EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24887265Chromatin CKAP2, a new proliferation marker, as independent prognostic indicator in breast cancer.PLoS One2014 Jun 2Kim HSdoi: 10.1371/journal.pone.0098160
28933561CKAP2 Promotes Ovarian Cancer Proliferation and Tumorigenesis Through the FAK-ERK Pathway.DNA Cell Biol2017 NovZhang Mdoi: 10.1089/dna.2017.3876

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1352473996Missense_MutationnovelP573A0.2
BLCAchr1352461561SilentNAT246T0.27
BLCAchr1352462558Missense_MutationNAL433F0.07
BLCAchr1352462406Missense_MutationnovelK383E0.21
BLCAchr13524751683'UTRnovel0.84
BLCAchr1352456542SilentnovelL30L0.48
BLCAchr1352461887In_Frame_InsnovelS355delinsRVLFLIIP0.1
BLCAchr13524554995'UTRnovel0.56
BLCAchr1352465551Intronnovel0.17
BRCAchr1352473937Missense_MutationNAL553R0.44
BRCAchr1352461461Missense_MutationNAP213H0.14
BRCAchr1352461725Missense_MutationnovelK301R0.28
BRCAchr1352468314Missense_MutationNAL506V0.56
BRCAchr1352461055Splice_Regionnovel0.29
BRCAchr1352475003Missense_MutationNAL638F0.6
BRCAchr1352465376Missense_MutationnovelW464R0.04
CESCchr1352474026Missense_MutationnovelE583K0.09
CESCchr13524752593'UTRnovel0.2
CESCchr1352456552Missense_MutationNAL34V0.16
CESCchr1352473894Missense_MutationnovelG539C0.12
CESCchr1352461759Missense_MutationNAK312N0.38
CHOLchr1352461305Missense_MutationnovelT161I0.09
COADchr1352461623In_Frame_DelNAT267_Q270delinsK0.12
COADchr1352474899Frame_Shift_Delrs752250702K606Rfs*140.44
COADchr1352462448Missense_MutationNAG397R0.1
COADchr1352465472Splice_RegionNA0.3
COADchr1352462405Frame_Shift_DelNAR384Gfs*60.18
COADchr1352461702Frame_Shift_DelNAT295Qfs*140.12
COADchr1352461734Missense_MutationNAS304Y0.14
COADchr1352473915Missense_MutationNAK546Q0.23
COADchr13524555385'UTRnovel0.26
COADchr1352474899Frame_Shift_Delrs752250702K606Rfs*140.28
COADchr1352474011Frame_Shift_DelnovelT579Pfs*110.07
COADchr13524555385'UTRnovel0.12
COADchr1352474899Frame_Shift_Delrs752250702K606Rfs*140.38
COADchr1352475122Missense_MutationNAY678C0.28
COADchr1352474907SilentNAK606K0.27
COADchr1352474976SilentNAR629R0.14
COADchr1352461197Missense_MutationNAN125I0.11
COADchr1352474030Missense_Mutationrs745449940T584M0.1
COADchr1352456589Missense_MutationNAE46G0.31
COADchr1352468301Silentrs766203069T501T0.26
COADchr1352473848SilentNAS523S0.22
GBMchr1352461703Missense_MutationnovelK294Q0.33
GBMchr1352474975Missense_Mutationrs370416292R629Q0.26
GBMchr1352461339Missense_MutationnovelK172N0.41
GBMchr1352461759Missense_MutationnovelK312N0.12
GBMchr13524555335'UTRrs7674166260.74
GBMchr1352460965Splice_SitenovelX75_splice0.15
HNSCchr13524753483'UTRnovel0.38
HNSCchr1352461919Nonsense_MutationnovelE366*0.36
HNSCchr1352461616Missense_Mutationrs545281527R265W0.44
HNSCchr1352474029Missense_MutationnovelT584A0.22
HNSCchr1352468298SilentnovelH500H0.24
HNSCchr1352461775Missense_Mutationrs752317658I318V0.13
KIRCchr1352461663SilentNAT280T0.53
KIRPchr1352468291Missense_MutationNAM498K0.09
LAMLchr1352461773Missense_MutationnovelS317F0.07
LGGchr1352461151Missense_MutationnovelT110A0.04
LGGchr1352465511Intronnovel0.14
LGGchr13524753473'UTRnovel0.18
LIHCchr1352465446Missense_MutationnovelA487G0.28
LIHCchr1352474978Missense_Mutationrs73186408R630H0.54
LUADchr1352465445Missense_MutationNAA487T0.18
LUADchr1352456599Missense_MutationnovelM49I0.27
LUADchr1352462457Missense_MutationNAE400K0.28
LUADchr1352461923Missense_MutationNAR367T0.21
LUADchr13524554665'Flanknovel0.17
LUADchr1352455587Missense_MutationNAQ11K0.15
LUADchr1352462523Nonsense_MutationnovelK422*0.09
LUADchr1352465310Missense_MutationNAD442N0.26
