EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
25404354SETDB1 accelerates tumourigenesis by regulating the WNT signalling pathway.J Pathol2015 MarSun QYdoi: 10.1002/path.4482
30309377Knockdown of SETDB1 inhibits breast cancer progression by miR-381-3p-related regulation.Biol Res2018 Oct 11Wu Mdoi: 10.1186/s40659-018-0189-0.
26471002Histone methyltransferase SETDB1 regulates liver cancer cell growth through methylation of p53.Nat Commun2015 Oct 16Fei Qdoi: 10.1038/ncomms9651.
25477335H3K9 histone methyltransferase, KMT1E/SETDB1, cooperates with the SMAD2/3 pathway to suppress lung cancer metastasis.Cancer Res2014 Dec 15Wu PCdoi: 10.1158/0008-5472.CAN-13-3572
26846621Quantitative proteomic study of human prostate cancer cells with different metastatic potentials.Int J Oncol2016 AprLi Qdoi: 10.3892/ijo.2016.3378
23770855Gene amplification of the histone methyltransferase SETDB1 contributes to human lung tumorigenesis.Oncogene2014 May 22Rodriguez-Paredes Mdoi: 10.1038/onc.2013.239
25070049MiR-7, inhibited indirectly by lincRNA HOTAIR, directly inhibits SETDB1 and reverses the EMT of breast cancer stem cells by downregulating the STAT3 pathway.Stem Cells2014 NovZhang Hdoi: 10.1002/stem.1795.
16682412The histone methyltransferase SETDB1 and the DNA methyltransferase DNMT3A interact directly and localize to promoters silenced in cancer cells.J Biol Chem2006 Jul 14Li H-
26840455Setdb1, a novel interactor of ΔNp63, is involved in breast tumorigenesis.Oncotarget2016 May 17Regina Cdoi: 10.18632/oncotarget.7089.
30105513Prognostic value of histone marks H3K27me3 and H3K9me3 and modifying enzymes EZH2, SETDB1 and LSD-1 in colorectal cancer.J Cancer Res Clin Oncol2018 NovCarvalho Sdoi: 10.1007/s00432-018-2733-2

