EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
29848298IFI44L is a novel tumor suppressor in human hepatocellular carcinoma affecting cancer stemness, metastasis, and drug resistance via regulating met/Src signaling pathway.BMC Cancer2018 May 30Huang WCdoi: 10.1186/s12885-018-4529-9.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr178637154Frame_Shift_InsnovelM335Nfs*250.31MMR_HSR1
BLCAchr178641783Missense_MutationNAE445K0.28
BLCAchr178635350Missense_MutationnovelS246F0.29MMR_HSR1
BLCAchr178635358Missense_MutationNAD249Y0.46MMR_HSR1
BLCAchr178641082Frame_Shift_InsnovelL372Ffs*50.43
BLCAchr178637089Missense_MutationNAL312V0.18MMR_HSR1
BLCAchr178627987Missense_MutationNAL24F0.56
BRCAchr178641498Missense_MutationNAA405P0.17
BRCAchr178635417SilentnovelG268G0.05
BRCAchr178628177Frame_Shift_InsnovelQ88Lfs*210.18
CESCchr178628359SilentnovelR148R0.53
CESCchr178641074Nonsense_MutationNAQ368*0.13
COADchr178637061SilentNAE302E0.17
COADchr178635372SilentNAG253G0.23
COADchr178627962Missense_Mutationrs768684222R16H0.57
COADchr178641588Missense_MutationNAD435Y0.23
COADchr178637131Missense_MutationNAN326D0.25MMR_HSR1
COADchr178629878Missense_Mutationrs761494321A229D0.1MMR_HSR1
COADchr178641791Silentrs200301854A447A0.1
COADchr178628259Missense_MutationNAR115H0.36
COADchr178637061SilentNAE302E0.12
COADchr1786419523'UTRnovel0.37
COADchr178628292Missense_Mutationrs546691087R126Q0.48
COADchr178641064SilentnovelS364S0.19
ESCAchr178628157Missense_Mutationrs75343387D81V0.27
ESCAchr178641808Nonstop_Mutationnovel*453Lext*50.35
ESCAchr178641533SilentnovelI416I0.08
ESCAchr178629850Missense_Mutationrs770941163I220V0.35MMR_HSR1
GBMchr178628970SilentNAD166D0.42
GBMchr178628266Silentrs200570011S117S0.29
GBMchr178641046SilentnovelT358T0.15
GBMchr1786418493'UTRnovel0.39
GBMchr178629718Splice_SitenovelX176_splice0.09
GBMchr178628343Missense_MutationnovelR143M0.08
GBMchr178635398In_Frame_DelnovelT263_Y291del0.06MMR_HSR1
HNSCchr178629827Frame_Shift_InsnovelN215Qfs*200.24MMR_HSR1
HNSCchr178641808Nonstop_Mutationnovel*453Sext*50.35
HNSCchr178628312Missense_MutationnovelD133Y0.28
HNSCchr178641071Missense_MutationnovelL367I0.67
HNSCchr178628052Missense_Mutationrs149202070R46H0.35
HNSCchr178628260Silentrs756432982R115R0.29
KIRCchr178635481In_Frame_DelnovelR290_Q292del0.11MMR_HSR1
KIRCchr178629897Nonsense_MutationnovelT236Cfs*20.04MMR_HSR1
LGGchr178629838Missense_MutationnovelS216T0.08MMR_HSR1
LGGchr178629839Nonsense_MutationnovelV217*0.08MMR_HSR1
LIHCchr178637111Missense_MutationnovelV319A0.25MMR_HSR1
LIHCchr178641450Missense_MutationnovelK389E0.05
LIHCchr178629771Missense_MutationnovelD193E0.42
LUADchr178641510Missense_MutationnovelE409Q0.11
LUADchr178641600Missense_MutationNAE439Q0.1
LUADchr178637076SilentNAI307I0.16
LUADchr178635431Missense_MutationnovelG273A0.35MMR_HSR1
LUADchr178628052Missense_MutationnovelR46L0.06