LUADchr1352475055Missense_MutationnovelT656S0.21
LUADchr1352461798Missense_MutationnovelR325S0.25
LUSCchr13524751553'UTRrs7730490410.14
LUSCchr13524751553'UTRnovel0.18
LUSCchr1352475114SilentnovelR675R0.25
LUSCchr1352461326Missense_MutationnovelA168G0.09
OVchr1352474021Missense_MutationNAN581S0.21
PAADchr13524554895'UTRnovel0.19
READchr1352465600Intronnovel0.19
READchr1352462555Missense_MutationNAN432K0.33
SARCchr1352473904Missense_MutationnovelV542A0.25
SKCMchr1352460952Missense_MutationNAV71A0.29
SKCMchr1352474892Splice_Regionnovel0.29
SKCMchr1352474996Missense_MutationNAS636F0.39
SKCMchr1352461531Missense_MutationNAM236I0.2
SKCMchr1352473989Frame_Shift_DelnovelK571Rfs*50.26
SKCMchr1352473881Frame_Shift_DelnovelS534Rfs*90.4
SKCMchr1352465413Missense_MutationNAP476L0.07
SKCMchr1352461359Missense_MutationnovelY179C0.29
SKCMchr1352474996Missense_MutationNAS636F0.17
SKCMchr13524751703'UTRnovel0.21
STADchr1352474899Frame_Shift_Delrs752250702K606Rfs*140.43
STADchr1352475062Missense_MutationNAL658S0.24
STADchr1352468294Missense_Mutationrs750005059R499Q0.21
STADchr1352461726Missense_MutationNAK301N0.34
STADchr13524554955'UTRnovel0.23
STADchr1352474899Frame_Shift_Delrs752250702K606Rfs*140.41
STADchr1352460974Splice_SitenovelX79_splice0.12
STADchr1352461925Frame_Shift_InsnovelS372Kfs*40.12
STADchr1352474978Missense_Mutationrs73186408R630H0.66
STADchr13524751603'UTRnovel0.22
STADchr1352473900Missense_MutationnovelD541H0.06
STADchr1352461548Missense_MutationNAF242S0.18
STADchr1352474899Frame_Shift_Delrs752250702K606Rfs*140.5
THCAchr13524752423'UTRnovel0.08
THCAchr13524752013'UTRnovel0.06
UCECchr1352461618SilentNAR265R0.17
UCECchr1352474974Nonsense_Mutationrs768288248R629*0.32
UCECchr13524751443'UTRnovel0.07
UCECchr1352465516Intronrs7639765690.35
UCECchr1352465515Intronrs3719520710.35
UCECchr1352456537Missense_MutationnovelK29Q0.59
UCECchr1352461207Silentrs763445264P128P0.46
UCECchr1352468301Silentrs766203069T501T0.43
UCECchr1352461195Missense_MutationnovelS124R0.35
UCECchr1352475057Silentrs754490339T656T0.48
UCECchr1352461907Nonsense_MutationnovelE362*0.36
UCECchr1352456538Missense_MutationNAK29T0.42
UCECchr1352462368Missense_Mutationrs757075646R370H0.22
UCECchr1352465360SilentnovelK458K0.1
UCECchr13524753553'UTRnovel0.19
UCECchr13524753563'UTRnovel0.15
UCECchr1352465538Intronnovel0.06
UCECchr1352474968Missense_Mutationrs748867286R627C0.23
UCECchr1352473873Nonsense_MutationnovelE532*0.44
UCECchr1352474898Frame_Shift_Insrs755784201V607Gfs*40.5
UCECchr1352465474Intronnovel0.41
UCECchr13524753783'UTRnovel0.5
UCECchr1352465715Intronnovel0.19
UCECchr1352473962Missense_MutationnovelD561E0.38
UCECchr1352462394Missense_MutationnovelG379R0.38
UCECchr1352462487Missense_MutationnovelM410L0.36
UCECchr1352456569SilentnovelT39T0.33
UCECchr1352473988Frame_Shift_InsnovelD572Rfs*50.46
UCECchr13524555105'UTRnovel0.48
UCECchr1352461446Missense_MutationnovelL208R0.62
UCECchr1352473989Frame_Shift_DelnovelD572Ifs*180.07
UCECchr1352475057Silentrs754490339T656T0.15
UCECchr1352460949Missense_MutationnovelK70T0.36
UCECchr1352465551Intronnovel0.27
UCECchr1352474974Nonsense_Mutationrs768288248R629*0.46
UCECchr1352456524Missense_MutationnovelE24D0.36
UCECchr13524751633'UTRnovel0.41
UCECchr1352461895Missense_Mutationrs750786244A358P0.81
UCECchr1352474030Missense_Mutationrs745449940T584M0.08
UCECchr1352460905Missense_MutationNAD55E0.41
UCECchr1352475113Missense_MutationnovelR675Q0.53
UCECchr1352461559Missense_MutationNAT246A0.13
UCECchr1352456596Missense_MutationnovelE48D0.34
UCECchr1352461635Missense_Mutationrs761550006G271D0.45
UCECchr1352465793Intronnovel0.41

