EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr12958590375'UTRnovel0.16
BRCAchr12958663063'UTRnovel0.14
ESCAchr12958661653'UTRnovel0.31
ESCAchr1295866028Missense_MutationnovelR73T0.56
HNSCchr12958660983'UTRnovel0.11
KIRCchr12958660883'UTRrs7682782520.41
KIRCchr12958660983'UTRnovel0.04
LIHCchr1295861222In_Frame_DelnovelV21_M27del0.14LSM
LUADchr1295865357SilentNAL55L0.07
LUSCchr1295865363Missense_MutationNAG57R0.29
LUSCchr1295861167Splice_SitenovelX2_splice0.06
LUSCchr12958661583'UTRnovel0.16
OVchr1295861167Splice_SitenovelX2_splice0.06
STADchr12958660883'UTRrs7682782520.38
STADchr12958660883'UTRrs7682782520.48
UCECchr1295861248SilentnovelE28E0.44
UCECchr1295866071Silentnovel*87*0.29
UCECchr1295861216Missense_MutationnovelP18S0.35LSM
UCECchr12958660883'UTRrs7682782520.48
UCECchr12958660883'UTRrs7682782520.47
UCECchr1295865339Nonsense_MutationnovelE49*0.38
UCECchr1295861283Missense_MutationnovelM40T0.33LSM
UCECchr1295861221SilentnovelV19V0.38
UCECchr12958660883'UTRrs7682782520.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.02220.20414
CHOLDEL0.19440.067545
ESCADEL0.1630.045584
HNSCDEL0.06510.22646
LUADDEL0.14340.0059643
PAADDEL0.19020.0030251
PRADAMP0.0630.016187
READDEL0.09090.064633
SKCMDEL0.19890.00079981