LUADchr178635381SilentnovelL256L0.15
LUADchr178641790Missense_MutationNAA447G0.49
LUADchr178628981Missense_MutationNAR170M0.55
LUADchr178637078Frame_Shift_DelnovelS309Lfs*40.08MMR_HSR1
LUADchr178628222Missense_MutationnovelT103A0.1
LUADchr178641510Nonsense_MutationnovelE409*0.38
LUADchr178627987Missense_MutationnovelL24F0.34
LUADchr178641520Missense_MutationnovelP412H0.33
LUADchr178628228Frame_Shift_DelnovelP105Qfs*280.38
LUADchr178641025SilentnovelI351I0.55
LUADchr1786418783'UTRnovel0.22
LUADchr178628950Splice_SitenovelX160_splice0.36
LUADchr178628951Missense_MutationnovelG160V0.38
LUADchr178635336Splice_SitenovelX242_splice0.19
LUADchr178641808Nonstop_Mutationnovel*453Lext*50.22
LUADchr178635439Missense_MutationNAM276L0.06MMR_HSR1
LUSCchr178641492Missense_MutationNAN403Y0.29
LUSCchr178629844Missense_MutationNAK218Q0.24MMR_HSR1
LUSCchr178628182SilentnovelK89K0.32
LUSCchr1786418933'UTRnovel0.36
LUSCchr178635481Nonsense_MutationNAR290*0.12MMR_HSR1
LUSCchr178635427Missense_Mutationrs575130272A272T0.4MMR_HSR1
LUSCchr178629748Missense_MutationNAR186G0.15
LUSCchr178641465Missense_MutationNAP394S0.22
LUSCchr178641594Missense_MutationnovelP437S0.69
LUSCchr1786418903'UTRnovel0.28
LUSCchr178627987Missense_MutationNAL24F0.46
LUSCchr178641585Nonsense_MutationnovelE434*0.09
MESOchr178629769Missense_MutationnovelD193N0.56
OVchr178628051Missense_MutationNAR46C0.25
OVchr178628970Missense_MutationNAD166E0.12
OVchr178641098Frame_Shift_DelnovelR376Dfs*30.04
OVchr178627962Missense_MutationNAR16P0.28
PAADchr178628979Missense_MutationnovelK169N0.1
PAADchr178637120Missense_MutationnovelV322D0.24MMR_HSR1
PAADchr178628160Missense_Mutationrs781138097S82F0.03
PRADchr1786418243'UTRnovel0.06
READchr178628051Missense_MutationNAR46C0.12
READchr178627939SilentnovelT8T0.3
READchr178635336Splice_SitenovelX242_splice0.42
READchr1786420773'UTRnovel0.4
READchr178628971Missense_MutationNAD167N0.29
SARCchr178637166Frame_Shift_DelnovelV339*0.51MMR_HSR1
SARCchr178637170Missense_MutationnovelV339L0.5MMR_HSR1
SARCchr178629822Missense_MutationnovelK210N0.11MMR_HSR1
SKCMchr178635398Missense_MutationNAD262V0.25MMR_HSR1
SKCMchr178627955Missense_MutationNAH14Y0.31
SKCMchr1786419183'UTRnovel0.25
SKCMchr178628111Missense_MutationnovelL66F0.18
SKCMchr178628395Splice_SitenovelX160_splice0.27
SKCMchr178635442Missense_Mutationrs777051846D277N0.14MMR_HSR1
SKCMchr178628320Missense_MutationNAM135I0.29
SKCMchr178629875Missense_MutationNAQ228L0.45MMR_HSR1
SKCMchr178628265Missense_Mutationrs370772828S117L0.86
SKCMchr178635425Missense_MutationNAG271E0.21MMR_HSR1
SKCMchr178628273Missense_Mutationrs777441989D120N0.25
STADchr178637174Missense_MutationNAK340R0.39MMR_HSR1
STADchr178629836Missense_MutationnovelN215I0.08MMR_HSR1
STADchr178628168Missense_MutationNAF85L0.11
STADchr1786419763'UTRnovel0.29
STADchr178641446SilentnovelV387V0.43
STADchr178635362Frame_Shift_InsnovelN252Kfs*110.17MMR_HSR1