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.3222.1677e-19
COADDEL0.02880.24773
GBMDEL0.39344.92e-12
KIRCDEL0.11550.031318
LGGDEL0.21445.4722e-09
MESODEL0.40230.0010209
THCADEL0.03410.011063

Survival Analysis
CancerP-value Q-value
THYM0.01

Kaplan-Meier Survival Analysis

STAD0.022

Kaplan-Meier Survival Analysis

SARC0.014

Kaplan-Meier Survival Analysis

MESO0.0013

Kaplan-Meier Survival Analysis

ACC0.00013

Kaplan-Meier Survival Analysis

HNSC0.018

Kaplan-Meier Survival Analysis

PRAD0.0026

Kaplan-Meier Survival Analysis

KIRP0.00051

Kaplan-Meier Survival Analysis

CESC0.008

Kaplan-Meier Survival Analysis

KICH0.013

Kaplan-Meier Survival Analysis

UCEC0.016

Kaplan-Meier Survival Analysis

GBM0.027

Kaplan-Meier Survival Analysis

LIHC0.00014

Kaplan-Meier Survival Analysis

LGG0.00049

Kaplan-Meier Survival Analysis

LUAD0.016

Kaplan-Meier Survival Analysis

UVM0.0028

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000136108 (Gene tree)
Gene ID
26586
Gene Symbol
CKAP2
Alias
LB1|FLJ10749|se20-10|TMAP
Full Name
cytoskeleton associated protein 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
21,272 bases
Position
chr13:52,455,360-52,476,631
Accession
1990
RBP type
non-canonical RBP
Summary
This gene encodes a cytoskeleton-associated protein that stabalizes microtubules and plays a role in the regulation of cell division. The encoded protein is itself regulated through phosphorylation at multiple serine and threonine residues. There is a pseudogene of this gene on chromosome 14. Alternative splicing results in multiple transcript variations. [provided by RefSeq, Nov 2013]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000480747CKAP2-206537-ENSP0000041822497 (aa)-C9J7Y4
ENST00000490903CKAP2-2073395XM_005266344ENSP00000417830634 (aa)XP_005266401Q8WWK9
ENST00000459902CKAP2-204798--- (aa)--
ENST00000258607CKAP2-2013375-ENSP00000258607682 (aa)-Q8WWK9
ENST00000468284CKAP2-205579-ENSP0000041843193 (aa)-C9J649
ENST00000378034CKAP2-2021972-ENSP00000367273494 (aa)-Q8WWK9
ENST00000378037CKAP2-2033629-ENSP00000367276683 (aa)-Q8WWK9
Gene Model
Click here to download ENSG00000136108's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000136108's network
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000281mitotic cytokinesis16061649.IGIProcess
GO:0000922spindle pole-IEAComponent
GO:0005813centrosome21399614.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005881cytoplasmic microtubule16061649.IDAComponent
GO:0006915apoptotic process-IEAProcess
GO:0007026negative regulation of microtubule depolymerization-IEAProcess
GO:0015630microtubule cytoskeleton-IDAComponent
GO:0045944positive regulation of transcription by RNA polymerase II16061649.IGIProcess
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