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

SARC0.034

Kaplan-Meier Survival Analysis

MESO0.00012

Kaplan-Meier Survival Analysis

ACC0.0015

Kaplan-Meier Survival Analysis

ESCA0.019

Kaplan-Meier Survival Analysis

KIRP0.0087

Kaplan-Meier Survival Analysis

BLCA0.0016

Kaplan-Meier Survival Analysis

CESC0.0033

Kaplan-Meier Survival Analysis

LIHC0.028

Kaplan-Meier Survival Analysis

LUAD0.026

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000139343 (Gene tree)
Gene ID
6636
Gene Symbol
SNRPF
Alias
Sm-F
Full Name
small nuclear ribonucleoprotein polypeptide F
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
44,901 bases
Position
chr12:95,858,928-95,903,828
Accession
11162
RBP type
canonical RBP
Summary
(Small Nuclear Ribonucleoprotein Polypeptide F) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Minor Pathway and Transport of the SLBP independent Mature mRNA. Gene Ontology (GO) annotations related to this gene include RNA binding. An important paralog of this gene is LSM6.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000266735LSMPF01423.221e-2011
ENSP00000447751LSMPF01423.228.6e-1011
ENSP00000447127LSMPF01423.222.4e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
27417296Structure-function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring.RNA2016 SepSchwer Bdoi: 10.1261/rna.057448.116
12618433Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA. Crystal structure of an oligomeric complex of yeast SmF.J Biol Chem2003 May 9Collins BM-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000553192SNRPF-205552-ENSP0000044775167 (aa)-A0A0B4J254
ENST00000266735SNRPF-2011389-ENSP0000026673586 (aa)-P62306
ENST00000551316SNRPF-203787--- (aa)--
ENST00000552085SNRPF-204815-ENSP00000447127127 (aa)-F8W0W6
ENST00000549580SNRPF-202757--- (aa)--
Gene Model
Click here to download ENSG00000139343's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000139343Platelet Function Tests6.0530042E-006-
ENSG00000139343Platelet Function Tests1.8505000E-005-
ENSG00000139343Lung Volume Measurements5E-828166213
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000139343rs10364291295877650?Pulmonary function (smoking interaction)23284291EFO_0003892|EFO_0005671|EFO_0004713
ENSG00000139343rs65386781295867790ALupus nephritis in systemic lupus erythematosus24925725[1.30-1.88]1.57EFO_0002690|EFO_0005761
ENSG00000139343rs14361241295889654GMenstruation quality of life impact (acne)29855537[0.092-0.238] unit decrease0.1649891EFO_0009366|EFO_0003894
ENSG00000139343rs128203131295861926CLung function (FEV1/FVC)28166213[0.028-0.06] unit decrease0.044EFO_0004713
ENSG00000139343rs10364291295877650TPulmonary function21946350[0.026-0.050] unit increase0.038EFO_0003892|EFO_0004713
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000139343's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000139343SNRPF7751.515ENSG00000164167LSM68351.515
ENSG00000139343SNRPF6938.462ENSG00000112081SRSF39638.462
ENSG00000139343SNRPF5341.791ENSG00000134419RPS15A5241.791
ENSG00000139343SNRPF6246.835ENSG00000152147GEMIN65846.835
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000139343SNRPF9997.647ENSAPOG00000003377snrpf6697.647Acanthochromis_polyacanthus
ENSG00000139343SNRPF99100.000ENSAMEG00000002166-100100.000Ailuropoda_melanoleuca
ENSG00000139343SNRPF8886.842ENSAMEG00000018718-8788.000Ailuropoda_melanoleuca
ENSG00000139343SNRPF9897.619ENSACIG00000013216snrpf9997.619Amphilophus_citrinellus
ENSG00000139343SNRPF9897.619ENSAOCG00000015108snrpf9997.619Amphiprion_ocellaris
ENSG00000139343SNRPF9897.619ENSAPEG00000022022snrpf9997.619Amphiprion_percula