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1150929992Missense_MutationnovelV96L0.2
BLCAchr1150961017SilentnovelL985L0.19
BLCAchr1150961126Missense_MutationnovelE1022K0.21
BLCAchr1150960985Missense_MutationnovelE975Q0.2
BLCAchr1150950963Missense_MutationNAE696K0.06
BLCAchr1150960730Missense_MutationnovelD890H0.09
BLCAchr1150960996SilentnovelK978K0.04
BLCAchr1150950552Missense_MutationNAP559S0.13
BLCAchr1150950895Missense_Mutationrs777467787Y673C0.29
BLCAchr1150960963SilentnovelG967G0.49
BLCAchr1150964314Missense_MutationNAE1276Q0.13
BLCAchr1150964244Splice_Regionnovel0.4
BLCAchr1150950963Missense_MutationNAE696Q0.21
BLCAchr1150927793Nonsense_MutationnovelQ27*0.09
BLCAchr1150949478SilentnovelL511L0.05
BLCAchr1150946973Missense_MutationnovelE410Q0.22
BLCAchr1150949430SilentnovelR495R0.34
BLCAchr1150960810SilentnovelF916F0.07
BLCAchr1150963118Missense_MutationnovelE1146Q0.19
BLCAchr1150950737SilentnovelK620K0.18
BLCAchr1150960760Nonsense_MutationNAE900*0.44
BLCAchr1150949129SilentnovelV425V0.34
BRCAchr1150964252Missense_MutationnovelI1255S0.3
BRCAchr1150927915Missense_MutationnovelW67C0.09
BRCAchr1150960675Missense_MutationNAE871D0.11
BRCAchr1150963013Nonsense_MutationnovelE1111*0.09
BRCAchr1150943936Missense_MutationnovelD298Y0.2
BRCAchr1150964048SilentnovelD1241D0.07
BRCAchr1150960598Missense_MutationNAG846C0.15
BRCAchr1150951439Missense_MutationNAS763C0.23
BRCAchr1150959190Frame_Shift_InsNAN782Kfs*70.42
BRCAchr1150962604Missense_Mutationrs751371356R1059Q0.15
BRCAchr1150949399Missense_MutationNAK485T0.2
BRCAchr1150963001Missense_MutationNAE1107Q0.25
BRCAchr1150950815SilentNAF646F0.11
BRCAchr11509645473'UTRnovel0.11
BRCAchr1150961182Nonsense_MutationnovelK1041Ffs*20.2
BRCAchr1150951439Missense_MutationNAS763F0.1
BRCAchr1150946942SilentnovelF399F0.06
BRCAchr1150949438Missense_MutationNAS498Y0.21
CESCchr1150964305Missense_MutationNAE1273Q0.33
CESCchr1150961017Missense_MutationnovelL985F0.09
CESCchr1150941374Missense_MutationNAQ165E0.25
CESCchr1150930028Missense_Mutationrs751646362R108W0.35
CESCchr1150945139IntronNA0.12
CESCchr1150945093Silentrs765231930V375V0.39
CESCchr1150963703Missense_MutationnovelD1211H0.06
CESCchr1150963109Missense_MutationNAD1143Y0.29
COADchr1150949172Missense_MutationNAG440S0.39
COADchr1150945148Intronrs5877156110.32
COADchr1150963642Silentrs759554112S1190S0.41
COADchr1150945265Intronnovel0.21
COADchr1150962651Missense_Mutationrs145309946R1075C0.14
COADchr1150963757Intronnovel0.22
COADchr1150941389Missense_MutationnovelA170S0.04
COADchr1150960829Missense_MutationNAR923W0.32
COADchr1150946985Nonsense_MutationnovelG414*0.07
COADchr1150959198Missense_MutationnovelR784H0.2
COADchr1150960890Missense_MutationnovelT943I0.28
COADchr1150945150Intronnovel0.35
COADchr1150964254Missense_MutationNAR1256W0.2
COADchr1150950923SilentNAI682I0.39
COADchr1150963653Missense_Mutationrs750158928R1194H0.4
COADchr1150949171Silentrs777376952T439T0.1
COADchr1150963528Splice_SiteNAX1153_splice0.48
COADchr1150942947Missense_MutationnovelK257E0.21
COADchr1150951084Missense_Mutationrs200603147R736Q0.44
COADchr1150927928Nonsense_MutationNAE72*0.39
COADchr1150939962Frame_Shift_DelnovelD147Tfs*110.26
COADchr1150944957Missense_Mutationrs200241875R330H0.33
COADchr1150964255Missense_MutationNAR1256Q0.31
COADchr1150950705Missense_MutationNAR610W0.28MBD
COADchr1150950720Missense_MutationnovelR615C0.31MBD
COADchr1150960593Missense_MutationnovelK844R0.38
COADchr1150944996Missense_MutationNAR343H0.15
ESCAchr1150945064Nonsense_MutationnovelR366*0.16
ESCAchr1150959280SilentnovelQ811Q0.33
ESCAchr1150963742Splice_Siters111660370X1223_splice0.2
ESCAchr1150951455SilentnovelK768K0.14
ESCAchr1150964289Silentrs770434872Y1267Y0.35
GBMchr1150964254Missense_MutationNAR1256W0.34
GBMchr1150960798SilentnovelK912K0.11
GBMchr1150963658Missense_MutationnovelN1196D0.08
GBMchr1150964253SilentnovelI1255I0.26
GBMchr1150962681Missense_MutationnovelS1085R0.2
GBMchr1150960965Missense_MutationnovelC968S0.03
GBMchr1150964282Missense_MutationnovelY1265S0.12
HNSCchr1150963595Missense_MutationnovelI1175V0.2
HNSCchr1150927777SilentnovelE21E0.15
HNSCchr1150963090Missense_MutationnovelI1136M0.23
HNSCchr1150962139Missense_MutationnovelD1047N0.28
HNSCchr1150950692Silentrs758639919L605L0.49
HNSCchr1150950963Missense_MutationNAE696K0.25
HNSCchr1150942995Missense_MutationnovelQ273E0.22
HNSCchr1150960712Missense_Mutationrs776369381D884Y0.3
HNSCchr1150950918Missense_MutationnovelD681N0.15
KIRCchr1150945239Intronnovel0.18
KIRCchr1150950954Missense_MutationNAC693R0.31
