EuRBPDB

Note: to get the extension of tumor abbreviations.

Cancer Related Information
Basic Information

Differential Expression

Expression in 33 cancers

Mutations

Cancer	Chr	Position	Mutation Type	dbSNP	Protein-change	Allele Freq	RBD
ACC	chr12	95859037	5'UTR	novel		0.16
BRCA	chr12	95866306	3'UTR	novel		0.14
ESCA	chr12	95866165	3'UTR	novel		0.31
ESCA	chr12	95866028	Missense_Mutation	novel	R73T	0.56
HNSC	chr12	95866098	3'UTR	novel		0.11
KIRC	chr12	95866088	3'UTR	rs768278252		0.41
KIRC	chr12	95866098	3'UTR	novel		0.04
LIHC	chr12	95861222	In_Frame_Del	novel	V21_M27del	0.14	LSM
LUAD	chr12	95865357	Silent	NA	L55L	0.07
LUSC	chr12	95865363	Missense_Mutation	NA	G57R	0.29
LUSC	chr12	95861167	Splice_Site	novel	X2_splice	0.06
LUSC	chr12	95866158	3'UTR	novel		0.16
OV	chr12	95861167	Splice_Site	novel	X2_splice	0.06
STAD	chr12	95866088	3'UTR	rs768278252		0.38
STAD	chr12	95866088	3'UTR	rs768278252		0.48
UCEC	chr12	95861248	Silent	novel	E28E	0.44
UCEC	chr12	95866071	Silent	novel	*87*	0.29
UCEC	chr12	95861216	Missense_Mutation	novel	P18S	0.35	LSM
UCEC	chr12	95866088	3'UTR	rs768278252		0.48
UCEC	chr12	95866088	3'UTR	rs768278252		0.47
UCEC	chr12	95865339	Nonsense_Mutation	novel	E49*	0.38
UCEC	chr12	95861283	Missense_Mutation	novel	M40T	0.33	LSM
UCEC	chr12	95861221	Silent	novel	V19V	0.38
UCEC	chr12	95866088	3'UTR	rs768278252		0.33

Copy Number Variations (CNVs)

Cancer	Type	Freq	Q-value
ACC	DEL	0.0222	0.20414
CHOL	DEL	0.1944	0.067545
ESCA	DEL	0.163	0.045584
HNSC	DEL	0.0651	0.22646
LUAD	DEL	0.1434	0.0059643
PAAD	DEL	0.1902	0.0030251
PRAD	AMP	0.063	0.016187
READ	DEL	0.0909	0.064633
SKCM	DEL	0.1989	0.00079981

Survival Analysis

Cancer	P-value	Q-value
KIRC	0.0001	Kaplan-Meier Survival Analysis
SARC	0.034	Kaplan-Meier Survival Analysis
MESO	0.00012	Kaplan-Meier Survival Analysis
ACC	0.0015	Kaplan-Meier Survival Analysis
ESCA	0.019	Kaplan-Meier Survival Analysis
KIRP	0.0087	Kaplan-Meier Survival Analysis
BLCA	0.0016	Kaplan-Meier Survival Analysis
CESC	0.0033	Kaplan-Meier Survival Analysis
LIHC	0.028	Kaplan-Meier Survival Analysis
LUAD	0.026	Kaplan-Meier Survival Analysis

Drugs

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathway

Phenotype

GWAS

PPI

Paralog

Ortholog

Gene Ontology

Description

Ensembl ID: ENSG00000139343 (Gene tree)
Gene ID: 6636
Gene Symbol: SNRPF
Alias: Sm-F
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Specie: Homo_sapiens
Strand: Plus strand
Length: 44,901 bases
Position: chr12:95,858,928-95,903,828
Accession: 11162
Summary: (Small Nuclear Ribonucleoprotein Polypeptide F) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Minor Pathway and Transport of the SLBP independent Mature mRNA. Gene Ontology (GO) annotations related to this gene include RNA binding. An important paralog of this gene is LSM6.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000266735	LSM	PF01423.22	1e-20	1	1
ENSP00000447751	LSM	PF01423.22	8.6e-10	1	1
ENSP00000447127	LSM	PF01423.22	2.4e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
27417296	Structure-function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring.	RNA	2016 Sep	Schwer B	doi: 10.1261/rna.057448.116
12618433	Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA. Crystal structure of an oligomeric complex of yeast SmF.	J Biol Chem	2003 May 9	Collins BM	-