ENSG00000139343SNRPF9897.619ENSATEG00000022625snrpf9097.619Anabas_testudineus
ENSG00000139343SNRPF9998.824ENSACAG00000014073SNRPF9898.824Anolis_carolinensis
ENSG00000139343SNRPF8391.549ENSANAG00000020297-6591.549Aotus_nancymaae
ENSG00000139343SNRPF100100.000ENSANAG00000032845SNRPF100100.000Aotus_nancymaae
ENSG00000139343SNRPF8769.333ENSANAG00000025860-8569.333Aotus_nancymaae
ENSG00000139343SNRPF9897.619ENSACLG00000016066snrpf9997.619Astatotilapia_calliptera
ENSG00000139343SNRPF8794.667ENSAMXG00000007421snrpf8794.667Astyanax_mexicanus
ENSG00000139343SNRPF100100.000ENSBTAG00000016271SNRPF100100.000Bos_taurus
ENSG00000139343SNRPF9193.590ENSBTAG00000050012-9393.333Bos_taurus
ENSG00000139343SNRPF9072.727WBGene00004918snr-58575.000Caenorhabditis_elegans
ENSG00000139343SNRPF100100.000ENSCJAG00000002705-100100.000Callithrix_jacchus
ENSG00000139343SNRPF8591.781ENSCAFG00000031151-8594.521Canis_familiaris
ENSG00000139343SNRPF100100.000ENSCAFG00000006395-77100.000Canis_familiaris
ENSG00000139343SNRPF9188.462ENSCAFG00020013161-7497.143Canis_lupus_dingo
ENSG00000139343SNRPF8591.781ENSCAFG00020010823-8594.521Canis_lupus_dingo
ENSG00000139343SNRPF9493.827ENSTSYG00000031636-6195.890Carlito_syrichta
ENSG00000139343SNRPF8786.667ENSTSYG00000030635-8786.667Carlito_syrichta
ENSG00000139343SNRPF10094.253ENSTSYG00000036502-10094.253Carlito_syrichta
ENSG00000139343SNRPF99100.000ENSCAPG00000007242SNRPF100100.000Cavia_aperea
ENSG00000139343SNRPF100100.000ENSCPOG00000013898SNRPF100100.000Cavia_porcellus
ENSG00000139343SNRPF100100.000ENSCCAG00000037378-100100.000Cebus_capucinus
ENSG00000139343SNRPF10088.372ENSCCAG00000033627-5989.333Cebus_capucinus
ENSG00000139343SNRPF10098.837ENSCCAG00000017356-10098.837Cebus_capucinus
ENSG00000139343SNRPF100100.000ENSCLAG00000007200SNRPF100100.000Chinchilla_lanigera
ENSG00000139343SNRPF100100.000ENSCSAG00000003602-70100.000Chlorocebus_sabaeus
ENSG00000139343SNRPF74100.000ENSCHOG00000009392SNRPF100100.000Choloepus_hoffmanni
ENSG00000139343SNRPF9994.118ENSCPBG00000024287-6794.118Chrysemys_picta_bellii
ENSG00000139343SNRPF8792.000ENSCPBG00000006227-8792.000Chrysemys_picta_bellii
ENSG00000139343SNRPF10088.372ENSCPBG00000001985-8990.667Chrysemys_picta_bellii
ENSG00000139343SNRPF10089.535ENSCPBG00000026463-8790.667Chrysemys_picta_bellii
ENSG00000139343SNRPF9987.059ENSCSAVG00000007498-8489.189Ciona_savignyi
ENSG00000139343SNRPF8792.000ENSCGRG00001008965-5892.000Cricetulus_griseus_chok1gshd
ENSG00000139343SNRPF100100.000ENSCGRG00001017100-100100.000Cricetulus_griseus_chok1gshd
ENSG00000139343SNRPF100100.000ENSCGRG00000000336-100100.000Cricetulus_griseus_crigri
ENSG00000139343SNRPF9392.500ENSCGRG00000018878-9492.000Cricetulus_griseus_crigri
ENSG00000139343SNRPF8796.000ENSCSEG00000004748snrpf8796.000Cynoglossus_semilaevis
ENSG00000139343SNRPF9997.647ENSCVAG00000000397snrpf6797.647Cyprinodon_variegatus
ENSG00000139343SNRPF10095.455ENSDARG00000105037snrpf10095.455Danio_rerio
ENSG00000139343SNRPF10098.837ENSDNOG00000048989-7798.837Dasypus_novemcinctus
ENSG00000139343SNRPF100100.000ENSDNOG00000043775-55100.000Dasypus_novemcinctus
ENSG00000139343SNRPF8784.000ENSDNOG00000049373-6584.000Dasypus_novemcinctus
ENSG00000139343SNRPF8198.571ENSDORG00000029740-8598.571Dipodomys_ordii
ENSG00000139343SNRPF8488.889ENSDORG00000025351-10088.889Dipodomys_ordii
ENSG00000139343SNRPF9878.571FBgn0000426SmF8382.192Drosophila_melanogaster
ENSG00000139343SNRPF100100.000ENSETEG00000001558-100100.000Echinops_telfairi
ENSG00000139343SNRPF9575.610ENSEBUG00000001793-7286.567Eptatretus_burgeri
ENSG00000139343SNRPF100100.000ENSECAG00000019817SNRPF70100.000Equus_caballus
ENSG00000139343SNRPF99100.000ENSEEUG00000013509SNRPF100100.000Erinaceus_europaeus