KIRPchr1150964314Missense_MutationNAE1276K0.26
KIRPchr1150927863In_Frame_DelnovelK50_C53delinsS0.31
KIRPchr1150950458Missense_MutationnovelR527S0.42
KIRPchr1150963615Missense_MutationnovelN1181K0.08
LAMLchr1150963677Missense_MutationnovelD1202V0.02
LGGchr1150963742Splice_Siters111660370X1223_splice0.43
LGGchr1150950472In_Frame_DelnovelT533del0.04
LGGchr1150943955Missense_MutationNAY304C0.35
LIHCchr1150942988SilentNAD270D0.09
LIHCchr1150964027Missense_MutationnovelN1234K0.42
LIHCchr1150960947Nonsense_MutationNAS962*0.07
LIHCchr1150927801SilentNAV29V0.08
LUADchr1150949250Missense_MutationnovelP466S0.31
LUADchr1150941394SilentnovelV171V0.24
LUADchr1150945171Intronnovel0.17
LUADchr1150950858Missense_MutationnovelD661Y0.16
LUADchr1150950859Missense_MutationnovelD661V0.15
LUADchr1150950455Splice_Regionnovel0.19
LUADchr1150963655Nonsense_MutationnovelK1195*0.1
LUADchr1150942664Frame_Shift_InsnovelL218Pfs*180.24
LUADchr1150960881Missense_MutationnovelS940F0.1
LUADchr1150943964Missense_MutationNAQ307L0.11
LUADchr1150960975SilentNAP971P0.1
LUADchr1150960760Nonsense_MutationNAE900*0.38
LUADchr1150963046Missense_MutationNAQ1122E0.39
LUADchr1150950881SilentnovelR668R0.09
LUSCchr1150959258Missense_MutationnovelR804L0.47
LUSCchr1150959219Missense_MutationnovelM791T0.29
LUSCchr1150962614SilentnovelG1062G0.41
LUSCchr1150963689Missense_MutationnovelS1206Y0.15
LUSCchr1150942679Missense_MutationnovelQ222K0.22
LUSCchr1150944943Missense_MutationnovelE325D0.43
LUSCchr1150927813SilentNAL33L0.36
LUSCchr1150963637Missense_MutationNAE1189Q0.09
LUSCchr1150946971Missense_MutationNAL409P0.31
LUSCchr1150960925Missense_MutationnovelP955S0.08
LUSCchr1150959309Missense_MutationNAD821G0.39
MESOchr1150950897Frame_Shift_DelNAK674Sfs*730.6
MESOchr1150962601Frame_Shift_InsnovelR1059Sfs*130.57
MESOchr1150950879Nonsense_MutationnovelR668*0.64
OVchr1150942630SilentNAL205L0.45
OVchr1150960998Missense_MutationnovelN979I0.11
OVchr1150949456Missense_MutationNAS504C0.28
OVchr1150950967Missense_MutationNAI697T0.12
OVchr1150941402In_Frame_DelnovelS175_Q178del0.05
OVchr1150942623Missense_Mutationrs371182642R203Q0.44
OVchr11509645493'UTRnovel0.19
OVchr1150945256Intronnovel0.25
OVchr1150950765Missense_MutationnovelP630A0.03MBD
OVchr1150964052Missense_MutationNAR1243C0.04
OVchr1150951468In_Frame_InsnovelC773delinsSACPVTEAGS0.4
PAADchr1150949393Nonsense_MutationnovelS483*0.13
PAADchr1150942562Splice_SitenovelX183_splice0.07
PRADchr1150950598Frame_Shift_InsnovelP575Tfs*180.29
PRADchr1150963642Silentrs759554112S1190S0.37
READchr1150942622Nonsense_MutationNAR203*0.13
READchr1150949521Missense_MutationNAY526H0.36
READchr1150959257Missense_MutationNAR804W0.43
SARCchr1150951085SilentnovelR736R0.12
SARCchr1150930012Missense_MutationnovelK102N0.07
SARCchr1150960740Missense_MutationnovelS893I0.06
SARCchr1150960860Missense_MutationnovelG933V0.08
SARCchr1150945151Intronnovel0.37
SARCchr1150950833Silentrs758794776F652F0.32
SKCMchr1150960802Nonsense_MutationnovelE914*0.19
SKCMchr1150950880Missense_Mutationrs199613890R668Q0.26
SKCMchr1150960736Missense_MutationNAN892D0.55
SKCMchr1150950783Missense_MutationNAR636W0.21
SKCMchr1150944924Missense_MutationNAK319M0.26
SKCMchr1150943006SilentnovelL276L0.48
SKCMchr1150949262Nonsense_MutationNAQ470*0.12
SKCMchr1150949257Missense_MutationnovelS468F0.36
SKCMchr1150930039SilentNAS111S0.46
SKCMchr1150930053Missense_MutationNAS116F0.17
SKCMchr1150960859Missense_MutationnovelG933S0.89
SKCMchr1150949262Nonsense_MutationNAQ470*0.59
SKCMchr1150927722Missense_Mutationrs761509888S3F0.35
SKCMchr1150961122SilentnovelE1020E0.08
SKCMchr1150949173Missense_MutationnovelG440D0.21
SKCMchr1150963635Missense_MutationnovelG1188E0.44
SKCMchr1150930102SilentnovelV132V0.39
STADchr1150949171Silentrs777376952T439T0.08
STADchr1150950730Missense_MutationNAN618S0.34MBD
STADchr1150950706Missense_MutationNAR610Q0.22MBD
STADchr1150930011Missense_MutationNAK102T0.58
STADchr1150943047Missense_MutationNAK290T0.31
STADchr1150961114Nonsense_MutationnovelR1018*0.23
STADchr1150950783Missense_MutationNAR636W0.26
STADchr1150959293Missense_MutationNAG816C0.33
STADchr1150964053Missense_MutationNAR1243H0.11
STADchr1150945148Intronrs5877156110.42
STADchr1150964047Missense_MutationNAD1241G0.31
STADchr1150942591SilentnovelL192L0.06
STADchr1150963558Missense_MutationNAK1162N0.04
STADchr1150941354Missense_MutationnovelR158K0.49
STADchr1150964254Missense_MutationNAR1256W0.4
STADchr1150960981Silentrs587757597S973S0.74
STADchr1150950571Missense_MutationNAR565H0.27
STADchr1150960906Frame_Shift_DelNAP950Qfs*160.35
STADchr1150942921Missense_MutationNAA248V0.12
