EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
23722670miR-9 functions as a tumor suppressor in ovarian serous carcinoma by targeting TLN1.Int J Mol Med2013 AugTang Hdoi: 10.3892/ijmm.2013.1400
24891603Talin regulates moesin-NHE-1 recruitment to invadopodia and promotes mammary tumor metastasis.J Cell Biol2014 Jun 9Beaty BTdoi: 10.1083/jcb.201312046
23204516Cathepsin H mediates the processing of talin and regulates migration of prostate cancer cells.J Biol Chem2013 Jan 25Jevnikar Zdoi: 10.1074/jbc.M112.436394
24793790Talin1 phosphorylation activates β1 integrins: a novel mechanism to promote prostate cancer bone metastasis.Oncogene2015 Apr 2Jin JKdoi: 10.1038/onc.2014.116
23479679A targeted RNAi screen of the breast cancer genome identifies KIF14 and TLN1 as genes that modulate docetaxel chemosensitivity in triple-negative breast cancer.Clin Cancer Res2013 Apr 15Singel SMdoi: 10.1158/1078-0432.CCR-13-0082
24761880Talin-1 correlates with reduced invasion and migration in human hepatocellular carcinoma cells.Asian Pac J Cancer Prev2014Fang KP-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr935720209SilentnovelL432L0.23
ACCchr935716440Missense_MutationnovelA859T0.86
ACCchr935715148Missense_Mutationrs749822890R889W0.06
BLCAchr935714612Nonsense_MutationnovelQ983*0.45
BLCAchr935706195Splice_SitenovelX1787_splice0.36
BLCAchr935697857SilentNAK2520K0.17
BLCAchr935698828Missense_MutationNAE2369Q0.35
BLCAchr935725309Missense_MutationnovelG48E0.25
BLCAchr935700253Missense_MutationnovelD2200N0.43
BLCAchr935705824Missense_MutationnovelE1847Q0.24
BLCAchr935698320Splice_Regionnovel0.11
BLCAchr935703796Nonsense_MutationnovelW2112*0.26
BLCAchr935700305SilentNAI2182I0.07
BLCAchr935720217Missense_MutationnovelS429L0.32
BLCAchr935710626Missense_MutationnovelE1421K0.09
BLCAchr935720451Missense_MutationnovelD422G0.49
BLCAchr935713031Missense_Mutationrs763888196R1122Q0.43
BLCAchr935714251Silentrs376495117T1036T0.09
BLCAchr935714021Missense_MutationnovelE1061Q0.68
BLCAchr935717695Missense_Mutationrs762426705S696L0.15
BLCAchr935716482Missense_MutationNAE845K0.06
BLCAchr935722216Missense_MutationnovelK284R0.24
BLCAchr935717152Missense_MutationnovelD818N0.1
BLCAchr935724037Missense_MutationnovelD233H0.08
BLCAchr935707205Missense_MutationnovelE1608K0.36
BRCAchr935703999Nonsense_MutationnovelE2075*0.4
BRCAchr935698402Frame_Shift_DelNAV2431Efs*230.21
BRCAchr935724603Missense_MutationnovelK160N0.04
BRCAchr935707174Missense_Mutationrs780560798R1618Q0.42
BRCAchr935713257SilentNAA1097A0.44
BRCAchr935711753Missense_Mutationrs770655381R1241W0.61
BRCAchr935700201Missense_Mutationrs769841997R2217Q0.23
BRCAchr935714851Nonsense_MutationNAS927*0.4
BRCAchr935718826Missense_MutationnovelD661N0.07
BRCAchr935711072Missense_MutationNAD1344N0.15
BRCAchr935724270SilentNAL192L0.38
BRCAchr935705646Missense_MutationNAE1880Q0.15
BRCAchr935722143Nonsense_MutationNAY308*0.15
BRCAchr935722144Missense_MutationNAY308C0.15
BRCAchr935706353Missense_Mutationrs775801466A1735V0.18
BRCAchr9356977463'UTRrs7761306870.19
BRCAchr935724612Missense_MutationnovelK157N0.1
BRCAchr935722180Missense_MutationNAV296A0.19
BRCAchr935724878Missense_MutationnovelD104N0.05
BRCAchr935707385Missense_MutationnovelP1579L0.24
BRCAchr935713280Missense_MutationNAD1090N0.29
BRCAchr935714769Missense_MutationNAQ954H0.5
