EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
15351706Interaction of the BMPR-IA tumor suppressor with a developmentally relevant splicing factor.Biochem Biophys Res Commun2004 Oct 8Nishanian TG-
29397868SF3B4 as an early-stage diagnostic marker and driver of hepatocellular carcinoma.BMB Rep2018 FebShen Q-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr11499278765'UTRnovel0.36
BLCAchr1149923625Missense_MutationnovelR398W0.8
BLCAchr1149926024Missense_MutationNAS242F0.4
BLCAchr1149923709Missense_MutationnovelP370S0.76
BRCAchr1149926722Missense_MutationNAF120L0.46RRM_1
BRCAchr11499278475'UTRnovel0.09
BRCAchr1149923867Frame_Shift_Insrs782357237R354Pfs*1320.36
BRCAchr1149923867Missense_MutationNAR354L0.35
BRCAchr11499278405'UTRnovel0.23
BRCAchr1149926722SilentNAF120F0.25
BRCAchr1149926755Frame_Shift_DelNAP109Rfs*30.14RRM_1
COADchr1149923662SilentNAY385Y0.15
COADchr1149925880Missense_MutationnovelH290R0.2
COADchr1149923697Missense_MutationNAR374C0.33
COADchr1149923670Frame_Shift_Delrs387907187H383Mfs*750.28
COADchr11499278335'UTRnovel0.22
COADchr1149923558Missense_MutationnovelG420D0.14
COADchr11499278145'UTRnovel0.32
COADchr1149923868Frame_Shift_DelnovelR354Efs*260.11
COADchr1149923670Frame_Shift_Delrs387907187H383Mfs*750.44
COADchr1149923867Frame_Shift_InsNAR354Pfs*270.49
COADchr1149923568Missense_MutationnovelP417T0.05
COADchr11499278465'UTRnovel0.37
COADchr1149923988Missense_MutationNAH314Y0.27
COADchr1149926504Missense_MutationNAR193Q0.22
COADchr1149923845SilentnovelP361P0.3
COADchr1149923670Frame_Shift_Delrs387907187H383Mfs*750.31
ESCAchr1149923867Frame_Shift_Insrs782357237R354Pfs*1320.26
ESCAchr1149926529Missense_MutationnovelE185K0.22
GBMchr1149926391Missense_MutationnovelG231W0.23
GBMchr1149927169Nonsense_MutationnovelQ54*0.04
GBMchr1149926647SilentnovelA145A0.11
GBMchr1149926608SilentnovelA158A0.09
GBMchr1149927181Missense_MutationnovelT50S0.27
GBMchr1149926465Missense_MutationnovelR206H0.24
LIHCchr1149926536SilentNAS182S0.19
LIHCchr11499278005'UTRnovel0.11
LIHCchr1149923927Missense_MutationnovelP334R0.28
LUADchr1149923889Missense_MutationnovelP347T0.21
LUADchr1149926475Nonsense_MutationnovelQ203*0.43
LUADchr1149923958Missense_MutationNAA324S0.21
LUADchr1149926390Missense_MutationNAG231V0.65
LUADchr1149926504Missense_MutationNAR193P0.17
LUADchr1149923897Missense_MutationNAP344R0.15
LUADchr1149925853Missense_MutationnovelG299D0.28
LUADchr1149923707Silentrs782435530P370P0.39