STADchr1150960845Missense_MutationNAR928Q0.06
STADchr1150927884Missense_Mutationrs767529609R57H0.12
STADchr1150927885SilentnovelR57R0.12
STADchr1150959192Missense_MutationNAN782S0.06
STADchr1150961006Missense_Mutationrs760913907A982T0.18
STADchr1150949171Silentrs777376952T439T0.67
THCAchr1150963682Missense_MutationNAE1204K0.47
UCECchr1150927794Missense_MutationNAQ27R0.31
UCECchr1150945162IntronNA0.18
UCECchr1150944978Missense_MutationnovelV337A0.16
UCECchr1150949419Missense_MutationNAT492A0.37
UCECchr1150944968Nonsense_MutationnovelE334*0.04
UCECchr1150951070SilentNAC731C0.31
UCECchr1150950498Missense_MutationnovelA541S0.2
UCECchr1150963652Missense_Mutationrs764341148R1194C0.35
UCECchr11509644863'UTRnovel0.33
UCECchr1150943944SilentnovelG300G0.42
UCECchr1150945200Intronnovel0.45
UCECchr1150942663SilentnovelG216G0.24
UCECchr1150951008Missense_MutationnovelR711C0.33
UCECchr1150960873Silentrs587615660N937N0.41
UCECchr1150962611Silentrs374865769Y1061Y0.12
UCECchr1150963570SilentnovelG1166G0.33
UCECchr1150962980Missense_MutationnovelL1100M0.23
UCECchr1150950658Missense_MutationnovelY594C0.28
UCECchr1150959323Missense_MutationnovelG826S0.42
UCECchr1150963571Missense_MutationnovelF1167V0.21
UCECchr1150964020Missense_MutationNAV1232G0.44
UCECchr1150960963SilentNAG967G0.29
UCECchr1150964053Missense_MutationNAR1243H0.27
UCECchr1150950719SilentNAR614R0.34
UCECchr1150927957SilentNAL81L0.15
UCECchr1150962648Missense_Mutationrs147846533R1074C0.39
UCECchr1150942622Nonsense_MutationNAR203*0.49
UCECchr1150963623Missense_MutationnovelS1184Y0.38
UCECchr1150962604Missense_Mutationrs751371356R1059Q0.33
UCECchr1150963837Intronnovel0.46
UCECchr1150950901Frame_Shift_InsnovelY677Lfs*200.27
UCECchr1150963642Silentrs759554112S1190S0.35
UCECchr1150964033Silentrs746153161F1236F0.57
UCECchr1150959257Missense_MutationNAR804W0.47
UCECchr1150942622Nonsense_MutationNAR203*0.46
UCECchr1150941332Missense_MutationNAR151C0.08
UCECchr1150927927Missense_MutationnovelK71N0.28
UCECchr1150927928Missense_MutationnovelE72K0.28
UCECchr1150960666Missense_MutationNAE868D0.29
UCECchr1150949428Nonsense_MutationNAR495*0.44
UCECchr1150951001Missense_MutationnovelS708R0.35
UCECchr1150927770Missense_Mutationrs200557606S19F0.33
UCECchr1150949438Missense_MutationNAS498Y0.45
UCECchr1150963608Missense_MutationNAS1179L0.28
UCECchr1150960611Missense_MutationNAG850D0.57
UCECchr1150945290Intronnovel0.33
UCECchr1150963665Missense_MutationnovelR1198H0.49
UCECchr1150961094Missense_MutationnovelE1011G0.31
UCECchr1150963731Missense_MutationnovelR1220H0.18
UCECchr1150950479SilentnovelA534A0.39
UCECchr1150950880Missense_Mutationrs199613890R668Q0.38
UCECchr1150960777Missense_MutationnovelS905R0.33
UCECchr1150949420Missense_MutationnovelT492M0.28
UCECchr1150960683Missense_MutationnovelA874V0.17
UCECchr1150964052Missense_MutationNAR1243C0.31
UCECchr1150950861Missense_MutationnovelP662S0.22
UCECchr1150964309Missense_MutationnovelG1274D0.32
UCECchr1150962138Silentrs141513295D1046D0.03
UCECchr1150927847Missense_MutationnovelD45N0.14
UCECchr1150959315Missense_MutationnovelI823N0.27
UCECchr1150963681SilentNAG1203G0.17
UCECchr1150945147Intronrs7550417280.44
UCECchr1150927814Missense_MutationnovelG34C0.2
UCECchr1150964313Missense_MutationnovelK1275N0.14
UCECchr1150960906Frame_Shift_DelNAP950Qfs*160.33
UCECchr1150930057SilentnovelS117S0.22
UCECchr1150942949Missense_MutationnovelK257N0.18
UCECchr1150950815SilentNAF646F0.07
UCECchr1150959318Missense_MutationNAA824V0.3
UCECchr1150945261Intronnovel0.25
UCECchr1150950815SilentNAF646F0.36
UCECchr1150962604Missense_Mutationrs751371356R1059Q0.23
UCECchr1150963837Intronnovel0.42
UCECchr1150960906Frame_Shift_DelNAP950Qfs*160.32
UCECchr1150945239Intronnovel0.1
UCECchr1150945240Intronnovel0.01
UCECchr1150950737SilentnovelK620K0.04
UCECchr1150960913Missense_MutationnovelD951N0.17
UCECchr1150962642Nonsense_MutationNAG1072*0.23
UCECchr1150964289Silentrs770434872Y1267Y0.2
UCECchr1150945239Intronnovel0.07
UCECchr1150949258SilentnovelS468S0.38
UCECchr1150929974Missense_MutationNAT90A0.17
UCECchr1150946934Missense_MutationnovelP397A0.09
UCECchr1150964289Silentrs770434872Y1267Y0.18
UCECchr1150930072Missense_MutationnovelI122M0.4
UCECchr1150941423Missense_MutationnovelH181R0.5
UCECchr1150951009Missense_MutationnovelR711H0.17
UCECchr1150927846Silentrs144818367I44I0.28
UCECchr1150950900Missense_MutationnovelP675S0.33
UCSchr1150960857Missense_Mutationrs773137921R932Q0.38
UCSchr1150960704Frame_Shift_DelnovelS881Rfs*180.4
UCSchr1150949522Missense_MutationnovelY526C0.23

