EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1831355203Missense_MutationnovelL1003V0.28
ACCchr1831338390SilentnovelK447K0.42
ACCchr1831354976Missense_MutationnovelI927N0.63
ACCchr1831326941Missense_MutationnovelW51L0.43
BLCAchr1831336552Missense_MutationNAD402N0.2
BLCAchr18313181515'UTRnovel0.36
BLCAchr1831354995Missense_MutationNAM933I0.33
BLCAchr1831346055Missense_MutationnovelG653R0.3
BLCAchr1831346061Missense_MutationNAE655Q0.18
BLCAchr1831338355Missense_MutationnovelD436N0.11
BLCAchr1831355007SilentnovelL937L0.09
BLCAchr1831354613Missense_MutationnovelT806I0.75
BLCAchr1831328238Missense_MutationNAG89A0.18
BLCAchr1831336423Missense_MutationNAH359N0.17
BLCAchr1831346141Missense_MutationNAM681I0.47
BLCAchr1831336547Nonsense_MutationnovelS400*0.32
BLCAchr1831340000SilentnovelL554L0.14
BRCAchr1831354321Missense_MutationnovelD709N0.07
BRCAchr1831354729Missense_MutationNAD845H0.43
BRCAchr1831354537Missense_MutationNAE781K0.18
BRCAchr18313182885'UTRnovel0.1
BRCAchr1831326951Silentrs778383508F54F0.23
CESCchr1831336582Missense_MutationnovelL412M0.08
CESCchr1831331744Silentrs778849751P187P0.47
CESCchr1831334069Missense_MutationnovelR291T0.35
CESCchr1831346106Missense_MutationNAQ670E0.32
CESCchr1831333652Missense_MutationnovelS250P0.31
CESCchr1831354990Missense_Mutationrs370600690G932S0.51
CESCchr1831343634IntronNA0.35
CESCchr1831343993Missense_MutationNAS630L0.18
CESCchr1831334014Splice_Regionrs2011236670.39
CESCchr1831354929SilentnovelI911I0.31
COADchr1831333634Missense_MutationNAG244C0.34
COADchr1831340012Missense_MutationNAF558L0.3
COADchr1831354365Silentrs372254735I723I0.36
COADchr1831343816Intronnovel0.72
COADchr1831354329SilentnovelG711G0.09
COADchr1831330028Missense_MutationNAS170Y0.35
COADchr18313181795'UTRnovel0.35
COADchr1831327000Missense_MutationNAA71T0.22
COADchr1831328229Missense_Mutationrs770916767R86H0.21
COADchr1831343816Intronnovel0.58
COADchr1831336374Missense_MutationnovelM342I0.21
COADchr1831354961Missense_MutationnovelV922A0.24
COADchr1831355173Missense_MutationnovelG993R0.1
COADchr1831354973Missense_MutationNAV926A0.2
COADchr1831329925Missense_MutationNAD136Y0.11
COADchr1831354905SilentNAS903S0.19
COADchr1831330028Missense_MutationNAS170Y0.37
COADchr1831334163Missense_MutationNAM322I0.32
COADchr1831326880Missense_MutationNAD31Y0.35
COADchr1831346137Missense_Mutationrs771756989S680Y0.27
COADchr1831343569In_Frame_InsnovelQ603delinsLVVE0.07
COADchr1831355259SilentnovelH1021H0.11
COADchr1831343816Intronnovel0.14
DLBCchr1831346139Missense_MutationnovelM681V0.17
DLBCchr1831331733Missense_Mutationrs757446872A184T0.1
ESCAchr1831355076Silentrs200560952G960G0.8
ESCAchr1831354644Silentrs772943379S816S0.39
ESCAchr1831343658Intronrs1129589410.33
ESCAchr1831336505Missense_Mutationrs557916314R386H0.08
GBMchr1831343495Missense_Mutationrs369362154R578H0.39
GBMchr1831354701SilentNAV835V0.15
GBMchr1831339796Frame_Shift_InsnovelN488*0.5
GBMchr1831354505Frame_Shift_InsnovelD770Efs*30.08
GBMchr1831355103Silentrs766364666G969G0.42
GBMchr1831328229Missense_Mutationrs770916767R86H0.44
GBMchr1831354989Silentrs147922509S931S0.37