ENSG00000139343SNRPF10091.860ENSELUG00000007737RUXF8693.333Esox_lucius
ENSG00000139343SNRPF8794.667ENSELUG00000003121RUXF8794.667Esox_lucius
ENSG00000139343SNRPF9878.571ENSFCAG00000031148-7276.923Felis_catus
ENSG00000139343SNRPF8776.000ENSFCAG00000021942-8776.000Felis_catus
ENSG00000139343SNRPF100100.000ENSFCAG00000029966-100100.000Felis_catus
ENSG00000139343SNRPF99100.000ENSFALG00000010799SNRPF99100.000Ficedula_albicollis
ENSG00000139343SNRPF100100.000ENSFDAG00000002831-100100.000Fukomys_damarensis
ENSG00000139343SNRPF9997.647ENSFHEG00000003240snrpf7597.647Fundulus_heteroclitus
ENSG00000139343SNRPF9997.647ENSGMOG00000007741snrpf10097.647Gadus_morhua
ENSG00000139343SNRPF100100.000ENSGALG00000011409SNRPF100100.000Gallus_gallus
ENSG00000139343SNRPF9897.619ENSGAFG00000016187snrpf9797.619Gambusia_affinis
ENSG00000139343SNRPF9996.471ENSGACG00000020055snrpf10096.471Gasterosteus_aculeatus
ENSG00000139343SNRPF7091.667ENSGAGG00000011163-10091.667Gopherus_agassizii
ENSG00000139343SNRPF8086.957ENSGAGG00000014132-8386.957Gopherus_agassizii
ENSG00000139343SNRPF9291.139ENSGAGG00000022991-8094.118Gopherus_agassizii
ENSG00000139343SNRPF7296.774ENSGAGG00000020974-5296.774Gopherus_agassizii
ENSG00000139343SNRPF8693.243ENSGAGG00000012945-6994.667Gopherus_agassizii
ENSG00000139343SNRPF9880.952ENSGGOG00000039936-8378.667Gorilla_gorilla
ENSG00000139343SNRPF9275.949ENSGGOG00000039564-9074.667Gorilla_gorilla
ENSG00000139343SNRPF100100.000ENSGGOG00000001127-100100.000Gorilla_gorilla
ENSG00000139343SNRPF10098.837ENSHGLG00000021172-10098.837Heterocephalus_glaber_female
ENSG00000139343SNRPF100100.000ENSHGLG00000009108SNRPF100100.000Heterocephalus_glaber_female
ENSG00000139343SNRPF10098.837ENSHGLG00100019596-10098.837Heterocephalus_glaber_male
ENSG00000139343SNRPF99100.000ENSHGLG00100008103-100100.000Heterocephalus_glaber_male
ENSG00000139343SNRPF7385.714ENSHCOG00000018663snrpf5585.714Hippocampus_comes
ENSG00000139343SNRPF10097.674ENSIPUG00000018994snrpf10097.674Ictalurus_punctatus
ENSG00000139343SNRPF100100.000ENSSTOG00000010434-100100.000Ictidomys_tridecemlineatus
ENSG00000139343SNRPF10081.395ENSJJAG00000004558-8982.667Jaculus_jaculus
ENSG00000139343SNRPF7894.030ENSJJAG00000004828-10094.030Jaculus_jaculus
ENSG00000139343SNRPF100100.000ENSJJAG00000011272-100100.000Jaculus_jaculus
ENSG00000139343SNRPF10084.884ENSJJAG00000010502-8986.667Jaculus_jaculus
ENSG00000139343SNRPF10096.512ENSKMAG00000013566snrpf10096.512Kryptolebias_marmoratus
ENSG00000139343SNRPF10096.512ENSLBEG00000008800snrpf10096.512Labrus_bergylta
ENSG00000139343SNRPF10098.837ENSLACG00000002456-7498.837Latimeria_chalumnae
ENSG00000139343SNRPF8794.667ENSLOCG00000015744snrpf8794.667Lepisosteus_oculatus
ENSG00000139343SNRPF99100.000ENSLAFG00000017426SNRPF99100.000Loxodonta_africana
ENSG00000139343SNRPF9896.429ENSMAMG00000016593snrpf9996.429Mastacembelus_armatus
ENSG00000139343SNRPF9897.619ENSMZEG00005014701snrpf9997.619Maylandia_zebra
ENSG00000139343SNRPF98100.000ENSMGAG00000011453-76100.000Meleagris_gallopavo
ENSG00000139343SNRPF9774.699ENSMAUG00000010289-9674.699Mesocricetus_auratus
ENSG00000139343SNRPF86100.000ENSMAUG00000016909-100100.000Mesocricetus_auratus
ENSG00000139343SNRPF86100.000ENSMAUG00000019737-100100.000Mesocricetus_auratus
ENSG00000139343SNRPF8794.667ENSMAUG00000008799-8794.667Mesocricetus_auratus
ENSG00000139343SNRPF8793.333ENSMICG00000030494-6093.333Microcebus_murinus
ENSG00000139343SNRPF100100.000ENSMICG00000012153-100100.000Microcebus_murinus
ENSG00000139343SNRPF7983.824ENSMOCG00000020220-8783.824Microtus_ochrogaster
ENSG00000139343SNRPF8785.333ENSMOCG00000022166-8285.333Microtus_ochrogaster