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.13330.11282
CESCAMP0.48143.2002e-05
DLBCDEL0.02080.0017831
ESCAAMP0.39130.0022446
KIRCAMP0.09280.059566
LUADAMP0.6242.2264e-28
LUSCAMP0.42711.6618e-06
PAADAMP0.21740.085665
PCPGAMP0.14810.00029562
READAMP0.26670.025154
SARCAMP0.34244.3422e-08
SKCMAMP0.4859.6912e-06
STADAMP0.26531.12e-06
TGCTAMP0.34670.088103
UCECAMP0.42863.1683e-22

Survival Analysis
CancerP-value Q-value
ACC0.00016

Kaplan-Meier Survival Analysis

KIRP0.019

Kaplan-Meier Survival Analysis

PCPG0.038

Kaplan-Meier Survival Analysis

LAML0.01

Kaplan-Meier Survival Analysis

KICH0.044

Kaplan-Meier Survival Analysis

UCEC0.0061

Kaplan-Meier Survival Analysis

GBM0.05

Kaplan-Meier Survival Analysis

LIHC0.0014

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000143379 (Gene tree)
Gene ID
9869
Gene Symbol
SETDB1
Alias
KG1T|KIAA0067|ESET|KMT1E|TDRD21
Full Name
SET domain bifurcated histone lysine methyltransferase 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
38,639 bases
Position
chr1:150,926,263-150,964,901
Accession
10761
RBP type
canonical RBP
Summary
This gene encodes a histone methyltransferase which regulates histone methylation, gene silencing, and transcriptional repression. This gene has been identified as a target for treatment in Huntington Disease, given that gene silencing and transcription dysfunction likely play a role in the disease pathogenesis. Alternatively spliced transcript variants of this gene have been described.[provided by RefSeq, Jun 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000432348MBDPF01429.195.3e-1211
ENSP00000271640MBDPF01429.195.4e-1211
ENSP00000357965MBDPF01429.195.4e-1211
ENSP00000436148MBDPF01429.190.0002211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20615470Characterization of HIV Tat modifications using novel methyl-lysine-specific antibodies.Methods2011 JanPagans Sdoi: 10.1016/j.ymeth.2010.07.001
25512341The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters.Cell Res2015 JanBao Xdoi: 10.1038/cr.2014.165
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000528749SETDB1-215527--- (aa)--
ENST00000498193SETDB1-2133854-ENSP000004323481259 (aa)-E9PRF4
ENST00000368964SETDB1-204548-ENSP00000357960111 (aa)-E9PAP1
ENST00000448029SETDB1-207668-ENSP00000409379156 (aa)-B0QZE6
ENST00000368962SETDB1-2021478XM_017002955ENSP00000357958397 (aa)XP_016858444Q15047
ENST00000533529SETDB1-216485--- (aa)--
ENST00000463774SETDB1-209570--- (aa)--
ENST00000368969SETDB1-2054370-ENSP000003579651290 (aa)-Q15047
ENST00000271640SETDB1-2014437XM_005245641ENSP000002716401291 (aa)XP_005245698Q15047
ENST00000423081SETDB1-206590-ENSP00000407831150 (aa)-X6RHV1
ENST00000459773SETDB1-208791--- (aa)--
ENST00000497314SETDB1-2122321--- (aa)--
ENST00000481219SETDB1-210623--- (aa)--
ENST00000368963SETDB1-2031045-ENSP00000357959249 (aa)-X6R732
ENST00000487584SETDB1-211558--- (aa)--
ENST00000534805SETDB1-2172043-ENSP00000436148636 (aa)-E9PQM8
ENST00000525956SETDB1-214587-ENSP00000435922163 (aa)-E9PS59
Gene Model
Click here to download ENSG00000143379's gene model file
Pathways
Pathway IDPathway NameSource
hsa00310Lysine degradationKEGG
hsa04550Signaling pathways regulating pluripotency of stem cellsKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000143379rs1486349171150943746GInterleukin-5 levels27989323[0.29-0.72] SD units increase0.5052EFO_0008185
ENSG00000143379rs354863141150929386ATMonocyte chemoattractant protein-1 levels27989323[0.048-0.11] SD units increase0.0791EFO_0004749
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000143379's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000143379SETDB19155.838ENSAPOG00000016228setdb1b9968.280Acanthochromis_polyacanthus
ENSG00000143379SETDB110096.000ENSAMEG00000001160SETDB110096.000Ailuropoda_melanoleuca
ENSG00000143379SETDB19270.109ENSACIG00000007359setdb1b9970.109Amphilophus_citrinellus
ENSG00000143379SETDB19752.167ENSAOCG00000005586setdb1b5668.722Amphiprion_ocellaris