GBMchr1831333628Nonsense_MutationNAR242*0.36
GBMchr18313554103'UTRnovel0.27
HNSCchr1831343469SilentnovelI569I0.18
HNSCchr1831355161Missense_Mutationrs145472309G989S0.07
HNSCchr1831355329Missense_Mutationrs140838956V1045M0.26
HNSCchr1831339936Missense_MutationnovelG533E0.11
HNSCchr1831334185Nonsense_MutationnovelI330Kfs*60.21
HNSCchr1831328324Missense_MutationnovelE118K0.09
HNSCchr1831339886Frame_Shift_DelnovelD516Efs*460.3
HNSCchr1831343491Missense_MutationnovelP577S0.23
HNSCchr1831354382Missense_MutationnovelP729L0.37
HNSCchr1831334172SilentnovelR325R0.45
HNSCchr1831355299Missense_MutationnovelA1035S0.29
HNSCchr1831334127Missense_MutationnovelI310M0.11
KICHchr1831346055Missense_MutationnovelG653R0.59
KIRCchr1831355262SilentNAH1022H0.23
KIRCchr1831354555Nonsense_MutationNAQ787*0.11
KIRCchr1831318340Missense_MutationNAI14V0.39
KIRPchr1831355337Nonsense_MutationnovelY1047*0.42
KIRPchr1831339772SilentnovelT478T0.37
LAMLchr1831354963Missense_MutationnovelT923P0.18
LGGchr1831333685Missense_MutationnovelD261N0.17
LGGchr1831336481Missense_MutationnovelN378S0.15
LGGchr1831339798Missense_MutationnovelG487D0.05
LGGchr1831343964Silentrs548157114N620N0.13
LGGchr1831355149Missense_MutationNAG985C0.29
LGGchr1831354776SilentNAS860S0.09
LGGchr18313182695'UTRnovel0.19
LGGchr1831355262SilentNAH1022H0.24
LGGchr1831331747Missense_MutationNAN188K0.36
LGGchr1831355020Missense_Mutationrs757887746E942K0.08
LIHCchr1831343810Intronnovel0.45
LIHCchr1831354358Missense_Mutationrs773377615Y721C0.38
LUADchr1831331827Missense_MutationnovelT215N0.2
LUADchr1831355153Missense_MutationnovelA986D0.15
LUADchr1831336547Missense_MutationNAS400L0.17
LUADchr1831354845Missense_MutationNAM883I0.19
LUADchr1831328264Missense_MutationnovelG98R0.14
LUADchr1831334182Nonsense_MutationNAG329*0.13
LUADchr1831336364Missense_MutationNAY339C0.7
LUADchr1831339918Missense_MutationnovelV527E0.24
LUADchr1831355216Missense_MutationNAG1007V0.38
LUADchr1831336601Missense_MutationnovelS418L0.23
LUADchr1831338323Missense_MutationnovelM425T0.15
LUADchr1831334202Missense_MutationnovelK335N0.19
LUADchr1831336373Missense_MutationnovelM342K0.61
LUADchr1831343654Intronnovel0.28
LUADchr1831354803SilentnovelV869V0.2
LUADchr1831331782Missense_MutationNAR200I0.25
LUADchr1831343516Missense_MutationNAP585L0.14
LUADchr1831326958Missense_MutationNAA57T0.18
LUADchr1831338451Missense_MutationnovelD468H0.12
LUADchr1831354716SilentnovelS840S0.03
LUADchr1831339824Missense_MutationnovelP496A0.05
LUADchr1831339932Missense_MutationnovelP532T0.37
LUADchr1831326873Splice_SiteNAX29_splice0.6
LUADchr1831333592Missense_MutationNAY230H0.61
LUADchr1831355247SilentNAS1017S0.2
LUADchr1831354568Missense_MutationnovelP791H0.29
LUADchr1831354569Silentrs765897238P791P0.29
LUADchr1831329964Missense_MutationnovelD149Y0.06
LUADchr1831328224SilentNAT84T0.18
LUADchr1831329987SilentnovelV156V0.86
LUADchr18313554193'UTRnovel0.53
LUADchr1831326967Missense_MutationNAE60K0.15
LUADchr1831354563SilentNAT789T0.4
LUADchr1831339771Missense_MutationnovelT478K0.42
LUADchr1831355169SilentNAL991L0.07
LUADchr1831326974Missense_MutationnovelE62V0.32