BRCAchr935723957Silentrs755633555F259F0.13
BRCAchr935704105SilentNAG2039G0.35
BRCAchr935711761Missense_MutationNAA1238G0.69
BRCAchr935714651Missense_Mutationrs371183695V970I0.46
BRCAchr935710575Missense_MutationNAE1438K0.1
BRCAchr935720066Missense_MutationNAQ479H0.86
BRCAchr935708479SilentNAA1444A0.38
BRCAchr935717231SilentNAG791G0.15
CESCchr935717359Missense_Mutationrs746904145G749S0.33
CESCchr935704816Splice_SiteNAX1912_splice0.47
CESCchr935719570Missense_MutationnovelQ546E0.38
CESCchr935707748Missense_Mutationrs151033435L1539V0.18
CESCchr9356977183'UTRnovel0.23
CESCchr935715142Missense_Mutationrs770307539R891W0.55
CESCchr935717212Missense_MutationnovelY798H0.45
CESCchr935717721Missense_MutationNAK687N0.15
CESCchr935713254SilentNAV1098V0.33
CHOLchr935698457Missense_MutationnovelA2413T0.29
CHOLchr935704684SilentnovelR1955R0.45
COADchr935721670Missense_MutationNAA361V0.43
COADchr935714666SilentNAL965L0.18
COADchr935707805Missense_MutationNAT1520A0.26
COADchr935699369SilentnovelA2287A0.29
COADchr935710885Missense_Mutationrs752281502T1372M0.13
COADchr935725632Silentrs760882744P21P0.32
COADchr935704004Missense_MutationnovelD2073V0.45
COADchr935716394Missense_MutationnovelA874V0.3
COADchr935697804Missense_MutationnovelR2538Q0.12
COADchr9356977483'UTRnovel0.4
COADchr935724211Missense_MutationnovelL212P0.09
COADchr935708373Missense_MutationNAS1480G0.18
COADchr935698486Missense_MutationNAA2403V0.27
COADchr935700076SilentnovelA2222A0.35
COADchr935725729Splice_Sitenovel0.1
COADchr935722875Missense_MutationNAR277C0.18
COADchr935723860Intronnovel0.3
COADchr935712993Missense_Mutationrs146392528A1135T0.45
COADchr935720890SilentnovelG376G0.13
COADchr935712974Missense_MutationNAL1141P0.39
COADchr935711389Missense_MutationNAQ1295H0.13
COADchr935717753Missense_MutationnovelS677R0.07
COADchr935711657Nonsense_Mutationrs769049864R1273*0.37
COADchr935720503Frame_Shift_DelNAS405Afs*840.3
COADchr935725283Frame_Shift_InsNAK57Qfs*480.22
COADchr935715086SilentNAI909I0.12
COADchr935719518Splice_SiteNAX563_splice0.33
COADchr935713286Missense_MutationnovelT1088A0.19
COADchr935704342Missense_Mutationrs144809355A2013T0.62
COADchr935707144Frame_Shift_DelNAP1628Rfs*200.44
COADchr935725279Frame_Shift_DelnovelK58Rfs*310.09
COADchr935704345Missense_MutationNAF2012V0.23
COADchr935707796Missense_MutationNAR1523C0.35
COADchr935717762Missense_MutationnovelA674S0.43
COADchr935717708Missense_Mutationrs774077967R692W0.47
COADchr935698845Missense_Mutationrs763897212A2363V0.13
COADchr935711000Missense_MutationNAR1368W0.36
COADchr935711724Missense_MutationNAN1250K0.39
COADchr935698422In_Frame_InsnovelL2424_I2425insETY0.09
COADchr935705813Silentrs748787321F1850F0.21
COADchr935706352Silentrs535930797A1735A0.23
DLBCchr935720847Missense_MutationNAL391F0.15
DLBCchr935704402Missense_Mutationrs149639715D1993N0.11
DLBCchr935724046Missense_MutationnovelV230I0.11
ESCAchr9356974683'UTRnovel0.25
ESCAchr935700021Missense_Mutationrs750965317R2241W0.33
ESCAchr935700262Missense_Mutationrs761387809R2197C0.12
ESCAchr935703900Missense_MutationnovelV2078M0.32
ESCAchr935713965SilentnovelL1079L0.31
ESCAchr935700038Missense_Mutationrs752190315R2235Q0.56
ESCAchr935707167Silentrs554877602L1620L0.14
GBMchr935717701Missense_MutationnovelE694G0.14
GBMchr935724076Nonsense_MutationnovelR220*0.32
GBMchr935725591Missense_Mutationrs192509639R35Q0.06