ENSG00000143379SETDB19355.291ENSAPEG00000007774setdb1b5568.282Amphiprion_percula
ENSG00000143379SETDB19262.557ENSATEG00000023520setdb1b9969.355Anabas_testudineus
ENSG00000143379SETDB19976.583ENSAPLG00000013908SETDB110076.183Anas_platyrhynchos
ENSG00000143379SETDB110099.058ENSANAG00000001819SETDB110098.840Aotus_nancymaae
ENSG00000143379SETDB19957.755ENSACLG00000020489setdb1b9870.270Astatotilapia_calliptera
ENSG00000143379SETDB18467.000ENSAMXG00000016168setdb1b8174.286Astyanax_mexicanus
ENSG00000143379SETDB18444.444ENSAMXG00000010030setdb1a6766.165Astyanax_mexicanus
ENSG00000143379SETDB110096.365ENSBTAG00000000098SETDB110096.365Bos_taurus
ENSG00000143379SETDB110098.380ENSCJAG00000006972SETDB110098.380Callithrix_jacchus
ENSG00000143379SETDB110098.160ENSCAFG00000023501SETDB110096.448Canis_familiaris
ENSG00000143379SETDB110098.160ENSCAFG00020013596SETDB110096.373Canis_lupus_dingo
ENSG00000143379SETDB110096.365ENSCHIG00000010698SETDB110096.365Capra_hircus
ENSG00000143379SETDB110095.092ENSTSYG00000012646SETDB110095.594Carlito_syrichta
ENSG00000143379SETDB17992.857ENSCAPG00000013619SETDB110092.857Cavia_aperea
ENSG00000143379SETDB110095.706ENSCPOG00000001632SETDB110095.128Cavia_porcellus
ENSG00000143379SETDB110098.842ENSCCAG00000024882SETDB110098.842Cebus_capucinus
ENSG00000143379SETDB110095.588ENSCATG00000044888SETDB110095.588Cercocebus_atys
ENSG00000143379SETDB110095.092ENSCLAG00000000242SETDB110095.227Chinchilla_lanigera
ENSG00000143379SETDB18899.298ENSCSAG00000018034SETDB110099.298Chlorocebus_sabaeus
ENSG00000143379SETDB110090.798ENSCHOG00000004013SETDB110085.913Choloepus_hoffmanni
ENSG00000143379SETDB19978.899ENSCPBG00000008716SETDB110078.380Chrysemys_picta_bellii
ENSG00000143379SETDB19995.190ENSCANG00000036388SETDB19896.819Colobus_angolensis_palliatus
ENSG00000143379SETDB110092.266ENSCGRG00001010822Setdb110091.802Cricetulus_griseus_chok1gshd
ENSG00000143379SETDB110091.957ENSCGRG00000005953Setdb110091.493Cricetulus_griseus_crigri
ENSG00000143379SETDB18963.415ENSCSEG00000002988setdb1b9869.189Cynoglossus_semilaevis
ENSG00000143379SETDB19068.586ENSCVAG00000008877setdb1b9968.586Cyprinodon_variegatus
ENSG00000143379SETDB19755.556ENSDARG00000099021setdb1b9956.978Danio_rerio
ENSG00000143379SETDB110096.077ENSDNOG00000007754SETDB110096.077Dasypus_novemcinctus
ENSG00000143379SETDB110092.819ENSDORG00000006830Setdb110092.896Dipodomys_ordii
ENSG00000143379SETDB17047.697ENSEBUG00000005735setdb1b9546.755Eptatretus_burgeri
ENSG00000143379SETDB110096.613ENSEASG00005002061SETDB110096.613Equus_asinus_asinus
ENSG00000143379SETDB110096.933ENSECAG00000023954SETDB110096.690Equus_caballus
ENSG00000143379SETDB110087.127ENSEEUG00000015825SETDB18395.798Erinaceus_europaeus
ENSG00000143379SETDB18876.331ENSELUG00000013948setdb1b9876.331Esox_lucius
ENSG00000143379SETDB18351.124ENSELUG00000006204-7853.134Esox_lucius
ENSG00000143379SETDB110095.706ENSFCAG00000009655SETDB110093.963Felis_catus
ENSG00000143379SETDB110096.319ENSFDAG00000021515SETDB110095.286Fukomys_damarensis
ENSG00000143379SETDB19066.842ENSFHEG00000022195setdb1b9967.895Fundulus_heteroclitus
ENSG00000143379SETDB18776.471ENSGMOG00000005993setdb1b9376.471Gadus_morhua
ENSG00000143379SETDB19973.485ENSGALG00000024051SETDB19273.349Gallus_gallus
ENSG00000143379SETDB19159.732ENSGAFG00000012805setdb1b9960.667Gambusia_affinis
ENSG00000143379SETDB18772.674ENSGACG00000011675setdb1b9373.837Gasterosteus_aculeatus
ENSG00000143379SETDB19978.915ENSGAGG00000005348SETDB110078.533Gopherus_agassizii
ENSG00000143379SETDB1100100.000ENSGGOG00000016308SETDB110099.768Gorilla_gorilla
ENSG00000143379SETDB19957.659ENSHBUG00000004618setdb1b9953.457Haplochromis_burtoni
ENSG00000143379SETDB110096.319ENSHGLG00000011098SETDB110095.128Heterocephalus_glaber_female
ENSG00000143379SETDB110096.319ENSHGLG00100009789SETDB110094.582Heterocephalus_glaber_male
ENSG00000143379SETDB18868.108ENSHCOG00000014567setdb1b9868.649Hippocampus_comes
ENSG00000143379SETDB18965.842ENSIPUG00000004536setdb19872.067Ictalurus_punctatus