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000553192	SNRPF-205	552	-	ENSP00000447751	67 (aa)	-	A0A0B4J254
ENST00000266735	SNRPF-201	1389	-	ENSP00000266735	86 (aa)	-	P62306
ENST00000551316	SNRPF-203	787	-	-	- (aa)	-	-
ENST00000552085	SNRPF-204	815	-	ENSP00000447127	127 (aa)	-	F8W0W6
ENST00000549580	SNRPF-202	757	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000139343's gene model file

Pathway

Pathway ID	Pathway Name	Source
hsa03040	Spliceosome	KEGG

Phenotype

ensgID	Trait	pValue	Pubmed ID
ENSG00000139343	Platelet Function Tests	6.0530042E-006	-
ENSG00000139343	Platelet Function Tests	1.8505000E-005	-
ENSG00000139343	Lung Volume Measurements	5E-8	28166213

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000139343	rs1036429	12	95877650	?	Pulmonary function (smoking interaction)	23284291			EFO_0003892\|EFO_0005671\|EFO_0004713
ENSG00000139343	rs6538678	12	95867790	A	Lupus nephritis in systemic lupus erythematosus	24925725	[1.30-1.88]	1.57	EFO_0002690\|EFO_0005761
ENSG00000139343	rs1436124	12	95889654	G	Menstruation quality of life impact (acne)	29855537	[0.092-0.238] unit decrease	0.1649891	EFO_0009366\|EFO_0003894
ENSG00000139343	rs12820313	12	95861926	C	Lung function (FEV1/FVC)	28166213	[0.028-0.06] unit decrease	0.044	EFO_0004713
ENSG00000139343	rs1036429	12	95877650	T	Pulmonary function	21946350	[0.026-0.050] unit increase	0.038	EFO_0003892\|EFO_0004713

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000139343's network

Paralog

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000139343	SNRPF	77	51.515	ENSG00000164167	LSM6	83	51.515
ENSG00000139343	SNRPF	69	38.462	ENSG00000112081	SRSF3	96	38.462
ENSG00000139343	SNRPF	53	41.791	ENSG00000134419	RPS15A	52	41.791
ENSG00000139343	SNRPF	62	46.835	ENSG00000152147	GEMIN6	58	46.835