LUADchr1149926541Missense_MutationNAD181H0.44
LUSCchr1149923573Missense_MutationnovelR415Q0.13
LUSCchr1149926730Missense_MutationnovelD118Y0.32RRM_1
LUSCchr1149926848SilentNAK78K0.24
LUSCchr1149926622Missense_MutationnovelA154P0.15
LUSCchr1149926741Missense_MutationnovelK114R0.28RRM_1
LUSCchr1149926692SilentnovelP130P0.15
LUSCchr1149923648Missense_MutationNAR390L0.68
OVchr1149927196Missense_MutationnovelP45S0.03
OVchr1149923667Missense_MutationNAG384R0.52
OVchr1149927203Frame_Shift_InsNAH43Pfs*210.39
OVchr1149925839Missense_MutationNAP304S0.21
PRADchr1149926375Splice_SitenovelX236_splice0.57
SKCMchr1149924013Splice_RegionNAG305G0.42
SKCMchr1149926479SilentnovelL201L0.25
SKCMchr1149926384Missense_MutationnovelP233L0.41
SKCMchr1149926385Missense_MutationnovelP233S0.41
SKCMchr1149923562Nonsense_MutationNAR419*0.29
SKCMchr1149927226Nonsense_MutationNAQ35*0.16
SKCMchr1149926692SilentnovelP130P0.53
SKCMchr11499235223'UTRnovel0.55
SKCMchr1149923609Missense_MutationNAP403L0.48
SKCMchr1149923580Missense_Mutationrs781816117P413S0.26
SKCMchr1149923578SilentnovelP413P0.38
SKCMchr1149923688Missense_MutationNAP377S0.21
STADchr1149926446SilentNAA212A0.25
STADchr1149926541Missense_MutationNAD181N0.65
STADchr1149923598Missense_MutationNAT407S0.46
STADchr1149926824SilentNAV86V0.29
STADchr1149925847Missense_MutationnovelM301T0.32
STADchr1149926885Missense_MutationNAD66G0.16RRM_1
STADchr1149927236Missense_MutationNAE31D0.08
STADchr1149926377Splice_RegionNAP235P0.22
STADchr1149926526Missense_MutationNAR186C0.38
UCECchr1149925918Silentrs781792461S277S0.48
UCECchr1149926508Missense_MutationnovelE192K0.5
UCECchr1149923648Missense_MutationnovelR390Q0.28
UCECchr1149926465Missense_MutationnovelR206H0.44
UCECchr1149923620Silentrs782240590G399G0.43
UCECchr1149925971Missense_MutationnovelA260T0.19
UCECchr1149926562Missense_MutationnovelV174I0.25
UCECchr1149923867Frame_Shift_Insrs782357237R354Pfs*1320.41
UCECchr1149927238Missense_MutationnovelE31K0.26
UCECchr11499234463'UTRnovel0.09
UCECchr11499235253'UTRnovel0.17
UCECchr11499235133'UTRnovel0.42
UCECchr1149923557SilentnovelG420G0.15
UCECchr1149926562Missense_MutationnovelV174I0.13
UCECchr1149923867Missense_MutationnovelR354Q0.22
UCECchr1149924015Splice_SitenovelX305_splice0.34
UCECchr1149925928Missense_MutationnovelG274A0.14
UCECchr1149923696Missense_MutationnovelR374H0.38
UCECchr1149923868Frame_Shift_DelnovelR354Efs*260.28
UCECchr1149926583Missense_MutationNAL167I0.19
UCECchr1149926408Missense_MutationNAV225A0.27