GBMchr935699133Missense_MutationnovelD2300Y0.23
GBMchr935710804Missense_MutationnovelN1399T0.04
GBMchr935698160Missense_Mutationrs762166245A2462T0.48
GBMchr935698330Missense_MutationnovelR2455Q0.12
GBMchr935699392Missense_Mutationrs780974070V2280I0.16
GBMchr935699987Missense_MutationnovelD2252G0.32
GBMchr935710675Silentrs774522280G1404G0.15
GBMchr935719257Silentrs780691721T571T0.12
GBMchr935717670SilentnovelA704A0.05
GBMchr935697840Missense_MutationNAR2526Q0.04
GBMchr935714673Missense_MutationnovelQ962H0.18
GBMchr935712976SilentnovelA1140A0.43
GBMchr935714077Missense_MutationnovelQ1042R0.11
GBMchr935715074Frame_Shift_InsnovelV914Gfs*650.07
GBMchr935723919Intronnovel0.1
GBMchr935712093Missense_Mutationrs765433665R1198H0.18
GBMchr935714571Splice_Regionrs7630487490.12
GBMchr935715149SilentNAQ888Q0.11
GBMchr935722875Missense_MutationNAR277C0.23
GBMchr935703625Missense_MutationnovelD2137H0.05
GBMchr935711326SilentnovelL1316L0.33
HNSCchr935712952Missense_MutationnovelQ1148H0.23
HNSCchr935706788Missense_Mutationrs768245253R1690C0.27
HNSCchr935720088Missense_Mutationrs144393265Q472R0.28
HNSCchr935707193Missense_MutationnovelG1612R0.18
HNSCchr935716454Missense_MutationnovelR854L0.2
HNSCchr935724891Silentrs748628195T99T0.09
HNSCchr935698092Missense_MutationnovelE2484D0.16
HNSCchr935724575Missense_MutationNAE170Q0.58
HNSCchr935711045Missense_MutationnovelC1353G0.53
HNSCchr935707798Missense_MutationnovelK1522M0.34
HNSCchr935706342Missense_MutationnovelE1739Q0.19
HNSCchr935715168Missense_MutationnovelD882A0.29
HNSCchr935716475Missense_Mutationrs755083449E847G0.04
HNSCchr935720908Missense_MutationnovelF370L0.08
HNSCchr935714270Missense_Mutationrs764011686A1030V0.34
HNSCchr935720838Missense_MutationnovelG394S0.11
HNSCchr935704670Missense_MutationnovelK1960M0.22
HNSCchr935717219SilentnovelA795A0.3
HNSCchr935715169Missense_MutationnovelD882N0.1
HNSCchr935717421Missense_MutationnovelS728I0.73
HNSCchr935720455Missense_MutationnovelE421Q0.08
HNSCchr935707820Missense_MutationnovelR1515G0.1
HNSCchr9357257135'UTRnovel0.27
HNSCchr935720094Missense_Mutationrs148182997P470L0.44
KIRCchr935718907Missense_MutationNAR634S0.17
KIRCchr935714324Missense_MutationNAQ1012P0.65
KIRCchr935698345Missense_MutationNAS2450L0.14
KIRPchr935706218Missense_MutationNAK1780R0.23
KIRPchr935698172Missense_MutationNAA2458P0.16
KIRPchr935697813Nonsense_MutationnovelS2535*0.54
KIRPchr935711019Silentrs780092147K1361K0.25
KIRPchr935699408Missense_MutationNAK2274N0.31
KIRPchr935714848Missense_MutationnovelA928D0.29
KIRPchr935699094Frame_Shift_DelnovelG2311Qfs*110.23
KIRPchr935711279Missense_MutationNAK1332M0.35
KIRPchr935698342Missense_MutationNAE2451A0.09
LAMLchr935719749SilentnovelG523G0.19
LAMLchr935717320Nonsense_MutationnovelQ762*0.07
LAMLchr935706033Missense_MutationnovelL1814V0.13
LGGchr935706487Missense_Mutationrs202143177N1718S0.2
LGGchr935717310Missense_Mutationrs752009662R765Q0.21
LGGchr935714766Missense_MutationNAS955R0.05
LGGchr935720839Silentrs749192861A393A0.2
LIHCchr935705591Missense_Mutationrs779743307S1898L0.46
LIHCchr935697840Missense_MutationNAR2526Q0.35
LIHCchr935707198Missense_MutationnovelA1610D0.2
LIHCchr935724959Missense_MutationNAD77Y0.34
LIHCchr935703659SilentNAV2125V0.41
LIHCchr935707457Missense_MutationnovelR1555L0.49
LIHCchr935717325Missense_MutationnovelD760V0.49