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy	Species
ENSG00000139343	SNRPF	99	97.647	ENSAPOG00000003377	snrpf	66	97.647	Acanthochromis_polyacanthus
ENSG00000139343	SNRPF	99	100.000	ENSAMEG00000002166	-	100	100.000	Ailuropoda_melanoleuca
ENSG00000139343	SNRPF	88	86.842	ENSAMEG00000018718	-	87	88.000	Ailuropoda_melanoleuca
ENSG00000139343	SNRPF	98	97.619	ENSACIG00000013216	snrpf	99	97.619	Amphilophus_citrinellus
ENSG00000139343	SNRPF	98	97.619	ENSAOCG00000015108	snrpf	99	97.619	Amphiprion_ocellaris
ENSG00000139343	SNRPF	98	97.619	ENSAPEG00000022022	snrpf	99	97.619	Amphiprion_percula
ENSG00000139343	SNRPF	98	97.619	ENSATEG00000022625	snrpf	90	97.619	Anabas_testudineus
ENSG00000139343	SNRPF	99	98.824	ENSACAG00000014073	SNRPF	98	98.824	Anolis_carolinensis
ENSG00000139343	SNRPF	83	91.549	ENSANAG00000020297	-	65	91.549	Aotus_nancymaae
ENSG00000139343	SNRPF	100	100.000	ENSANAG00000032845	SNRPF	100	100.000	Aotus_nancymaae
ENSG00000139343	SNRPF	87	69.333	ENSANAG00000025860	-	85	69.333	Aotus_nancymaae
ENSG00000139343	SNRPF	98	97.619	ENSACLG00000016066	snrpf	99	97.619	Astatotilapia_calliptera
ENSG00000139343	SNRPF	87	94.667	ENSAMXG00000007421	snrpf	87	94.667	Astyanax_mexicanus
ENSG00000139343	SNRPF	100	100.000	ENSBTAG00000016271	SNRPF	100	100.000	Bos_taurus
ENSG00000139343	SNRPF	91	93.590	ENSBTAG00000050012	-	93	93.333	Bos_taurus
ENSG00000139343	SNRPF	90	72.727	WBGene00004918	snr-5	85	75.000	Caenorhabditis_elegans
ENSG00000139343	SNRPF	100	100.000	ENSCJAG00000002705	-	100	100.000	Callithrix_jacchus
ENSG00000139343	SNRPF	85	91.781	ENSCAFG00000031151	-	85	94.521	Canis_familiaris
ENSG00000139343	SNRPF	100	100.000	ENSCAFG00000006395	-	77	100.000	Canis_familiaris
ENSG00000139343	SNRPF	91	88.462	ENSCAFG00020013161	-	74	97.143	Canis_lupus_dingo
ENSG00000139343	SNRPF	85	91.781	ENSCAFG00020010823	-	85	94.521	Canis_lupus_dingo
ENSG00000139343	SNRPF	94	93.827	ENSTSYG00000031636	-	61	95.890	Carlito_syrichta
ENSG00000139343	SNRPF	87	86.667	ENSTSYG00000030635	-	87	86.667	Carlito_syrichta
ENSG00000139343	SNRPF	100	94.253	ENSTSYG00000036502	-	100	94.253	Carlito_syrichta
ENSG00000139343	SNRPF	99	100.000	ENSCAPG00000007242	SNRPF	100	100.000	Cavia_aperea
ENSG00000139343	SNRPF	100	100.000	ENSCPOG00000013898	SNRPF	100	100.000	Cavia_porcellus
ENSG00000139343	SNRPF	100	100.000	ENSCCAG00000037378	-	100	100.000	Cebus_capucinus
ENSG00000139343	SNRPF	100	88.372	ENSCCAG00000033627	-	59	89.333	Cebus_capucinus
ENSG00000139343	SNRPF	100	98.837	ENSCCAG00000017356	-	100	98.837	Cebus_capucinus
ENSG00000139343	SNRPF	100	100.000	ENSCLAG00000007200	SNRPF	100	100.000	Chinchilla_lanigera
ENSG00000139343	SNRPF	100	100.000	ENSCSAG00000003602	-	70	100.000	Chlorocebus_sabaeus
ENSG00000139343	SNRPF	74	100.000	ENSCHOG00000009392	SNRPF	100	100.000	Choloepus_hoffmanni
ENSG00000139343	SNRPF	99	94.118	ENSCPBG00000024287	-	67	94.118	Chrysemys_picta_bellii