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.14440.11282
DLBCDEL0.02080.0017831
ESCAAMP0.38040.0022446
KIRCAMP0.09280.059566
LUSCAMP0.40321.6618e-06
PAADAMP0.21740.085665
PCPGAMP0.14810.00029562
READAMP0.25450.025154
SARCAMP0.33464.3422e-08
SKCMAMP0.46329.6912e-06
TGCTAMP0.34670.088103

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

MESO0.00085

Kaplan-Meier Survival Analysis

ACC0.00013

Kaplan-Meier Survival Analysis

SKCM0.0061

Kaplan-Meier Survival Analysis

KIRP0.00035

Kaplan-Meier Survival Analysis

COAD0.037

Kaplan-Meier Survival Analysis

LAML0.003

Kaplan-Meier Survival Analysis

UCEC0.0097

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

LUAD0.036

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000143368 (Gene tree)
Gene ID
10262
Gene Symbol
SF3B4
Alias
SAP49|SF3b49|Hsh49
Full Name
splicing factor 3b subunit 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
5,028 bases
Position
chr1:149,923,317-149,928,344
Accession
10771
RBP type
canonical RBP
Summary
This gene encodes one of four subunits of the splicing factor 3B. The protein encoded by this gene cross-links to a region in the pre-mRNA immediately upstream of the branchpoint sequence in pre-mRNA in the prespliceosomal complex A. It also may be involved in the assembly of the B, C and E spliceosomal complexes. In addition to RNA-binding activity, this protein interacts directly and highly specifically with subunit 2 of the splicing factor 3B. This protein contains two N-terminal RNA-recognition motifs (RRMs), consistent with the observation that it binds directly to pre-mRNA. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000271628RRM_1PF00076.221.1e-3812
ENSP00000271628RRM_1PF00076.221.1e-3822
ENSP00000391114RRM_1PF00076.226.3e-3112
ENSP00000391114RRM_1PF00076.226.3e-3122
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
9436903Conservation of structure and subunit interactions in yeast homologues of splicing factor 3b (SF3b) subunits.RNA1998 JanIgel H-
7664121Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus.Nat Struct Biol1995 JulMosyak L-
20554048Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs.Methods2010 OctFerre-D'Amare ARdoi: 10.1016/j.ymeth.2010.06.008
9163526Polycistronic expression and RNA-binding specificity of the C. elegans homologue of the spliceosome-associated protein SAP49.J Biochem1997 AprTanaka Y-
8841523Crystal structure of the U1A spliceosomal protein complexed with its cognate RNA hairpin.Nucleic Acids Symp Ser1995Nagai K-
10360356Simulations of the dynamics at an RNA-protein interface.Nat Struct Biol1999 JunHermann T-
7984237Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin.Nature1994 Dec 1Oubridge C-
1454520Bacteriophage and spliceosomal proteins function as position-dependent cis/trans repressors of mRNA translation in vitro.Nucleic Acids Res1992 Nov 11Stripecke R-
7958871The prespliceosome components SAP 49 and SAP 145 interact in a complex implicated in tethering U2 snRNP to the branch site.Genes Dev1994 Aug 15Champion-Arnaud P-