LIHCchr935703776Missense_MutationnovelK2119R0.31
LUADchr935711081Missense_MutationnovelA1341S0.5
LUADchr935720895Missense_MutationNAD375H0.29
LUADchr935722172Missense_MutationNAV299L0.34
LUADchr935712919SilentNAL1159L0.44
LUADchr935714252Missense_MutationnovelT1036M0.27
LUADchr935718874Missense_MutationNAG645C0.37
LUADchr935714847SilentnovelA928A0.04
LUADchr935711748Missense_MutationnovelL1242F0.12
LUADchr935705821In_Frame_DelnovelE1847del0.23
LUADchr935707220Missense_MutationNAA1603T0.51
LUADchr935712047SilentnovelL1213L0.15
LUADchr935710598Missense_MutationNAS1430L0.33
LUADchr935706064Missense_MutationNAM1803I0.13
LUADchr935699428Nonsense_MutationNAQ2268*0.09
LUADchr935700305SilentNAI2182I0.22
LUADchr935700307Missense_MutationNAI2182F0.21
LUADchr935719535SilentnovelV557V0.44
LUADchr935707128SilentNAL1633L0.76
LUADchr935714080Missense_MutationnovelA1041V0.26
LUADchr935707114Frame_Shift_InsnovelR1638Pfs*250.1
LUADchr935704726SilentNAP1941P0.12
LUSCchr935720149Missense_MutationNAI452V0.25
LUSCchr935706852SilentnovelL1668L0.12
LUSCchr935698065SilentnovelK2493K0.21
LUSCchr935699977SilentnovelL2255L0.43
LUSCchr935717269Missense_MutationnovelN779H0.37
LUSCchr935706816Silentrs762759883L1680L0.2
LUSCchr935722864Silentrs777906241F280F0.59
LUSCchr935699043Missense_MutationNAA2330P0.39
LUSCchr935720480Missense_MutationNAE412D0.4
LUSCchr935699407Missense_Mutationrs773118269R2275C0.15
LUSCchr935708462Missense_MutationNAS1450F0.65
LUSCchr935703859SilentnovelL2091L0.31
LUSCchr9356976643'UTRnovel0.33
LUSCchr9356976653'UTRnovel0.31
LUSCchr935720191Missense_MutationnovelR438W0.05
LUSCchr935719215SilentnovelT585T0.39
LUSCchr935707123Missense_MutationnovelG1635A0.57
LUSCchr935705580Missense_Mutationrs770507067P1902S0.11
LUSCchr9356977203'UTRnovel0.15
LUSCchr935712076Missense_MutationNAP1204S0.19
LUSCchr9356977173'UTRnovel0.56
LUSCchr935710638Missense_MutationNAG1417R0.14
LUSCchr935706775Missense_MutationNAS1694F0.25
MESOchr935717159SilentnovelS815S0.35
MESOchr935707829Missense_MutationnovelA1512P0.08
MESOchr935714264Missense_Mutationrs373243370A1032G0.26
OVchr935699453Missense_MutationNAQ2259H0.16
OVchr935724627SilentNAL152L0.26
OVchr935705962Splice_RegionnovelQ1837Q0.48
OVchr935698044Missense_MutationnovelQ2500H0.06
OVchr935711644Frame_Shift_InsnovelD1277Afs*540.12
OVchr935707731Missense_MutationnovelK1544N0.1
OVchr935703780Missense_MutationnovelA2118P0.08
OVchr935699406Missense_Mutationrs73438721R2275H0.36
OVchr935699389Missense_MutationnovelT2281S0.07
OVchr935712017SilentnovelL1223L0.1
OVchr935698465Missense_MutationnovelA2410V0.09
OVchr935711351Missense_MutationnovelI1308T0.14
PAADchr935699044SilentnovelR2329R0.1
PAADchr935699413Missense_MutationnovelS2273A0.04
PAADchr935705573Missense_Mutationrs373819052A1904V0.2
PAADchr935707250Missense_Mutationrs267602229R1593W0.13
PAADchr935708474Missense_MutationnovelL1446P0.15
PAADchr935714816Missense_MutationnovelA939P0.14
PAADchr935715100Missense_MutationnovelA905T0.18
PAADchr935715142Missense_Mutationrs770307539R891W0.16
PAADchr935725688Missense_MutationnovelA3T0.15
PAADchr935700283Missense_Mutationrs758160563V2190I0.04
PCPGchr935700008Missense_Mutationrs368513332N2245S0.39
PRADchr9356977683'UTRnovel0.35
PRADchr935711268Missense_MutationNAA1336S0.1
PRADchr935700344SilentnovelT2169T0.49
PRADchr935703885Missense_Mutationrs761961290A2083T0.11