ENSG00000139343	SNRPF	87	92.000	ENSCPBG00000006227	-	87	92.000	Chrysemys_picta_bellii
ENSG00000139343	SNRPF	100	88.372	ENSCPBG00000001985	-	89	90.667	Chrysemys_picta_bellii
ENSG00000139343	SNRPF	100	89.535	ENSCPBG00000026463	-	87	90.667	Chrysemys_picta_bellii
ENSG00000139343	SNRPF	99	87.059	ENSCSAVG00000007498	-	84	89.189	Ciona_savignyi
ENSG00000139343	SNRPF	87	92.000	ENSCGRG00001008965	-	58	92.000	Cricetulus_griseus_chok1gshd
ENSG00000139343	SNRPF	100	100.000	ENSCGRG00001017100	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSG00000139343	SNRPF	100	100.000	ENSCGRG00000000336	-	100	100.000	Cricetulus_griseus_crigri
ENSG00000139343	SNRPF	93	92.500	ENSCGRG00000018878	-	94	92.000	Cricetulus_griseus_crigri
ENSG00000139343	SNRPF	87	96.000	ENSCSEG00000004748	snrpf	87	96.000	Cynoglossus_semilaevis
ENSG00000139343	SNRPF	99	97.647	ENSCVAG00000000397	snrpf	67	97.647	Cyprinodon_variegatus
ENSG00000139343	SNRPF	100	95.455	ENSDARG00000105037	snrpf	100	95.455	Danio_rerio
ENSG00000139343	SNRPF	100	98.837	ENSDNOG00000048989	-	77	98.837	Dasypus_novemcinctus
ENSG00000139343	SNRPF	100	100.000	ENSDNOG00000043775	-	55	100.000	Dasypus_novemcinctus
ENSG00000139343	SNRPF	87	84.000	ENSDNOG00000049373	-	65	84.000	Dasypus_novemcinctus
ENSG00000139343	SNRPF	81	98.571	ENSDORG00000029740	-	85	98.571	Dipodomys_ordii
ENSG00000139343	SNRPF	84	88.889	ENSDORG00000025351	-	100	88.889	Dipodomys_ordii
ENSG00000139343	SNRPF	98	78.571	FBgn0000426	SmF	83	82.192	Drosophila_melanogaster
ENSG00000139343	SNRPF	100	100.000	ENSETEG00000001558	-	100	100.000	Echinops_telfairi
ENSG00000139343	SNRPF	95	75.610	ENSEBUG00000001793	-	72	86.567	Eptatretus_burgeri
ENSG00000139343	SNRPF	100	100.000	ENSECAG00000019817	SNRPF	70	100.000	Equus_caballus
ENSG00000139343	SNRPF	99	100.000	ENSEEUG00000013509	SNRPF	100	100.000	Erinaceus_europaeus
ENSG00000139343	SNRPF	100	91.860	ENSELUG00000007737	RUXF	86	93.333	Esox_lucius
ENSG00000139343	SNRPF	87	94.667	ENSELUG00000003121	RUXF	87	94.667	Esox_lucius
ENSG00000139343	SNRPF	98	78.571	ENSFCAG00000031148	-	72	76.923	Felis_catus
ENSG00000139343	SNRPF	87	76.000	ENSFCAG00000021942	-	87	76.000	Felis_catus
ENSG00000139343	SNRPF	100	100.000	ENSFCAG00000029966	-	100	100.000	Felis_catus
ENSG00000139343	SNRPF	99	100.000	ENSFALG00000010799	SNRPF	99	100.000	Ficedula_albicollis
ENSG00000139343	SNRPF	100	100.000	ENSFDAG00000002831	-	100	100.000	Fukomys_damarensis
ENSG00000139343	SNRPF	99	97.647	ENSFHEG00000003240	snrpf	75	97.647	Fundulus_heteroclitus
ENSG00000139343	SNRPF	99	97.647	ENSGMOG00000007741	snrpf	100	97.647	Gadus_morhua
ENSG00000139343	SNRPF	100	100.000	ENSGALG00000011409	SNRPF	100	100.000	Gallus_gallus
ENSG00000139343	SNRPF	98	97.619	ENSGAFG00000016187	snrpf	97	97.619	Gambusia_affinis
ENSG00000139343	SNRPF	99	96.471	ENSGACG00000020055	snrpf	100	96.471	Gasterosteus_aculeatus
ENSG00000139343	SNRPF	70	91.667	ENSGAGG00000011163	-	100	91.667	Gopherus_agassizii