18076038Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses.Proteins2008 JunKuwasako K-
31004060Component of splicing factor SF3b plays a key role in translational control of polyribosomes on the endoplasmic reticulum.Proc Natl Acad Sci U S A2019 May 7Ueno Tdoi: 10.1073/pnas.1901742116
8696973RNA-protein complexes.Curr Opin Struct Biol1996 FebNagai K-
7783201Crystallisation of RNA-protein complexes. II. The application of protein engineering for crystallisation of the U1A protein-RNA complex.J Mol Biol1995 Jun 2Oubridge C-
11566759Calculations of free-energy contributions to protein-RNA complex stabilization.Biophys J2001 OctOlson MA-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000271628SF3B4-2012085-ENSP00000271628424 (aa)-Q15427
ENST00000457312SF3B4-202826-ENSP00000391114190 (aa)-Q5SZ64
Gene Model
Click here to download ENSG00000143368's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000143368's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000143368SF3B47330.667ENSG00000180098TRNAU1AP6230.667
ENSG00000143368SF3B47736.000ENSG00000151846PABPC35836.612
ENSG00000143368SF3B47546.237ENSG00000090621PABPC49844.737
ENSG00000143368SF3B47834.615ENSG00000186288PABPC1L2A9034.615
ENSG00000143368SF3B46335.246ENSG00000101489CELF45136.145
ENSG00000143368SF3B48137.821ENSG00000101104PABPC1L9738.095
ENSG00000143368SF3B47436.232ENSG00000100461RBM236634.694
ENSG00000143368SF3B46532.374ENSG00000179950PUF606231.429
ENSG00000143368SF3B47434.559ENSG00000066044ELAVL19432.335
ENSG00000143368SF3B47435.294ENSG00000162374ELAVL49030.726
ENSG00000143368SF3B45433.333ENSG00000138668HNRNPD9932.456
ENSG00000143368SF3B49333.333ENSG00000070756PABPC19840.909
ENSG00000143368SF3B47231.757ENSG00000131051RBM397230.899
ENSG00000143368SF3B47232.143ENSG00000140488CELF65630.000
ENSG00000143368SF3B47135.938ENSG00000116001TIA18837.956
ENSG00000143368SF3B47842.105ENSG00000254535PABPC4L9742.105
ENSG00000143368SF3B47240.152ENSG00000174740PABPC59340.769
ENSG00000143368SF3B47435.294ENSG00000107105ELAVL29330.939
ENSG00000143368SF3B47834.615ENSG00000184388PABPC1L2B9034.615
ENSG00000143368SF3B47439.706ENSG00000196361ELAVL36738.571
ENSG00000143368SF3B47136.719ENSG00000151923TIAL19237.500
ENSG00000143368SF3B47130.986ENSG00000099783HNRNPM5632.258
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000143368SF3B49896.791ENSAPOG00000017647sf3b47782.445Acanthochromis_polyacanthus
ENSG00000143368SF3B4100100.000ENSAMEG00000010073SF3B410099.764Ailuropoda_melanoleuca
ENSG00000143368SF3B49995.745ENSACIG00000018455sf3b46796.930Amphilophus_citrinellus
ENSG00000143368SF3B489100.000ENSAOCG00000019801sf3b47782.445Amphiprion_ocellaris
ENSG00000143368SF3B489100.000ENSAPEG00000010365sf3b47782.445Amphiprion_percula
ENSG00000143368SF3B49896.791ENSATEG00000012844sf3b47681.562Anabas_testudineus
ENSG00000143368SF3B490100.000ENSACAG00000010019SF3B49089.817Anolis_carolinensis
ENSG00000143368SF3B4100100.000ENSANAG00000031025SF3B4100100.000Aotus_nancymaae
ENSG00000143368SF3B49995.767ENSACLG00000014260sf3b47681.505Astatotilapia_calliptera