ENSG00000143379SETDB110096.933ENSSTOG00000006770SETDB110094.153Ictidomys_tridecemlineatus
ENSG00000143379SETDB18766.842ENSKMAG00000001197setdb1b9167.368Kryptolebias_marmoratus
ENSG00000143379SETDB18867.027ENSLBEG00000025862setdb1b9667.568Labrus_bergylta
ENSG00000143379SETDB19969.306ENSLACG00000011159SETDB110068.830Latimeria_chalumnae
ENSG00000143379SETDB110095.092ENSLAFG00000004006SETDB110094.266Loxodonta_africana
ENSG00000143379SETDB1100100.000ENSMFAG00000042328SETDB110099.535Macaca_fascicularis
ENSG00000143379SETDB1100100.000ENSMMUG00000023235SETDB110099.303Macaca_mulatta
ENSG00000143379SETDB1100100.000ENSMNEG00000017223SETDB110099.458Macaca_nemestrina
ENSG00000143379SETDB1100100.000ENSMLEG00000033050SETDB110099.535Mandrillus_leucophaeus
ENSG00000143379SETDB19468.889ENSMAMG00000015176setdb1b8569.444Mastacembelus_armatus
ENSG00000143379SETDB19957.755ENSMZEG00005016099setdb1b9870.270Maylandia_zebra
ENSG00000143379SETDB19970.076ENSMGAG00000001018SETDB19770.328Meleagris_gallopavo
ENSG00000143379SETDB18892.391ENSMAUG00000021391Setdb110092.391Mesocricetus_auratus
ENSG00000143379SETDB110098.160ENSMICG00000000425SETDB110096.530Microcebus_murinus
ENSG00000143379SETDB110091.782ENSMOCG00000017407Setdb110091.859Microtus_ochrogaster
ENSG00000143379SETDB18964.706ENSMMOG00000016162setdb1b9968.984Mola_mola
ENSG00000143379SETDB110088.415ENSMODG00000018821SETDB19087.539Monodelphis_domestica
ENSG00000143379SETDB18775.460ENSMALG00000007801setdb1b9761.841Monopterus_albus
ENSG00000143379SETDB110091.201MGP_CAROLIEiJ_G0025342Setdb110090.666Mus_caroli
ENSG00000143379SETDB110090.840ENSMUSG00000015697Setdb110090.458Mus_musculus
ENSG00000143379SETDB110095.238ENSMPUG00000004298SETDB110090.992Mustela_putorius_furo
ENSG00000143379SETDB110092.711ENSMLUG00000010486SETDB110092.407Myotis_lucifugus
ENSG00000143379SETDB110092.638ENSNGAG00000020151Setdb110091.409Nannospalax_galili
ENSG00000143379SETDB19855.962ENSNBRG00000003147setdb1b9970.811Neolamprologus_brichardi
ENSG00000143379SETDB110099.387ENSNLEG00000009996SETDB110095.951Nomascus_leucogenys
ENSG00000143379SETDB110080.185ENSMEUG00000000555-10079.954Notamacropus_eugenii
ENSG00000143379SETDB110085.276ENSMEUG00000006544-8889.084Notamacropus_eugenii
ENSG00000143379SETDB110093.865ENSOPRG00000015349SETDB110092.344Ochotona_princeps
ENSG00000143379SETDB110095.743ENSODEG00000012471SETDB110095.588Octodon_degus
ENSG00000143379SETDB18869.730ENSONIG00000006454setdb1b9958.650Oreochromis_niloticus
ENSG00000143379SETDB110096.319ENSOCUG00000003642SETDB110094.367Oryctolagus_cuniculus
ENSG00000143379SETDB19466.337ENSORLG00000010602setdb1b9868.557Oryzias_latipes
ENSG00000143379SETDB18070.130ENSORLG00020008638setdb1b9760.797Oryzias_latipes_hni
ENSG00000143379SETDB19464.251ENSORLG00015014543setdb1b9866.834Oryzias_latipes_hsok
ENSG00000143379SETDB19166.667ENSOMEG00000009457setdb1b9969.792Oryzias_melastigma
ENSG00000143379SETDB110090.178ENSOGAG00000010320SETDB110090.023Otolemur_garnettii
ENSG00000143379SETDB110095.917ENSOARG00000020880SETDB110095.917Ovis_aries
ENSG00000143379SETDB110099.768ENSPPAG00000041015SETDB110099.768Pan_paniscus
ENSG00000143379SETDB110096.285ENSPPRG00000005462SETDB110096.285Panthera_pardus
ENSG00000143379SETDB110095.706ENSPTIG00000014233SETDB110095.201Panthera_tigris_altaica
ENSG00000143379SETDB1100100.000ENSPTRG00000001267SETDB110099.768Pan_troglodytes
ENSG00000143379SETDB1100100.000ENSPANG00000020214SETDB110096.827Papio_anubis
ENSG00000143379SETDB19856.936ENSPKIG00000010963setdb1b10056.780Paramormyrops_kingsleyae
ENSG00000143379SETDB16373.723ENSPSIG00000008407SETDB18579.567Pelodiscus_sinensis
ENSG00000143379SETDB19392.703ENSPEMG00000010553Setdb110092.046Peromyscus_maniculatus_bairdii
ENSG00000143379SETDB19852.022ENSPMAG00000001573setdb1b10051.558Petromyzon_marinus
ENSG00000143379SETDB19956.875ENSPFOG00000004623-9956.217Poecilia_formosa
ENSG00000143379SETDB19954.808ENSPFOG00000004429setdb1b9770.270Poecilia_formosa