ENSG00000139343SNRPF100100.000ENSMOCG00000020437Snrpf100100.000Microtus_ochrogaster
ENSG00000139343SNRPF9996.471ENSMMOG00000007127snrpf10096.471Mola_mola
ENSG00000139343SNRPF100100.000ENSMODG00000008091SNRPF75100.000Monodelphis_domestica
ENSG00000139343SNRPF9897.619ENSMALG00000012328snrpf9997.619Monopterus_albus
ENSG00000139343SNRPF100100.000MGP_CAROLIEiJ_G0015735-100100.000Mus_caroli
ENSG00000139343SNRPF100100.000ENSMUSG00000020018Snrpf100100.000Mus_musculus
ENSG00000139343SNRPF100100.000MGP_PahariEiJ_G0031350Snrpf100100.000Mus_pahari
ENSG00000139343SNRPF100100.000MGP_SPRETEiJ_G0016553Snrpf100100.000Mus_spretus
ENSG00000139343SNRPF100100.000ENSMPUG00000007176-77100.000Mustela_putorius_furo
ENSG00000139343SNRPF100100.000ENSMLUG00000027932-81100.000Myotis_lucifugus
ENSG00000139343SNRPF100100.000ENSMLUG00000029201-81100.000Myotis_lucifugus
ENSG00000139343SNRPF99100.000ENSMLUG00000013577-100100.000Myotis_lucifugus
ENSG00000139343SNRPF100100.000ENSMLUG00000026149-81100.000Myotis_lucifugus
ENSG00000139343SNRPF10080.233ENSMLUG00000026269-7178.667Myotis_lucifugus
ENSG00000139343SNRPF7390.476ENSNGAG00000005851-7190.000Nannospalax_galili
ENSG00000139343SNRPF100100.000ENSNGAG00000024292-100100.000Nannospalax_galili
ENSG00000139343SNRPF9997.647ENSNBRG00000011682snrpf8797.647Neolamprologus_brichardi
ENSG00000139343SNRPF63100.000ENSMEUG00000000671SNRPF8770.270Notamacropus_eugenii
ENSG00000139343SNRPF100100.000ENSODEG00000010328-100100.000Octodon_degus
ENSG00000139343SNRPF10098.837ENSOCUG00000010925SNRPF7698.837Oryctolagus_cuniculus
ENSG00000139343SNRPF8694.595ENSORLG00020008216snrpf8794.595Oryzias_latipes_hni
ENSG00000139343SNRPF8694.595ENSORLG00015007418snrpf8794.595Oryzias_latipes_hsok
ENSG00000139343SNRPF9896.429ENSOMEG00000003018snrpf9996.429Oryzias_melastigma
ENSG00000139343SNRPF10097.674ENSOGAG00000030323-10097.674Otolemur_garnettii
ENSG00000139343SNRPF100100.000ENSOARG00000011853-75100.000Ovis_aries
ENSG00000139343SNRPF9275.949ENSPPAG00000037479-9174.667Pan_paniscus
ENSG00000139343SNRPF9880.952ENSPPAG00000037544-8378.667Pan_paniscus
ENSG00000139343SNRPF100100.000ENSPPRG00000005875-100100.000Panthera_pardus
ENSG00000139343SNRPF9877.381ENSPPRG00000007449-7777.333Panthera_pardus
ENSG00000139343SNRPF9879.762ENSPTIG00000005117-8977.333Panthera_tigris_altaica
ENSG00000139343SNRPF100100.000ENSPTIG00000007520SNRPF100100.000Panthera_tigris_altaica
ENSG00000139343SNRPF9880.952ENSPTRG00000043814-8378.667Pan_troglodytes
ENSG00000139343SNRPF9275.949ENSPTRG00000047717-9174.667Pan_troglodytes
ENSG00000139343SNRPF9997.647ENSPKIG00000014784snrpf9397.647Paramormyrops_kingsleyae
ENSG00000139343SNRPF99100.000ENSPSIG00000016462SNRPF99100.000Pelodiscus_sinensis
ENSG00000139343SNRPF9996.471ENSPMGG00000023548snrpf10096.471Periophthalmus_magnuspinnatus
ENSG00000139343SNRPF100100.000ENSPEMG00000023326Snrpf100100.000Peromyscus_maniculatus_bairdii
ENSG00000139343SNRPF9897.619ENSPLAG00000023932snrpf9997.619Poecilia_latipinna
ENSG00000139343SNRPF9897.619ENSPMEG00000003377snrpf9997.619Poecilia_mexicana
ENSG00000139343SNRPF9897.619ENSPREG00000022635snrpf9797.619Poecilia_reticulata
ENSG00000139343SNRPF100100.000ENSPPYG00000004847-100100.000Pongo_abelii
ENSG00000139343SNRPF100100.000ENSPCOG00000023833-100100.000Propithecus_coquereli
ENSG00000139343SNRPF100100.000ENSPVAG00000009036SNRPF100100.000Pteropus_vampyrus
ENSG00000139343SNRPF9897.619ENSPNYG00000021712snrpf9997.619Pundamilia_nyererei
ENSG00000139343SNRPF9896.429ENSPNAG00000019117snrpf9996.429Pygocentrus_nattereri
ENSG00000139343SNRPF100100.000ENSRNOG00000005556Snrpf100100.000Rattus_norvegicus
ENSG00000139343SNRPF10096.512ENSRBIG00000030414-10096.512Rhinopithecus_bieti