ENSG00000143368SF3B49896.791ENSAMXG00000008282sf3b46096.250Astyanax_mexicanus
ENSG00000143368SF3B4100100.000ENSBTAG00000012495SF3B410099.764Bos_taurus
ENSG00000143368SF3B410098.421ENSBTAG00000012793-9396.354Bos_taurus
ENSG00000143368SF3B49082.474ENSCJAG00000042351SF3B48782.474Callithrix_jacchus
ENSG00000143368SF3B4100100.000ENSCAFG00000011617SF3B410099.292Canis_familiaris
ENSG00000143368SF3B4100100.000ENSCAFG00020019775SF3B410099.292Canis_lupus_dingo
ENSG00000143368SF3B4100100.000ENSCHIG00000025663-10099.764Capra_hircus
ENSG00000143368SF3B4100100.000ENSTSYG00000009295SF3B4100100.000Carlito_syrichta
ENSG00000143368SF3B494100.000ENSCAPG00000006451SF3B450100.000Cavia_aperea
ENSG00000143368SF3B4100100.000ENSCPOG00000008267SF3B410099.528Cavia_porcellus
ENSG00000143368SF3B410099.474ENSCCAG00000021751-6993.210Cebus_capucinus
ENSG00000143368SF3B410092.105ENSCCAG00000019823-7786.810Cebus_capucinus
ENSG00000143368SF3B4100100.000ENSCATG00000033114SF3B4100100.000Cercocebus_atys
ENSG00000143368SF3B4100100.000ENSCLAG00000015851SF3B410099.528Chinchilla_lanigera
ENSG00000143368SF3B4100100.000ENSCSAG00000018129SF3B4100100.000Chlorocebus_sabaeus
ENSG00000143368SF3B49997.354ENSCPBG00000008041SF3B49190.625Chrysemys_picta_bellii
ENSG00000143368SF3B49190.116ENSCING00000002337-5790.521Ciona_intestinalis
ENSG00000143368SF3B48889.881ENSCSAVG00000007809-8889.697Ciona_savignyi
ENSG00000143368SF3B4100100.000ENSCANG00000035579SF3B4100100.000Colobus_angolensis_palliatus
ENSG00000143368SF3B4100100.000ENSCGRG00001003590Sf3b410099.528Cricetulus_griseus_chok1gshd
ENSG00000143368SF3B4100100.000ENSCGRG00000016914Sf3b410099.528Cricetulus_griseus_crigri
ENSG00000143368SF3B49994.180ENSCVAG00000005536sf3b454100.000Cyprinodon_variegatus
ENSG00000143368SF3B49896.791ENSDARG00000018574sf3b47780.878Danio_rerio
ENSG00000143368SF3B4100100.000ENSDNOG00000048908-9996.875Dasypus_novemcinctus
ENSG00000143368SF3B410081.675ENSDNOG00000037231-7681.789Dasypus_novemcinctus
ENSG00000143368SF3B4100100.000ENSDORG00000016366Sf3b410099.764Dipodomys_ordii
ENSG00000143368SF3B49787.568ENSETEG00000008963SF3B47692.593Echinops_telfairi
ENSG00000143368SF3B4100100.000ENSEASG00005001477SF3B410099.764Equus_asinus_asinus
ENSG00000143368SF3B4100100.000ENSECAG00000024737SF3B410099.764Equus_caballus
ENSG00000143368SF3B410096.842ENSELUG00000012876sf3b46097.083Esox_lucius
ENSG00000143368SF3B4100100.000ENSFCAG00000010106SF3B410099.764Felis_catus
ENSG00000143368SF3B4100100.000ENSFDAG00000009286SF3B410099.528Fukomys_damarensis
ENSG00000143368SF3B49896.257ENSGMOG00000002519sf3b46797.368Gadus_morhua
ENSG00000143368SF3B490100.000ENSGALG00000013352SF3B49089.556Gallus_gallus
ENSG00000143368SF3B49896.791ENSGAFG00000010181sf3b45897.807Gambusia_affinis
ENSG00000143368SF3B410096.842ENSGACG00000003819sf3b45897.807Gasterosteus_aculeatus
ENSG00000143368SF3B49997.354ENSGAGG00000025055SF3B47990.365Gopherus_agassizii
ENSG00000143368SF3B4100100.000ENSGGOG00000004761SF3B4100100.000Gorilla_gorilla
ENSG00000143368SF3B49386.034ENSGGOG00000038845-5489.524Gorilla_gorilla