PRADchr935707459Silentrs781565789N1554N0.42
PRADchr935716545Nonsense_MutationnovelR824*0.41
PRADchr935725565Missense_Mutationrs543841478P44S0.34
READchr935716495SilentNAI840I0.24
READchr935706490Missense_MutationnovelA1717V0.31
READchr935698640Missense_MutationnovelW2389G0.58
READchr935699393SilentNAS2279S0.32
READchr935714270Missense_Mutationrs764011686A1030V0.36
READchr935717174Missense_MutationnovelE810D0.42
READchr935711693Missense_MutationnovelR1261W0.16
READchr935717157Missense_MutationnovelM816T0.36
SARCchr935704733Missense_MutationnovelC1939Y0.09
SARCchr935705600Missense_Mutationrs567336438R1895H0.36
SKCMchr935706004Silentrs149087654V1823V0.37
SKCMchr935705817Missense_MutationNAS1849F0.53
SKCMchr935714012SilentNAL1064L0.36
SKCMchr935711306Missense_MutationNAS1323F0.26
SKCMchr935704689Missense_MutationNAA1954S0.48
SKCMchr935707820Missense_Mutationrs758176386R1515C0.06
SKCMchr935710669SilentnovelA1406A0.38
SKCMchr935700226Missense_MutationnovelR2209C0.11
SKCMchr935700227SilentnovelS2208S0.11
SKCMchr935712050SilentnovelA1212A0.33
SKCMchr935710881SilentNAV1373V0.29
SKCMchr935700366Missense_MutationNAS2162F0.43
SKCMchr935699388Missense_MutationNAT2281I0.31
SKCMchr935713968SilentNAP1078P0.31
SKCMchr935714782Missense_MutationNAP950L0.29
SKCMchr9356977793'UTRnovel0.38
SKCMchr935724064Frame_Shift_InsnovelL224Tfs*100.19
SKCMchr935724066Frame_Shift_InsnovelI223Nfs*210.19
SKCMchr935705813Silentrs748787321F1850F0.39
SKCMchr935707808Missense_MutationNAP1519S0.23
SKCMchr935711669Nonsense_MutationNAR1269*0.29
SKCMchr935699394Missense_MutationNAS2279F0.71
SKCMchr935717708Missense_Mutationrs774077967R692W0.62
SKCMchr935722161SilentnovelA302A0.93
SKCMchr935706308Missense_MutationNAS1750F0.8
SKCMchr935710654SilentNAS1411S0.94
SKCMchr935719226Missense_MutationNAS582P0.66
SKCMchr935703633Missense_MutationNAA2134V0.12
SKCMchr935719782SilentNAT512T0.42
SKCMchr935714782Missense_MutationNAP950L0.24
SKCMchr935700342Missense_MutationNAS2170F0.15
SKCMchr9356976453'UTRnovel0.78
SKCMchr935724287Missense_MutationnovelE187K0.26
STADchr935719100Missense_Mutationrs373629805R624C0.16
STADchr935722159Missense_Mutationrs773595542R303H0.35
STADchr935724277Missense_Mutationrs769874189T190M0.37
STADchr935704047Missense_Mutationrs757869013A2059T0.18
STADchr935713201Missense_MutationnovelY1116F0.13
STADchr935713996Missense_MutationNAA1069V0.1
STADchr935714792Missense_Mutationrs570598486G947S0.61
STADchr935705805Missense_MutationnovelY1853C0.39
STADchr935713242Silentrs778146857I1102I0.29
STADchr935720040Missense_MutationNAL488P0.28
STADchr935704435Missense_MutationnovelA1982T0.44
STADchr935711735Missense_MutationnovelA1247T0.41
STADchr935721735SilentnovelR339R0.05
STADchr935725617Silentrs755651034Y26Y0.36
STADchr935717229Missense_MutationNAA792V0.11
STADchr935711381Missense_Mutationrs189605894R1298Q0.29
STADchr935711595Splice_RegionNAP1293P0.32
STADchr935711656Missense_Mutationrs747462166R1273Q0.28
STADchr935725616Missense_MutationnovelD27N0.09
STADchr935714860Missense_MutationNAA924V0.31
STADchr935720503Frame_Shift_DelNAS405Afs*840.28
STADchr935716446Missense_MutationNAL857V0.11
STADchr935706865Missense_Mutationrs766069516A1664V0.28
STADchr935697861Missense_MutationNAR2519Q0.39
STADchr935700203SilentnovelL2216L0.14
STADchr935715066Missense_Mutationrs760405428R916H0.15
STADchr935707796Missense_MutationNAR1523C0.14
