA/ZETA. This gene is located in a chromosomal region that is frequently deleted in renal cell carcinoma and lung carcinoma, thus is thought to be a candidate tumor suppressor gene. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000485215PTPRG-206724--- (aa)--
ENST00000495879PTPRG-2073011--- (aa)--
ENST00000295874PTPRG-2014650XM_005265353ENSP000002958741416 (aa)XP_005265410P23470
ENST00000468576PTPRG-202854--- (aa)--
ENST00000475012PTPRG-2042635--- (aa)--
ENST00000475527PTPRG-2052694--- (aa)--
ENST00000474889PTPRG-2039021XM_017006961ENSP000004181121445 (aa)XP_016862450P23470
Gene Model
Click here to download ENSG00000144724's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000144724Lipids5.32831414289751E-617903299
ENSG00000144724Hip1.2101855243664E-517903296
ENSG00000144724Diabetes Mellitus, Type 27.185084E-517463248
ENSG00000144724Body Mass Index9.638e-00519060910
ENSG00000144724C-Reactive Protein2.522e-00519060910
ENSG00000144724Platelet Count9.881e-005-
ENSG00000144724Triglycerides9.325e-005-
ENSG00000144724Personality8.812e-005-
ENSG00000144724Waist Circumference9.8070000E-005-
ENSG00000144724Waist Circumference3.4690000E-006-
ENSG00000144724Arteries3.0990000E-005-
ENSG00000144724Blood Glucose9.5690000E-005-
ENSG00000144724Cell Adhesion Molecules3.8120000E-005-
ENSG00000144724Platelet Function Tests1.4338700E-005-
ENSG00000144724Platelet Function Tests1.5991000E-005-
ENSG00000144724Platelet Function Tests4.8800000E-006-
ENSG00000144724Platelet Function Tests1.3316800E-005-
ENSG00000144724Platelet Function Tests1.1550200E-005-
ENSG00000144724Platelet Function Tests2.3210200E-005-
ENSG00000144724Platelet Function Tests2.5084200E-005-
ENSG00000144724Platelet Function Tests2.2060100E-005-
ENSG00000144724Fluorescence8.2610000E-00624934506
ENSG00000144724Electrocardiography8E-720031603
ENSG00000144724Alzheimer Disease4E-826830138
ENSG00000144724Age of Onset4E-826830138
ENSG00000144724Stroke7E-726089329
ENSG00000144724Stroke6E-726089329
ENSG00000144724Schizophrenia2E-621926974
ENSG00000144724Homovanillic Acid5E-623319000
ENSG00000144724Hydroxyindoleacetic Acid5E-623319000
ENSG00000144724Stroke6E-726089329
ENSG00000144724Bacteremia1E-727236921
ENSG00000144724Stroke7E-726089329
ENSG00000144724Attention Deficit Disorder with Hyperactivity8E-727890468
ENSG00000144724Bipolar Disorder8E-727890468
ENSG00000144724Fuchs' Endothelial Dystrophy1E-620825314
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000144724rs7633054362153280?Bacteremia27236921[NR]1.36EFO_0003033
ENSG00000144724rs13061878361634560?Bipolar disorder or attention deficit hyperactivity disorder27890468EFO_0003888|EFO_0000289
ENSG00000144724rs7609954361650482TAlzheimer disease and age of onset26830138unit increase5.492EFO_0000249|EFO_0004847
ENSG00000144724rs704341361963062AStroke26089329[1.40-2.14]1.73EFO_0000712
ENSG00000144724rs704341361963062AStroke26089329[0.33-0.77] unit increase0.55EFO_0000712
ENSG00000144724rs704341361963062AIschemic stroke26089329[1.45-2.36]1.85HP_0002140
ENSG00000144724rs704341361963062AIschemic stroke26089329[0.38-0.86] unit increase0.62HP_0002140
ENSG00000144724rs652889361808380AQT interval20031603[0.09-0.21] unit decrease0.15EFO_0004682
ENSG00000144724rs35593266362126467AMetabolite levels (HVA/5-HIAA ratio)23319000unit increase0.2196EFO_0005131|EFO_0005132
ENSG00000144724rs40493361989275CMajor depressive disorder29317602[0.071-0.189] unit increase0.13EFO_0003761
ENSG00000144724rs4688651361651395AOsteoarthritis (self-reported)29559693[1.14-1.1]1.0981276EFO_0002506
ENSG00000144724rs11130874362079095?Schizophrenia21926974[1.06-1.14]1.1EFO_0000692
ENSG00000144724rs10490775362051050AFuchs's corneal dystrophy20825314[1.64-3.22]2.3Orphanet_98974
ENSG00000144724rs660323361776956?Peripheral arterial disease (traffic-related air pollution interaction)27082954[4.72-6.44]5.58EFO_0004265|EFO_0007908
ENSG00000144724rs6445258362126524?Body mass index30595370EFO_0004340
ENSG00000144724rs7621604361572044?Waist-hip ratio30595370EFO_0004343
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000144724's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0004725protein tyrosine phosphatase activity19167335.IDAFunction
GO:0005001transmembrane receptor protein tyrosine phosphatase activity8382771.TASFunction
GO:0005515protein binding19167335.21112398.25970784.IPIFunction
GO:0005887integral component of plasma membrane8382771.TASComponent
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway8382771.TASProcess
GO:0007420brain development-IEAProcess
GO:0010633negative regulation of epithelial cell migration21724833.IMPProcess
GO:0010977negative regulation of neuron projection development-IEAProcess
GO:0035335peptidyl-tyrosine dephosphorylation-IEAProcess
GO:0042802identical protein binding19167335.IPIFunction
GO:0070062extracellular exosome23533145.HDAComponent
GO:1903385regulation of homophilic cell adhesion21724833.IMPProcess
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us