ENSG00000143368SF3B49995.767ENSHBUG00000002028sf3b47681.505Haplochromis_burtoni
ENSG00000143368SF3B4100100.000ENSHGLG00000012360SF3B410099.528Heterocephalus_glaber_female
ENSG00000143368SF3B4100100.000ENSHGLG00100008533SF3B410098.349Heterocephalus_glaber_male
ENSG00000143368SF3B48999.412ENSHCOG00000003014sf3b45796.491Hippocampus_comes
ENSG00000143368SF3B410096.316ENSIPUG00000012242Sf3b47781.250Ictalurus_punctatus
ENSG00000143368SF3B4100100.000ENSSTOG00000000684-10099.764Ictidomys_tridecemlineatus
ENSG00000143368SF3B49973.545ENSSTOG00000029627-7467.913Ictidomys_tridecemlineatus
ENSG00000143368SF3B47684.052ENSJJAG00000022500Sf3b49584.052Jaculus_jaculus
ENSG00000143368SF3B410096.316ENSKMAG00000008154sf3b45898.246Kryptolebias_marmoratus
ENSG00000143368SF3B49997.354ENSLBEG00000026818sf3b45798.246Labrus_bergylta
ENSG00000143368SF3B49796.757ENSLACG00000004436SF3B48785.312Latimeria_chalumnae
ENSG00000143368SF3B49996.825ENSLOCG00000009048sf3b47585.266Lepisosteus_oculatus
ENSG00000143368SF3B4100100.000ENSLAFG00000008531SF3B410099.294Loxodonta_africana
ENSG00000143368SF3B4100100.000ENSMFAG00000042395SF3B4100100.000Macaca_fascicularis
ENSG00000143368SF3B49581.215ENSMFAG00000039067-5780.841Macaca_fascicularis
ENSG00000143368SF3B4100100.000ENSMMUG00000007256SF3B4100100.000Macaca_mulatta
ENSG00000143368SF3B4100100.000ENSMNEG00000031839SF3B4100100.000Macaca_nemestrina
ENSG00000143368SF3B49580.663ENSMNEG00000031526-5780.374Macaca_nemestrina
ENSG00000143368SF3B4100100.000ENSMLEG00000038667SF3B4100100.000Mandrillus_leucophaeus
ENSG00000143368SF3B410096.842ENSMAMG00000014692sf3b46097.083Mastacembelus_armatus
ENSG00000143368SF3B49995.767ENSMZEG00005026741sf3b47681.505Maylandia_zebra
ENSG00000143368SF3B490100.000ENSMGAG00000000653SF3B49188.083Meleagris_gallopavo
ENSG00000143368SF3B4100100.000ENSMAUG00000015266Sf3b410099.528Mesocricetus_auratus
ENSG00000143368SF3B4100100.000ENSMICG00000044961SF3B410099.764Microcebus_murinus
ENSG00000143368SF3B410096.842ENSMOCG00000014155-10094.458Microtus_ochrogaster
ENSG00000143368SF3B4100100.000ENSMOCG00000013658-10099.528Microtus_ochrogaster
ENSG00000143368SF3B410096.842ENSMMOG00000018032sf3b45897.807Mola_mola
ENSG00000143368SF3B4100100.000ENSMODG00000018767SF3B410099.057Monodelphis_domestica
ENSG00000143368SF3B489100.000ENSMALG00000006174sf3b45797.368Monopterus_albus
ENSG00000143368SF3B4100100.000MGP_CAROLIEiJ_G0025365Sf3b410099.292Mus_caroli
ENSG00000143368SF3B4100100.000ENSMUSG00000068856Sf3b410099.528Mus_musculus
ENSG00000143368SF3B4100100.000MGP_PahariEiJ_G0026809Sf3b410099.528Mus_pahari
ENSG00000143368SF3B4100100.000MGP_SPRETEiJ_G0026309Sf3b410099.528Mus_spretus
ENSG00000143368SF3B4100100.000ENSMPUG00000005563SF3B410099.764Mustela_putorius_furo
ENSG00000143368SF3B410099.528ENSMLUG00000010789SF3B410099.528Myotis_lucifugus
ENSG00000143368SF3B4100100.000ENSNGAG00000016337Sf3b410099.292Nannospalax_galili
ENSG00000143368SF3B49996.296ENSNBRG00000013865sf3b47681.818Neolamprologus_brichardi
ENSG00000143368SF3B49789.730ENSNLEG00000000537-8285.185Nomascus_leucogenys