ENSG00000139343	SNRPF	80	86.957	ENSGAGG00000014132	-	83	86.957	Gopherus_agassizii
ENSG00000139343	SNRPF	92	91.139	ENSGAGG00000022991	-	80	94.118	Gopherus_agassizii
ENSG00000139343	SNRPF	72	96.774	ENSGAGG00000020974	-	52	96.774	Gopherus_agassizii
ENSG00000139343	SNRPF	86	93.243	ENSGAGG00000012945	-	69	94.667	Gopherus_agassizii
ENSG00000139343	SNRPF	98	80.952	ENSGGOG00000039936	-	83	78.667	Gorilla_gorilla
ENSG00000139343	SNRPF	92	75.949	ENSGGOG00000039564	-	90	74.667	Gorilla_gorilla
ENSG00000139343	SNRPF	100	100.000	ENSGGOG00000001127	-	100	100.000	Gorilla_gorilla
ENSG00000139343	SNRPF	100	98.837	ENSHGLG00000021172	-	100	98.837	Heterocephalus_glaber_female
ENSG00000139343	SNRPF	100	100.000	ENSHGLG00000009108	SNRPF	100	100.000	Heterocephalus_glaber_female
ENSG00000139343	SNRPF	100	98.837	ENSHGLG00100019596	-	100	98.837	Heterocephalus_glaber_male
ENSG00000139343	SNRPF	99	100.000	ENSHGLG00100008103	-	100	100.000	Heterocephalus_glaber_male
ENSG00000139343	SNRPF	73	85.714	ENSHCOG00000018663	snrpf	55	85.714	Hippocampus_comes
ENSG00000139343	SNRPF	100	97.674	ENSIPUG00000018994	snrpf	100	97.674	Ictalurus_punctatus
ENSG00000139343	SNRPF	100	100.000	ENSSTOG00000010434	-	100	100.000	Ictidomys_tridecemlineatus
ENSG00000139343	SNRPF	100	81.395	ENSJJAG00000004558	-	89	82.667	Jaculus_jaculus
ENSG00000139343	SNRPF	78	94.030	ENSJJAG00000004828	-	100	94.030	Jaculus_jaculus
ENSG00000139343	SNRPF	100	100.000	ENSJJAG00000011272	-	100	100.000	Jaculus_jaculus
ENSG00000139343	SNRPF	100	84.884	ENSJJAG00000010502	-	89	86.667	Jaculus_jaculus
ENSG00000139343	SNRPF	100	96.512	ENSKMAG00000013566	snrpf	100	96.512	Kryptolebias_marmoratus
ENSG00000139343	SNRPF	100	96.512	ENSLBEG00000008800	snrpf	100	96.512	Labrus_bergylta
ENSG00000139343	SNRPF	100	98.837	ENSLACG00000002456	-	74	98.837	Latimeria_chalumnae
ENSG00000139343	SNRPF	87	94.667	ENSLOCG00000015744	snrpf	87	94.667	Lepisosteus_oculatus
ENSG00000139343	SNRPF	99	100.000	ENSLAFG00000017426	SNRPF	99	100.000	Loxodonta_africana
ENSG00000139343	SNRPF	98	96.429	ENSMAMG00000016593	snrpf	99	96.429	Mastacembelus_armatus
ENSG00000139343	SNRPF	98	97.619	ENSMZEG00005014701	snrpf	99	97.619	Maylandia_zebra
ENSG00000139343	SNRPF	98	100.000	ENSMGAG00000011453	-	76	100.000	Meleagris_gallopavo
ENSG00000139343	SNRPF	97	74.699	ENSMAUG00000010289	-	96	74.699	Mesocricetus_auratus
ENSG00000139343	SNRPF	86	100.000	ENSMAUG00000016909	-	100	100.000	Mesocricetus_auratus
ENSG00000139343	SNRPF	86	100.000	ENSMAUG00000019737	-	100	100.000	Mesocricetus_auratus
ENSG00000139343	SNRPF	87	94.667	ENSMAUG00000008799	-	87	94.667	Mesocricetus_auratus
ENSG00000139343	SNRPF	87	93.333	ENSMICG00000030494	-	60	93.333	Microcebus_murinus
ENSG00000139343	SNRPF	100	100.000	ENSMICG00000012153	-	100	100.000	Microcebus_murinus
ENSG00000139343	SNRPF	79	83.824	ENSMOCG00000020220	-	87	83.824	Microtus_ochrogaster