STADchr935719205Missense_Mutationrs759490877R589C0.21
STADchr935719123Missense_Mutationrs756483237A616V0.27
STADchr935717292Missense_MutationnovelA771V0.24
STADchr935706105Missense_Mutationrs754790750A1790T0.14
STADchr935707153Missense_MutationNAR1625Q0.18
STADchr935723940Intronnovel0.2
STADchr935708387Missense_MutationNAQ1475R0.35
THYMchr935724313Missense_Mutationrs767796509R178Q0.2
UCECchr935714255Missense_MutationNAR1035Q0.16
UCECchr935698621Missense_MutationNAS2395Y0.3
UCECchr935707753Missense_MutationNAA1537V0.35
UCECchr935711753Missense_Mutationrs770655381R1241W0.31
UCECchr935724593Missense_MutationNAK164E0.29
UCECchr935717314Missense_MutationnovelL764V0.22
UCECchr935718872SilentnovelG645G0.4
UCECchr935706501SilentNAI1713I0.2
UCECchr935724070Missense_MutationNAD222N0.23
UCECchr935706892Missense_MutationnovelA1655D0.29
UCECchr935717199Missense_MutationnovelT802I0.3
UCECchr935710847Missense_MutationnovelN1385D0.13
UCECchr935713011Missense_Mutationrs773838436R1129W0.53
UCECchr935720463Missense_MutationnovelT418N0.34
UCECchr935705814Missense_MutationnovelF1850S0.39
UCECchr935711740Missense_MutationnovelA1245D0.46
UCECchr935711623Missense_MutationnovelA1284D0.18
UCECchr935724960Splice_SitenovelX77_splice0.44
UCECchr935697889Missense_MutationnovelR2510W0.51
UCECchr935704396Missense_MutationNAT1995A0.2
UCECchr935708407SilentNAA1468A0.26
UCECchr935719100Missense_Mutationrs373629805R624C0.27
UCECchr935720096SilentNAP469P0.25
UCECchr935716424Missense_MutationNAA864V0.16
UCECchr935704815Missense_MutationNAI1912L0.47
UCECchr935698818Missense_MutationnovelA2372V0.38
UCECchr9356977183'UTRnovel0.07
UCECchr935698489Missense_Mutationrs200286479A2402V0.16
UCECchr935706004Silentrs149087654V1823V0.09
UCECchr935723789Intronnovel0.15
UCECchr935711788Missense_MutationnovelP1229H0.14
UCECchr935721804Splice_SitenovelX317_splice0.16
UCECchr935723944Splice_Regionnovel0.21
UCECchr935699449Missense_MutationNAP2261S0.38
UCECchr935704064Missense_Mutationrs747900794A2053V0.52
UCECchr935714590Missense_MutationNAS990N0.45
UCECchr935722178Missense_Mutationrs145146362R297C0.26
UCECchr935711019Missense_MutationnovelK1361N0.11
UCECchr935707833SilentnovelR1510R0.09
UCECchr935711328Missense_MutationnovelL1316I0.5
UCECchr935719100Missense_Mutationrs373629805R624C0.19
UCECchr935722870Missense_MutationnovelK278N0.4
UCECchr935704146SilentnovelL2026L0.35
UCECchr935697841Missense_MutationnovelR2526W0.38
UCECchr935700000SilentnovelL2248L0.2
UCECchr935707185Silentrs748947958I1614I0.33
UCECchr935707458Missense_Mutationrs796217856R1555C0.3
UCECchr935714002Missense_MutationnovelV1067A0.28
UCECchr935724629SilentnovelL152L0.22
UCECchr935697902Missense_MutationNAQ2505H0.18
UCECchr935707144Frame_Shift_DelNAP1628Rfs*200.44
UCECchr935704457Silentrs140702228G1974G0.25
UCECchr935704363Missense_MutationnovelR2006C0.33
UCECchr935707796Missense_MutationNAR1523C0.43
UCECchr935711302Silentrs774589019T1324T0.48
UCECchr935724277Missense_Mutationrs769874189T190M0.45
UCECchr935700352Missense_MutationnovelA2167T0.27
UCECchr935704744Silentrs370400484G1935G0.42
UCECchr935707192Missense_MutationnovelG1612E0.52
UCECchr935721670Missense_MutationNAA361V0.44
UCECchr935697805Nonsense_MutationNAR2538*0.36
UCECchr935706503Missense_MutationNAI1713V0.52
UCECchr935704007Frame_Shift_InsnovelE2072Afs*110.05