ENSG00000143368SF3B410070.327ENSNLEG00000009693-10070.327Nomascus_leucogenys
ENSG00000143368SF3B481100.000ENSMEUG00000003272SF3B482100.000Notamacropus_eugenii
ENSG00000143368SF3B49997.150ENSOPRG00000010808SF3B49997.150Ochotona_princeps
ENSG00000143368SF3B49976.190ENSODEG00000008916-8471.827Octodon_degus
ENSG00000143368SF3B49781.720ENSODEG00000003597-7986.751Octodon_degus
ENSG00000143368SF3B49995.767ENSONIG00000002730sf3b45797.807Oreochromis_niloticus
ENSG00000143368SF3B484100.000ENSOANG00000004768-5081.776Ornithorhynchus_anatinus
ENSG00000143368SF3B48258.974ENSOANG00000020581-9958.974Ornithorhynchus_anatinus
ENSG00000143368SF3B4100100.000ENSOCUG00000004614SF3B410099.764Oryctolagus_cuniculus
ENSG00000143368SF3B49996.296ENSORLG00000003062sf3b45997.807Oryzias_latipes
ENSG00000143368SF3B49996.296ENSORLG00020000687sf3b45797.807Oryzias_latipes_hni
ENSG00000143368SF3B49996.296ENSORLG00015010989sf3b45797.807Oryzias_latipes_hsok
ENSG00000143368SF3B49996.296ENSOMEG00000013694sf3b45797.807Oryzias_melastigma
ENSG00000143368SF3B4100100.000ENSOGAG00000006265SF3B410099.764Otolemur_garnettii
ENSG00000143368SF3B49981.383ENSOARG00000007368-7779.375Ovis_aries
ENSG00000143368SF3B4100100.000ENSOARG00000020718-10099.764Ovis_aries
ENSG00000143368SF3B49789.189ENSPPAG00000030024-7882.716Pan_paniscus
ENSG00000143368SF3B4100100.000ENSPPAG00000040904SF3B4100100.000Pan_paniscus
ENSG00000143368SF3B4100100.000ENSPPRG00000007384SF3B410099.764Panthera_pardus
ENSG00000143368SF3B4100100.000ENSPTIG00000014530SF3B410099.292Panthera_tigris_altaica
ENSG00000143368SF3B4100100.000ENSPTRG00000001243SF3B4100100.000Pan_troglodytes
ENSG00000143368SF3B49789.189ENSPTRG00000049727-5990.254Pan_troglodytes
ENSG00000143368SF3B4100100.000ENSPANG00000005126SF3B4100100.000Papio_anubis
ENSG00000143368SF3B410096.842ENSPKIG00000020669sf3b46098.246Paramormyrops_kingsleyae
ENSG00000143368SF3B49997.354ENSPSIG00000009565SF3B46997.354Pelodiscus_sinensis
ENSG00000143368SF3B46365.455ENSPMGG00000023148-7495.588Periophthalmus_magnuspinnatus
ENSG00000143368SF3B4100100.000ENSPEMG00000017568Sf3b410099.528Peromyscus_maniculatus_bairdii
ENSG00000143368SF3B48995.294ENSPMAG00000007842-5095.283Petromyzon_marinus
ENSG00000143368SF3B4100100.000ENSPCIG00000008765SF3B410099.057Phascolarctos_cinereus
ENSG00000143368SF3B410095.263ENSPFOG00000005754sf3b45897.368Poecilia_formosa
ENSG00000143368SF3B410095.263ENSPLAG00000001401sf3b46397.368Poecilia_latipinna
ENSG00000143368SF3B49995.767ENSPREG00000011076sf3b45797.807Poecilia_reticulata
ENSG00000143368SF3B48798.788ENSPCAG00000000392SF3B46396.635Procavia_capensis
ENSG00000143368SF3B4100100.000ENSPCOG00000015399SF3B410099.764Propithecus_coquereli
ENSG00000143368SF3B4100100.000ENSPVAG00000014171SF3B410099.764Pteropus_vampyrus
ENSG00000143368SF3B49995.767ENSPNYG00000012700sf3b47681.505Pundamilia_nyererei
ENSG00000143368SF3B49896.791ENSPNAG00000000686sf3b47980.938Pygocentrus_nattereri
ENSG00000143368SF3B4100100.000ENSRNOG00000021181Sf3b410099.528Rattus_norvegicus
ENSG00000143368SF3B4100100.000ENSRBIG00000043392SF3B4100100.000Rhinopithecus_bieti