ENSG00000139343	SNRPF	87	85.333	ENSMOCG00000022166	-	82	85.333	Microtus_ochrogaster
ENSG00000139343	SNRPF	100	100.000	ENSMOCG00000020437	Snrpf	100	100.000	Microtus_ochrogaster
ENSG00000139343	SNRPF	99	96.471	ENSMMOG00000007127	snrpf	100	96.471	Mola_mola
ENSG00000139343	SNRPF	100	100.000	ENSMODG00000008091	SNRPF	75	100.000	Monodelphis_domestica
ENSG00000139343	SNRPF	98	97.619	ENSMALG00000012328	snrpf	99	97.619	Monopterus_albus
ENSG00000139343	SNRPF	100	100.000	MGP_CAROLIEiJ_G0015735	-	100	100.000	Mus_caroli
ENSG00000139343	SNRPF	100	100.000	ENSMUSG00000020018	Snrpf	100	100.000	Mus_musculus
ENSG00000139343	SNRPF	100	100.000	MGP_PahariEiJ_G0031350	Snrpf	100	100.000	Mus_pahari
ENSG00000139343	SNRPF	100	100.000	MGP_SPRETEiJ_G0016553	Snrpf	100	100.000	Mus_spretus
ENSG00000139343	SNRPF	100	100.000	ENSMPUG00000007176	-	77	100.000	Mustela_putorius_furo
ENSG00000139343	SNRPF	100	100.000	ENSMLUG00000027932	-	81	100.000	Myotis_lucifugus
ENSG00000139343	SNRPF	100	100.000	ENSMLUG00000029201	-	81	100.000	Myotis_lucifugus
ENSG00000139343	SNRPF	99	100.000	ENSMLUG00000013577	-	100	100.000	Myotis_lucifugus
ENSG00000139343	SNRPF	100	100.000	ENSMLUG00000026149	-	81	100.000	Myotis_lucifugus
ENSG00000139343	SNRPF	100	80.233	ENSMLUG00000026269	-	71	78.667	Myotis_lucifugus
ENSG00000139343	SNRPF	73	90.476	ENSNGAG00000005851	-	71	90.000	Nannospalax_galili
ENSG00000139343	SNRPF	100	100.000	ENSNGAG00000024292	-	100	100.000	Nannospalax_galili
ENSG00000139343	SNRPF	99	97.647	ENSNBRG00000011682	snrpf	87	97.647	Neolamprologus_brichardi
ENSG00000139343	SNRPF	63	100.000	ENSMEUG00000000671	SNRPF	87	70.270	Notamacropus_eugenii
ENSG00000139343	SNRPF	100	100.000	ENSODEG00000010328	-	100	100.000	Octodon_degus
ENSG00000139343	SNRPF	100	98.837	ENSOCUG00000010925	SNRPF	76	98.837	Oryctolagus_cuniculus
ENSG00000139343	SNRPF	86	94.595	ENSORLG00020008216	snrpf	87	94.595	Oryzias_latipes_hni
ENSG00000139343	SNRPF	86	94.595	ENSORLG00015007418	snrpf	87	94.595	Oryzias_latipes_hsok
ENSG00000139343	SNRPF	98	96.429	ENSOMEG00000003018	snrpf	99	96.429	Oryzias_melastigma
ENSG00000139343	SNRPF	100	97.674	ENSOGAG00000030323	-	100	97.674	Otolemur_garnettii
ENSG00000139343	SNRPF	100	100.000	ENSOARG00000011853	-	75	100.000	Ovis_aries
ENSG00000139343	SNRPF	92	75.949	ENSPPAG00000037479	-	91	74.667	Pan_paniscus
ENSG00000139343	SNRPF	98	80.952	ENSPPAG00000037544	-	83	78.667	Pan_paniscus
ENSG00000139343	SNRPF	100	100.000	ENSPPRG00000005875	-	100	100.000	Panthera_pardus
ENSG00000139343	SNRPF	98	77.381	ENSPPRG00000007449	-	77	77.333	Panthera_pardus
ENSG00000139343	SNRPF	98	79.762	ENSPTIG00000005117	-	89	77.333	Panthera_tigris_altaica
ENSG00000139343	SNRPF	100	100.000	ENSPTIG00000007520	SNRPF	100	100.000	Panthera_tigris_altaica
ENSG00000139343	SNRPF	98	80.952	ENSPTRG00000043814	-	83	78.667	Pan_troglodytes
ENSG00000139343	SNRPF	92	75.949	ENSPTRG00000047717	-	91	74.667	Pan_troglodytes
ENSG00000139343	SNRPF	99	97.647	ENSPKIG00000014784	snrpf	93	97.647	Paramormyrops_kingsleyae