STADchr178628254SilentNAV113V0.09
STADchr178635428Missense_MutationnovelA272E0.13MMR_HSR1
STADchr178637108Missense_Mutationrs374146000C318Y0.15MMR_HSR1
STADchr178629913Missense_Mutationrs780019224R241W0.26MMR_HSR1
STADchr178641517Missense_MutationNAD411G0.29
STADchr178627957Missense_MutationNAH14Q0.25
STADchr178628388Missense_MutationNAV158A0.09
STADchr178627961Missense_Mutationrs369648433R16C0.19
STADchr178629739Missense_MutationNAA183T0.46
TGCTchr1786418183'UTRnovel0.31
THCAchr178629839Missense_MutationnovelS216L0.02MMR_HSR1
UCECchr178628291Nonsense_Mutationrs770275936R126*0.1
UCECchr178628252Missense_MutationnovelV113M0.32
UCECchr178637099Missense_MutationnovelR315M0.2MMR_HSR1
UCECchr178628204Nonsense_MutationNAE97*0.36
UCECchr178629853Missense_MutationnovelF221V0.4MMR_HSR1
UCECchr178628103Missense_MutationnovelA63V0.31
UCECchr178629787Missense_Mutationrs202037753R199C0.15MMR_HSR1
UCECchr178628981Missense_MutationNAR170M0.17
UCECchr178629822Silentrs139856302K210K0.17
UCECchr178628177Frame_Shift_InsnovelQ88Lfs*210.04
UCECchr1786420413'UTRnovel0.12
UCECchr1786419413'UTRnovel0.34
UCECchr178629768SilentNAA192A0.21
UCECchr178635358Missense_MutationNAD249Y0.16MMR_HSR1
UCECchr178641117Missense_MutationNAS382N0.35
UCECchr178628118Missense_MutationnovelN68T0.4
UCECchr178629787Missense_Mutationrs202037753R199C0.42MMR_HSR1
UCECchr178628356SilentnovelH147H0.23
UCECchr1786418763'UTRnovel0.16
UCECchr178641551SilentNAL422L0.15
UCECchr178637159Missense_MutationnovelM335R0.14MMR_HSR1
UCECchr178628266Silentrs200570011S117S0.17
UCECchr178627926Missense_MutationnovelT4I0.31
UCECchr178628322Missense_MutationnovelI136T0.38
UCECchr178628160Missense_MutationnovelS82Y0.31
UCECchr1786419673'UTRnovel0.53
UCECchr178628077Frame_Shift_DelnovelI56Afs*60.29
UCECchr178629897SilentNAI235I0.3
UCECchr178629725Missense_MutationnovelR178I0.1
UCECchr178628230Frame_Shift_DelnovelI107Lfs*260.41
UCECchr178628056Missense_MutationNAQ47H0.26
UCECchr178635437Missense_MutationnovelC275Y0.35MMR_HSR1
UCECchr178641020Splice_SitenovelX350_splice0.18
UCECchr178641527Missense_MutationnovelK414N0.21
UCECchr178627929Missense_Mutationrs375524121T5I0.1
UCECchr178637201Missense_MutationnovelC349Y0.36
UCECchr178628236SilentnovelI107I0.31
UCECchr178641588Missense_MutationNAD435Y0.48
UCECchr178637036Missense_MutationNAN294T0.42MMR_HSR1
UCECchr178628266Silentrs200570011S117S0.41
UCECchr178629787Missense_Mutationrs202037753R199C0.08MMR_HSR1
UCECchr178641102Missense_MutationnovelS377F0.24
UCECchr178641551SilentNAL422L0.28
UCECchr178641111Missense_MutationnovelS380Y0.35
UCECchr178628305SilentnovelI130I0.37
UCECchr178628052Missense_Mutationrs149202070R46H0.3
UCECchr178635379Missense_MutationnovelL256M0.23MMR_HSR1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
COADDEL0.24610.00038973
STADDEL0.15650.0040659
TGCTAMP0.15330.088103