ENSG00000143368SF3B49675.410ENSRROG00000028213-9167.914Rhinopithecus_roxellana
ENSG00000143368SF3B4100100.000ENSRROG00000029366SF3B4100100.000Rhinopithecus_roxellana
ENSG00000143368SF3B47937.195YOR319W-9137.949Saccharomyces_cerevisiae
ENSG00000143368SF3B410099.764ENSSBOG00000012310-10099.764Saimiri_boliviensis_boliviensis
ENSG00000143368SF3B410083.158ENSSBOG00000025174-7379.567Saimiri_boliviensis_boliviensis
ENSG00000143368SF3B410099.474ENSSHAG00000004043SF3B410098.688Sarcophilus_harrisii
ENSG00000143368SF3B410096.842ENSSFOG00015008864sf3b45698.246Scleropages_formosus
ENSG00000143368SF3B489100.000ENSSMAG00000006837sf3b47782.132Scophthalmus_maximus
ENSG00000143368SF3B410096.842ENSSDUG00000012064sf3b47682.188Seriola_dumerili
ENSG00000143368SF3B410096.842ENSSLDG00000014226sf3b46097.083Seriola_lalandi_dorsalis
ENSG00000143368SF3B49997.354ENSSPUG00000001028SF3B45798.684Sphenodon_punctatus
ENSG00000143368SF3B410097.368ENSSPAG00000019219sf3b47682.500Stegastes_partitus
ENSG00000143368SF3B4100100.000ENSSSCG00000006665-10099.528Sus_scrofa
ENSG00000143368SF3B410061.579ENSSSCG00000039440-7965.741Sus_scrofa
ENSG00000143368SF3B49996.825ENSTGUG00000004470SF3B49098.246Taeniopygia_guttata
ENSG00000143368SF3B49796.196ENSTRUG00000004516sf3b45796.491Takifugu_rubripes
ENSG00000143368SF3B49896.257ENSTNIG00000009156sf3b45897.368Tetraodon_nigroviridis
ENSG00000143368SF3B4100100.000ENSTTRG00000005217SF3B410099.764Tursiops_truncatus
ENSG00000143368SF3B4100100.000ENSUAMG00000022468SF3B410099.764Ursus_americanus
ENSG00000143368SF3B4100100.000ENSUMAG00000003802SF3B410098.821Ursus_maritimus
ENSG00000143368SF3B4100100.000ENSVPAG00000008152SF3B410099.757Vicugna_pacos
ENSG00000143368SF3B4100100.000ENSVVUG00000007732-10092.584Vulpes_vulpes
ENSG00000143368SF3B410096.842ENSVVUG00000022697-5896.014Vulpes_vulpes
ENSG00000143368SF3B489100.000ENSXETG00000011038sf3b453100.000Xenopus_tropicalis
ENSG00000143368SF3B49896.791ENSXCOG00000019895sf3b45897.807Xiphophorus_couchianus
ENSG00000143368SF3B49896.791ENSXMAG00000003772sf3b45897.807Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000375RNA splicing, via transesterification reactions7958871.TASProcess
GO:0000398mRNA splicing, via spliceosome9731529.ICProcess
GO:0000398mRNA splicing, via spliceosome29360106.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005515protein binding16189514.17474147.21516116.21988832.22365833.25416956.26871637.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus29360106.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex21873635.IBAComponent
GO:0005681spliceosomal complex9731529.IDAComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005689U12-type spliceosomal complex15146077.IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0006397mRNA processing7958871.TASProcess
GO:0008380RNA splicing7958871.TASProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome21873635.IBAProcess
GO:0071005U2-type precatalytic spliceosome29360106.IDAComponent
GO:1990904ribonucleoprotein complex21873635.IBAComponent
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