ENSG00000139343	SNRPF	99	100.000	ENSPSIG00000016462	SNRPF	99	100.000	Pelodiscus_sinensis
ENSG00000139343	SNRPF	99	96.471	ENSPMGG00000023548	snrpf	100	96.471	Periophthalmus_magnuspinnatus
ENSG00000139343	SNRPF	100	100.000	ENSPEMG00000023326	Snrpf	100	100.000	Peromyscus_maniculatus_bairdii
ENSG00000139343	SNRPF	98	97.619	ENSPLAG00000023932	snrpf	99	97.619	Poecilia_latipinna
ENSG00000139343	SNRPF	98	97.619	ENSPMEG00000003377	snrpf	99	97.619	Poecilia_mexicana
ENSG00000139343	SNRPF	98	97.619	ENSPREG00000022635	snrpf	97	97.619	Poecilia_reticulata
ENSG00000139343	SNRPF	100	100.000	ENSPPYG00000004847	-	100	100.000	Pongo_abelii
ENSG00000139343	SNRPF	100	100.000	ENSPCOG00000023833	-	100	100.000	Propithecus_coquereli
ENSG00000139343	SNRPF	100	100.000	ENSPVAG00000009036	SNRPF	100	100.000	Pteropus_vampyrus
ENSG00000139343	SNRPF	98	97.619	ENSPNYG00000021712	snrpf	99	97.619	Pundamilia_nyererei
ENSG00000139343	SNRPF	98	96.429	ENSPNAG00000019117	snrpf	99	96.429	Pygocentrus_nattereri
ENSG00000139343	SNRPF	100	100.000	ENSRNOG00000005556	Snrpf	100	100.000	Rattus_norvegicus
ENSG00000139343	SNRPF	100	96.512	ENSRBIG00000030414	-	100	96.512	Rhinopithecus_bieti
ENSG00000139343	SNRPF	100	96.512	ENSRROG00000021975	-	100	96.512	Rhinopithecus_roxellana
ENSG00000139343	SNRPF	81	59.155	YPR182W	SMX3	83	59.155	Saccharomyces_cerevisiae
ENSG00000139343	SNRPF	91	80.247	ENSSBOG00000027638	-	91	80.247	Saimiri_boliviensis_boliviensis
ENSG00000139343	SNRPF	87	85.333	ENSSBOG00000032297	-	86	85.333	Saimiri_boliviensis_boliviensis
ENSG00000139343	SNRPF	100	98.837	ENSSBOG00000012868	-	100	98.837	Saimiri_boliviensis_boliviensis
ENSG00000139343	SNRPF	100	100.000	ENSSBOG00000036179	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSG00000139343	SNRPF	99	100.000	ENSSHAG00000012294	SNRPF	77	100.000	Sarcophilus_harrisii
ENSG00000139343	SNRPF	74	96.875	ENSSFOG00015021523	snrpf	96	96.875	Scleropages_formosus
ENSG00000139343	SNRPF	87	94.667	ENSSMAG00000005533	snrpf	86	94.667	Scophthalmus_maximus
ENSG00000139343	SNRPF	76	96.923	ENSSDUG00000016283	snrpf	77	96.923	Seriola_dumerili
ENSG00000139343	SNRPF	93	73.750	ENSSLDG00000003885	-	90	77.027	Seriola_lalandi_dorsalis
ENSG00000139343	SNRPF	100	96.512	ENSSLDG00000005119	snrpf	100	96.512	Seriola_lalandi_dorsalis
ENSG00000139343	SNRPF	98	100.000	ENSSPUG00000014590	-	99	100.000	Sphenodon_punctatus
ENSG00000139343	SNRPF	99	97.647	ENSSPAG00000003283	snrpf	97	97.647	Stegastes_partitus
ENSG00000139343	SNRPF	100	100.000	ENSSSCG00000000895	SNRPF	100	100.000	Sus_scrofa
ENSG00000139343	SNRPF	67	94.828	ENSTRUG00000014956	snrpf	84	94.828	Takifugu_rubripes
ENSG00000139343	SNRPF	100	96.512	ENSTNIG00000012672	snrpf	100	96.512	Tetraodon_nigroviridis
ENSG00000139343	SNRPF	64	100.000	ENSTTRG00000006070	SNRPF	87	70.667	Tursiops_truncatus
ENSG00000139343	SNRPF	100	87.209	ENSUAMG00000001101	-	88	89.333	Ursus_americanus