UCECchr935697902Missense_MutationNAQ2505H0.17
UCECchr935718870Missense_MutationnovelQ646L0.06
UCECchr935704407Missense_MutationnovelD1991G0.1
UCECchr935698489Missense_Mutationrs200286479A2402V0.31
UCECchr935721670Missense_MutationNAA361V0.49
UCECchr935724675Missense_MutationnovelE136D0.3
UCECchr935706491Missense_Mutationrs544636956A1717T0.31
UCECchr9356974473'UTRnovel0.5
UCECchr935707224SilentnovelI1601I0.31
UCECchr935711328Missense_MutationNAL1316F0.11
UCECchr935704479Missense_MutationnovelA1967V0.09
UCECchr935707834Missense_Mutationrs756002749R1510H0.4
UCECchr935714573Splice_SitenovelX995_splice0.27
UCECchr935722875Missense_MutationNAR277C0.31
UCECchr935719770SilentnovelF516F0.56
UCECchr935700292Missense_MutationNAA2187T0.48
UCECchr935704363Missense_MutationnovelR2006C0.4
UCECchr935707796Missense_MutationNAR1523C0.37
UCECchr935725648Missense_MutationnovelT16M0.26
UCECchr935698845Missense_Mutationrs763897212A2363V0.31
UCECchr935724277Missense_Mutationrs769874189T190M0.47
UCECchr935703886Silentrs11541906N2082N0.34
UCECchr935723846Intronnovel0.12
UCECchr935720490Missense_MutationnovelF409C0.06
UCECchr935698386SilentnovelA2436A0.19
UCECchr935698899Missense_Mutationrs777100987I2345T0.29
UCECchr935703839Missense_Mutationrs149573730T2098M0.29
UCECchr935710842SilentnovelD1386D0.24
UCECchr935713962SilentnovelP1080P0.43
UCECchr935717366Silentrs776831566A746A0.24
UCECchr935725633Missense_Mutationrs764312097P21L0.48
UCECchr935712971Missense_Mutationrs778948183T1142M0.21
UCECchr935697817Missense_MutationnovelP2534S0.5
UCECchr935722172Missense_Mutationrs749761240V299M0.43
UCECchr935704696SilentnovelI1951I0.07
UCECchr935704697In_Frame_InsnovelL1950_I1951insT0.07
UCECchr935707421Missense_MutationnovelE1567G0.28
UCECchr935700039Nonsense_MutationNAR2235*0.08
UCECchr935724726Splice_SitenovelX120_splice0.36
UCECchr935720094Frame_Shift_DelnovelP470Lfs*190.23
UCECchr935706461SilentNAL1727L0.07
UCECchr935700373Missense_MutationNAF2160V0.5
UCECchr935704159Missense_MutationnovelK2021N0.29
UCECchr935707084Missense_MutationnovelI1648S0.43
UCECchr935707406Missense_MutationnovelL1572R0.31
UCECchr935704695Frame_Shift_InsnovelE1952Pfs*730.04
UCECchr935704697Frame_Shift_InsnovelI1951Sfs*90.01
UCECchr935700359SilentNAE2164E0.53
UCECchr935704165Silentrs772238127I2019I0.4
UCECchr935707193Missense_MutationnovelG1612R0.3
UCECchr935714596Missense_MutationnovelA988D0.38
UCECchr935717178Missense_MutationnovelT809N0.49
UCECchr935721764SilentnovelL330L0.16
UCECchr935724892Missense_MutationNAT99M0.44
UCECchr935720438Frame_Shift_DelnovelK428Sfs*610.35
UCECchr935697910Missense_Mutationrs148513341A2503T0.26
UCECchr935722876SilentnovelE276E0.08
UCECchr935724892Missense_MutationNAT99M0.31
UCECchr935707487Missense_MutationnovelA1545V0.44
UCECchr935698845Missense_Mutationrs763897212A2363V0.32
UCECchr935704154Missense_MutationnovelA2023V0.39
UCECchr935706865Missense_Mutationrs766069516A1664V0.35
UCECchr935712890Missense_Mutationrs552100458A1169V0.34
UCECchr935714046SilentnovelS1052S0.43
UCECchr935717159SilentnovelS815S0.29
UCECchr935725317Silentrs756421597S45S0.36
UCECchr935704154Missense_MutationnovelA2023V0.28
UCECchr935706358Missense_MutationnovelQ1733H0.27
UCECchr935718907Missense_Mutationrs776442599R634C0.39
UCECchr935724724Missense_MutationnovelG120D0.35
UCECchr935725301Missense_MutationnovelL51M0.13