ENSG00000143379SETDB19160.667ENSPLAG00000017117setdb1b9962.000Poecilia_latipinna
ENSG00000143379SETDB19467.553ENSPLAG00000019076-9968.617Poecilia_latipinna
ENSG00000143379SETDB19467.553ENSPMEG00000006468setdb1b9968.617Poecilia_mexicana
ENSG00000143379SETDB19467.553ENSPREG00000017459setdb1b9968.617Poecilia_reticulata
ENSG00000143379SETDB110099.613ENSPPYG00000000887SETDB110099.613Pongo_abelii
ENSG00000143379SETDB110093.281ENSPCAG00000002527SETDB110093.824Procavia_capensis
ENSG00000143379SETDB110098.160ENSPCOG00000027869SETDB110096.981Propithecus_coquereli
ENSG00000143379SETDB110097.546ENSPVAG00000004355SETDB19394.191Pteropus_vampyrus
ENSG00000143379SETDB18969.730ENSPNYG00000003997setdb1b9070.270Pundamilia_nyererei
ENSG00000143379SETDB18963.850ENSPNAG00000021617setdb1b5270.652Pygocentrus_nattereri
ENSG00000143379SETDB110090.728ENSRNOG00000021143Setdb110090.345Rattus_norvegicus
ENSG00000143379SETDB1100100.000ENSRBIG00000042359SETDB110099.458Rhinopithecus_bieti
ENSG00000143379SETDB1100100.000ENSRROG00000032628SETDB110099.303Rhinopithecus_roxellana
ENSG00000143379SETDB110098.773ENSSBOG00000028608SETDB110098.537Saimiri_boliviensis_boliviensis
ENSG00000143379SETDB110086.718ENSSHAG00000012701SETDB110086.244Sarcophilus_harrisii
ENSG00000143379SETDB18969.849ENSSFOG00015022183setdb19957.734Scleropages_formosus
ENSG00000143379SETDB19154.660ENSSMAG00000015398setdb1b9965.672Scophthalmus_maximus
ENSG00000143379SETDB19264.929ENSSDUG00000007513setdb1b9968.750Seriola_dumerili
ENSG00000143379SETDB19156.423ENSSLDG00000015209setdb1b9969.072Seriola_lalandi_dorsalis
ENSG00000143379SETDB19976.923ENSSPUG00000002969SETDB110075.969Sphenodon_punctatus
ENSG00000143379SETDB110096.319ENSSSCG00000006645SETDB110095.212Sus_scrofa
ENSG00000143379SETDB19473.740ENSTGUG00000004684SETDB110073.021Taeniopygia_guttata
ENSG00000143379SETDB19166.845ENSTRUG00000014641setdb1b9866.845Takifugu_rubripes
ENSG00000143379SETDB19953.483ENSTNIG00000008065setdb1b9955.046Tetraodon_nigroviridis
ENSG00000143379SETDB19396.336ENSTBEG00000009306SETDB110096.336Tupaia_belangeri
ENSG00000143379SETDB18994.800ENSTTRG00000006966SETDB18994.800Tursiops_truncatus
ENSG00000143379SETDB110098.160ENSUAMG00000026724SETDB110095.458Ursus_americanus
ENSG00000143379SETDB110098.160ENSUMAG00000003141SETDB110091.448Ursus_maritimus
ENSG00000143379SETDB110098.160ENSVPAG00000005440SETDB17897.842Vicugna_pacos
ENSG00000143379SETDB110098.160ENSVVUG00000011637SETDB110096.142Vulpes_vulpes
ENSG00000143379SETDB19969.977ENSXETG00000008936setdb19969.748Xenopus_tropicalis
ENSG00000143379SETDB19856.933ENSXCOG00000019497setdb1b9072.316Xiphophorus_couchianus
ENSG00000143379SETDB19567.553ENSXMAG00000016600setdb1b9968.085Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003682chromatin binding27029610.IDAFunction
GO:0005515protein binding16682412.17066076.17577629.20871592.21170338.26022416.27029610.27732843.29774127.IPIFunction
GO:0005634nucleus-IDAComponent
GO:0005634nucleus27732843.IMPComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005694chromosome-IEAComponent
GO:0005737cytoplasm27732843.IMPComponent
GO:0005829cytosol-IDAComponent
GO:0005886plasma membrane-IDAComponent
GO:0007265Ras protein signal transduction24623306.IMPProcess
GO:0008270zinc ion binding-IEAFunction
GO:0018024histone-lysine N-methyltransferase activity14536086.IDAFunction
GO:0033273response to vitamin-IEAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0045471response to ethanol-IEAProcess
GO:0045869negative regulation of single stranded viral RNA replication via double stranded DNA intermediate-ISSProcess
GO:0046974histone methyltransferase activity (H3-K9 specific)14536086.IDAFunction
GO:0051567histone H3-K9 methylation-IEAProcess
GO:0090309positive regulation of methylation-dependent chromatin silencing24623306.27732843.IMPProcess
GO:0090309positive regulation of methylation-dependent chromatin silencing-ISSProcess
GO:1990841promoter-specific chromatin binding24623306.IDAFunction
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