ENSG00000139343	SNRPF	100	100.000	ENSUAMG00000008176	-	100	100.000	Ursus_americanus
ENSG00000139343	SNRPF	100	100.000	ENSUMAG00000003528	-	100	100.000	Ursus_maritimus
ENSG00000139343	SNRPF	87	89.333	ENSUMAG00000006177	-	88	89.333	Ursus_maritimus
ENSG00000139343	SNRPF	100	100.000	ENSVPAG00000008712	-	100	100.000	Vicugna_pacos
ENSG00000139343	SNRPF	91	92.308	ENSVVUG00000023821	-	96	92.000	Vulpes_vulpes
ENSG00000139343	SNRPF	64	97.674	ENSXETG00000021630	snrpf	87	75.000	Xenopus_tropicalis
ENSG00000139343	SNRPF	98	97.619	ENSXCOG00000013860	snrpf	97	97.619	Xiphophorus_couchianus
ENSG00000139343	SNRPF	98	97.619	ENSXMAG00000015448	snrpf	99	97.619	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	18984161.	IDA	Process
GO:0000387	spliceosomal snRNP assembly	-	TAS	Process
GO:0000398	mRNA splicing, via spliceosome	11991638.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	28076346.	IDA	Process
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	7744013.	IMP	Function
GO:0005515	protein binding	9417867.15231747.18984161.21816274.22365833.25416956.	IPI	Function
GO:0005634	nucleus	28076346.	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005681	spliceosomal complex	7744013.	IDA	Component
GO:0005683	U7 snRNP	11574479.	IDA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21113136.25555158.	IDA	Component
GO:0005687	U4 snRNP	21516107.	IDA	Component
GO:0005689	U12-type spliceosomal complex	15146077.	IDA	Component
GO:0005732	small nucleolar ribonucleoprotein complex	-	IEA	Component
GO:0005829	cytosol	18984161.	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006369	termination of RNA polymerase II transcription	-	TAS	Process
GO:0008334	histone mRNA metabolic process	-	TAS	Process
GO:0008380	RNA splicing	7744013.	IMP	Process
GO:0030532	small nuclear ribonucleoprotein complex	11991638.	IDA	Component
GO:0034709	methylosome	18984161.	IDA	Component
GO:0034715	pICln-Sm protein complex	18984161.	IDA	Component
GO:0034719	SMN-Sm protein complex	18984161.	IDA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	26912367.	IDA	Component
GO:0051170	import into nucleus	-	TAS	Process
GO:0071005	U2-type precatalytic spliceosome	28781166.	IDA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	28076346.	IDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	11991638.	IDA	Component

EuRBPDB

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Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

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Expression

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Gene Model

Pathway

Phenotype

GWAS

PPI

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Gene Ontology

Note: Click here to get the extension of tumor abbreviations.

Select Dataset :

Input Drug :

Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Note: to get the extension of tumor abbreviations.