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
HNSCAMP0.22996.4212e-14
LAMLDEL0.00520.24147
LUSCAMP0.23151.2335e-10
PAADAMP0.09241.193e-05
STADAMP0.15650.00082114
TGCTDEL0.32677.3329e-05
THCADEL0.02610.24038
THYMDEL0.01630.022012
UCSDEL0.50.089783

Survival Analysis
CancerP-value Q-value
KIRC0.00011

Kaplan-Meier Survival Analysis

SARC0.048

Kaplan-Meier Survival Analysis

MESO0.017

Kaplan-Meier Survival Analysis

ACC0.00018

Kaplan-Meier Survival Analysis

UCS0.043

Kaplan-Meier Survival Analysis

LUSC0.046

Kaplan-Meier Survival Analysis

ESCA0.036

Kaplan-Meier Survival Analysis

BLCA0.016

Kaplan-Meier Survival Analysis

CESC0.033

Kaplan-Meier Survival Analysis

LAML0.00023

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000137076 (Gene tree)
Gene ID
7094
Gene Symbol
TLN1
Alias
ILWEQ|TLN
Full Name
talin 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
35,448 bases
Position
chr9:35,696,948-35,732,395
Accession
11845
RBP type
non-canonical RBP
Summary
This gene encodes a cytoskeletal protein that is concentrated in areas of cell-substratum and cell-cell contacts. The encoded protein plays a significant role in the assembly of actin filaments and in spreading and migration of various cell types, including fibroblasts and osteoclasts. It codistributes with integrins in the cell surface membrane in order to assist in the attachment of adherent cells to extracellular matrices and of lymphocytes to other cells. The N-terminus of this protein contains elements for localization to cell-extracellular matrix junctions. The C-terminus contains binding sites for proteins such as beta-1-integrin, actin, and vinculin. [provided by RefSeq, Feb 2009]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20728432Vinculin activates inside-out signaling of integrin αIIbβ3 in Chinese hamster ovary cells.Biochem Biophys Res Commun2010 Sep 24Ohmori Tdoi: 10.1016/j.bbrc.2010.08.056
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000466916TLN1-205446--- (aa)--
ENST00000486788TLN1-206551--- (aa)--
ENST00000314888TLN1-2018823-ENSP000003160292541 (aa)-Q9Y490
ENST00000465002TLN1-204543--- (aa)--
ENST00000378192TLN1-2021693--- (aa)--
ENST00000489255TLN1-207798--- (aa)--
ENST00000464379TLN1-203814--- (aa)--
ENST00000495712TLN1-208370--- (aa)--
Gene Model
Click here to download ENSG00000137076's gene model file
Pathways
Pathway IDPathway NameSource
hsa04015Rap1 signaling pathwayKEGG
hsa04510Focal adhesionKEGG
hsa04611Platelet activationKEGG
hsa05166Human T-cell leukemia virus 1 infectionKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000137076Asthma8E-623967269
ENSG00000137076Immunoglobulin E8E-623967269
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000137076rs4879926935700840?IgE levels in asthmatics23967269EFO_0004579|EFO_0000270
ENSG00000137076rs2737273935716069CPlatelet distribution width27863252[0.017-0.032] unit increase0.02451837EFO_0007984
ENSG00000137076rs7873822935726824?Heel bone mineral density30048462[0.0099-0.0187] unit increase0.0143036EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000137076's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000137076TLN110098.741ENSMUSG00000028465Tln199100.000Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001726ruffle-ISSComponent
GO:0001786phosphatidylserine binding-IEAFunction
GO:0002576platelet degranulation-TASProcess
GO:0005178integrin binding12473654.IPIFunction
GO:0005200structural constituent of cytoskeleton10610730.NASFunction
GO:0005515protein binding11279249.16273093.16546176.18342854.19608030.IPIFunction
GO:0005576extracellular region-TASComponent
GO:0005829cytosol-TASComponent
GO:0005856cytoskeleton-IEAComponent
GO:0005925focal adhesion21423176.HDAComponent
GO:0005925focal adhesion-ISSComponent
GO:0005925focal adhesion10610730.NASComponent
GO:0006936muscle contraction-TASProcess
GO:0007016cytoskeletal anchoring at plasma membrane10610730.NASProcess
GO:0007043cell-cell junction assembly15494027.TASProcess
GO:0007044cell-substrate junction assembly-IEAProcess
GO:0007229integrin-mediated signaling pathway-IEAProcess
GO:0009986cell surface-IEAComponent
GO:0016032viral process-IEAProcess
GO:0017166vinculin binding15070891.IPIFunction
GO:0030274LIM domain binding10320340.IPIFunction
GO:0030866cortical actin cytoskeleton organization-IEAProcess
GO:0032587ruffle membrane-IEAComponent
GO:0033622integrin activation-IEAProcess
GO:0035091phosphatidylinositol binding-IEAFunction
GO:0036498IRE1-mediated unfolded protein response-TASProcess
GO:0045296cadherin binding25468996.HDAFunction
GO:0051015actin filament binding-IEAFunction
GO:0070062extracellular exosome19056867.20458337.21362503.23533145.HDAComponent
GO:0070527platelet aggregation23382103.HMPProcess
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