Survival Analysis
CancerP-value Q-value
SKCM0.00012

Kaplan-Meier Survival Analysis

TGCT0.026

Kaplan-Meier Survival Analysis

KIRP0.016

Kaplan-Meier Survival Analysis

PAAD0.00089

Kaplan-Meier Survival Analysis

UCEC0.01

Kaplan-Meier Survival Analysis

GBM0.0059

Kaplan-Meier Survival Analysis

LGG0.00053

Kaplan-Meier Survival Analysis

UVM0.016

Kaplan-Meier Survival Analysis

OV0.0096

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000137959 (Gene tree)
Gene ID
10964
Gene Symbol
IFI44L
Alias
GS3686|C1orf29
Full Name
interferon induced protein 44 like
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
26,224 bases
Position
chr1:78,619,922-78,646,145
Accession
17817
RBP type
canonical RBP
Summary
IFI44L (Interferon Induced Protein 44 Like) is a Protein Coding gene. An important paralog of this gene is IFI44.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000359787MMR_HSR1PF01926.230.0002511
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000370751IFI44L-2015874XM_005270391ENSP00000359787452 (aa)XP_005270448Q53G44
ENST00000450498IFI44L-202849-ENSP00000400784232 (aa)-H7C1K6
ENST00000462041IFI44L-205565--- (aa)--
ENST00000476876IFI44L-208890--- (aa)--
ENST00000486882IFI44L-2095152--- (aa)--
ENST00000494910IFI44L-210664--- (aa)--
ENST00000452835IFI44L-203554-ENSP0000040991497 (aa)-C9JPJ0
ENST00000474002IFI44L-206928--- (aa)--
ENST00000476521IFI44L-2071162--- (aa)--
ENST00000459784IFI44L-204745--- (aa)--
Gene Model
Click here to download ENSG00000137959's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000137959Seizures, Febrile1E-925344690
ENSG00000137959Seizures, Febrile6E-1225344690
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000137959rs273259178628133AFebrile seizures25344690[1.27-1.59]1.42HP_0002373|EFO_0006519
ENSG00000137959rs273259178628133AFebrile seizures (MMR vaccine-related)25344690[1.28-1.55]1.41EFO_0006519
ENSG00000137959rs1333973178628396AImmune response to measles vaccine (measles-specific neutralising antibody titre)28289848EFO_0004645
ENSG00000137959rs1333973178628396AImmune response to measles vaccine (measles-specific neutralising antibody titre)28289848EFO_0004645
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000137959's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000137959IFI44L9982.040ENSANAG00000025193IFI44L9982.040Aotus_nancymaae
ENSG00000137959IFI44L10080.353ENSCCAG00000034830IFI44L10080.353Cebus_capucinus
ENSG00000137959IFI44L10091.753ENSCATG00000030541IFI44L10089.381Cercocebus_atys
ENSG00000137959IFI44L10091.753ENSCSAG00000001407IFI44L10088.496Chlorocebus_sabaeus
ENSG00000137959IFI44L10090.722ENSCANG00000032603IFI44L10089.602Colobus_angolensis_palliatus
ENSG00000137959IFI44L9761.435ENSLAFG00000018293IFI44L10061.435Loxodonta_africana
ENSG00000137959IFI44L10091.753ENSMFAG00000035946IFI44L10089.823Macaca_fascicularis
ENSG00000137959IFI44L10091.753ENSMMUG00000001569IFI44L10089.602Macaca_mulatta
ENSG00000137959IFI44L10091.753ENSMNEG00000010138IFI44L10090.044Macaca_nemestrina
ENSG00000137959IFI44L10090.722ENSMLEG00000025798IFI44L10089.381Mandrillus_leucophaeus
ENSG00000137959IFI44L9860.090ENSOCUG00000024378IFI44L9960.090Oryctolagus_cuniculus
ENSG00000137959IFI44L10091.753ENSPANG00000009471IFI44L10089.602Papio_anubis
ENSG00000137959IFI44L10095.876ENSPPYG00000001215IFI44L10093.805Pongo_abelii
ENSG00000137959IFI44L9854.402ENSRNOG00000049994Ifi44l9954.402Rattus_norvegicus
ENSG00000137959IFI44L10090.722ENSRBIG00000028526IFI44L10090.044Rhinopithecus_bieti
ENSG00000137959IFI44L10090.722ENSRROG00000036097IFI44L10090.265Rhinopithecus_roxellana
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003674molecular_function-NDFunction
GO:0005525GTP binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005737cytoplasm-IEAComponent
GO:0006955immune response21873635.IBAProcess
GO:0051607defense response to virus21478870.IDAProcess
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us