ENSG00000139343SNRPF10096.512ENSRROG00000021975-10096.512Rhinopithecus_roxellana
ENSG00000139343SNRPF8159.155YPR182WSMX38359.155Saccharomyces_cerevisiae
ENSG00000139343SNRPF9180.247ENSSBOG00000027638-9180.247Saimiri_boliviensis_boliviensis
ENSG00000139343SNRPF8785.333ENSSBOG00000032297-8685.333Saimiri_boliviensis_boliviensis
ENSG00000139343SNRPF10098.837ENSSBOG00000012868-10098.837Saimiri_boliviensis_boliviensis
ENSG00000139343SNRPF100100.000ENSSBOG00000036179-100100.000Saimiri_boliviensis_boliviensis
ENSG00000139343SNRPF99100.000ENSSHAG00000012294SNRPF77100.000Sarcophilus_harrisii
ENSG00000139343SNRPF7496.875ENSSFOG00015021523snrpf9696.875Scleropages_formosus
ENSG00000139343SNRPF8794.667ENSSMAG00000005533snrpf8694.667Scophthalmus_maximus
ENSG00000139343SNRPF7696.923ENSSDUG00000016283snrpf7796.923Seriola_dumerili
ENSG00000139343SNRPF9373.750ENSSLDG00000003885-9077.027Seriola_lalandi_dorsalis
ENSG00000139343SNRPF10096.512ENSSLDG00000005119snrpf10096.512Seriola_lalandi_dorsalis
ENSG00000139343SNRPF98100.000ENSSPUG00000014590-99100.000Sphenodon_punctatus
ENSG00000139343SNRPF9997.647ENSSPAG00000003283snrpf9797.647Stegastes_partitus
ENSG00000139343SNRPF100100.000ENSSSCG00000000895SNRPF100100.000Sus_scrofa
ENSG00000139343SNRPF6794.828ENSTRUG00000014956snrpf8494.828Takifugu_rubripes
ENSG00000139343SNRPF10096.512ENSTNIG00000012672snrpf10096.512Tetraodon_nigroviridis
ENSG00000139343SNRPF64100.000ENSTTRG00000006070SNRPF8770.667Tursiops_truncatus
ENSG00000139343SNRPF10087.209ENSUAMG00000001101-8889.333Ursus_americanus
ENSG00000139343SNRPF100100.000ENSUAMG00000008176-100100.000Ursus_americanus
ENSG00000139343SNRPF100100.000ENSUMAG00000003528-100100.000Ursus_maritimus
ENSG00000139343SNRPF8789.333ENSUMAG00000006177-8889.333Ursus_maritimus
ENSG00000139343SNRPF100100.000ENSVPAG00000008712-100100.000Vicugna_pacos
ENSG00000139343SNRPF9192.308ENSVVUG00000023821-9692.000Vulpes_vulpes
ENSG00000139343SNRPF6497.674ENSXETG00000021630snrpf8775.000Xenopus_tropicalis
ENSG00000139343SNRPF9897.619ENSXCOG00000013860snrpf9797.619Xiphophorus_couchianus
ENSG00000139343SNRPF9897.619ENSXMAG00000015448snrpf9997.619Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly18984161.IDAProcess
GO:0000387spliceosomal snRNP assembly-TASProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome28076346.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding7744013.IMPFunction
GO:0005515protein binding9417867.15231747.18984161.21816274.22365833.25416956.IPIFunction
GO:0005634nucleus28076346.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex7744013.IDAComponent
GO:0005683U7 snRNP11574479.IDAComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP21113136.25555158.IDAComponent
GO:0005687U4 snRNP21516107.IDAComponent
GO:0005689U12-type spliceosomal complex15146077.IDAComponent
GO:0005732small nucleolar ribonucleoprotein complex-IEAComponent
GO:0005829cytosol18984161.IDAComponent
GO:0005829cytosol-TASComponent
GO:0006369termination of RNA polymerase II transcription-TASProcess
GO:0008334histone mRNA metabolic process-TASProcess
GO:0008380RNA splicing7744013.IMPProcess
GO:0030532small nuclear ribonucleoprotein complex11991638.IDAComponent
GO:0034709methylosome18984161.IDAComponent
GO:0034715pICln-Sm protein complex18984161.IDAComponent
GO:0034719SMN-Sm protein complex18984161.IDAComponent
GO:0046540U4/U6 x U5 tri-snRNP complex26912367.IDAComponent
GO:0051170import into nucleus-TASProcess
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent
GO:0071007U2-type catalytic step 2 spliceosome28076346.IDAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent
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