LUADchr1831354479SilentnovelI761I0.4
LUADchr1831336456Missense_MutationnovelS370T0.29
LUSCchr1831338429Nonsense_MutationNAY460*0.2
LUSCchr1831326897SilentnovelN36N0.23
LUSCchr1831326600Missense_MutationnovelS23N0.2
LUSCchr1831354766Missense_Mutationrs200643856R857Q0.43
LUSCchr1831339978Missense_MutationnovelG547V0.54
LUSCchr1831333611Missense_MutationNAA236D0.17
LUSCchr1831354652Missense_MutationnovelG819V0.15
LUSCchr1831343987Missense_Mutationrs746988678D628G0.26
LUSCchr1831343667Intronnovel0.69
LUSCchr1831354614SilentnovelT806T0.12
LUSCchr1831326941Missense_MutationnovelW51L0.46
LUSCchr1831354473SilentNAA759A0.13
LUSCchr1831354342Missense_MutationnovelD716Y0.41
LUSCchr1831343485Missense_MutationNAG575S0.14
LUSCchr18313553893'UTRnovel0.36
LUSCchr1831343964Silentrs548157114N620N0.46
LUSCchr1831355008Missense_MutationNAS938C0.38
LUSCchr1831354745Missense_MutationnovelS850Y0.64
LUSCchr1831339903Missense_Mutationrs772134381T522S0.14
LUSCchr1831331791Missense_Mutationrs770676155P203L0.42
LUSCchr1831354381Missense_MutationnovelP729T0.23
LUSCchr1831354626SilentnovelS810S0.46
LUSCchr1831354574Missense_MutationnovelV793D0.4
LUSCchr1831334077Missense_MutationNAD294H0.1
LUSCchr1831326615Missense_MutationnovelQ28L0.42
LUSCchr1831343658Intronrs1129589410.16
LUSCchr1831354451Missense_MutationNAG752V0.33
LUSCchr1831339848Missense_MutationnovelT504A0.32
LUSCchr1831328307Missense_MutationnovelT112I0.24
LUSCchr1831343537Missense_MutationNAG592V0.54
OVchr1831339924Missense_MutationnovelS529C0.04
OVchr1831343518Missense_MutationNAV586F0.17
OVchr1831338381Missense_MutationnovelL444F0.07
OVchr1831354643Missense_Mutationrs372724391S816L0.25
OVchr18313553733'UTRnovel0.1
OVchr1831318304Missense_MutationnovelD2H0.06
OVchr1831333672Missense_MutationNAN256K0.38
OVchr1831334066Missense_MutationNAI290N0.39
OVchr1831355153Missense_MutationnovelA986V0.09
PAADchr1831343657IntronNA0.21
PAADchr1831354855Nonsense_MutationnovelR887*0.19
PAADchr1831355092Missense_MutationnovelG966C0.18
PRADchr1831343635Intronnovel0.5
PRADchr1831354990Missense_Mutationrs370600690G932S0.27
READchr1831333594Silentrs781133396Y230Y0.92
READchr1831339969Missense_MutationnovelV544A0.1
READchr1831326880Missense_MutationNAD31Y0.39
READchr1831326951Silentrs778383508F54F0.38
READchr1831334171Missense_MutationNAR325I0.35
READchr1831354605Silentrs747276192F803F0.39
READchr1831326951Silentrs778383508F54F0.35
READchr1831334171Missense_MutationNAR325I0.32
SKCMchr1831354558Missense_MutationNAE788K0.47
SKCMchr1831327006Splice_SiteNAX72_splice0.16
SKCMchr1831338332Missense_MutationNAN428I0.29
SKCMchr1831346056Missense_MutationnovelG653E0.31
SKCMchr1831331787Missense_MutationnovelE202K0.33
SKCMchr1831333694Missense_MutationnovelD264N0.25
SKCMchr1831336514Missense_MutationNAS389L0.3
SKCMchr1831354995Missense_MutationNAM933I0.56
SKCMchr1831338438SilentNAT463T0.19
SKCMchr1831334141Missense_MutationNAG315E0.17
SKCMchr1831354732Missense_MutationnovelT846S0.21
SKCMchr1831354733Missense_MutationnovelT846I0.23
SKCMchr18313182435'UTRnovel0.22
SKCMchr1831346171Missense_MutationNAM691I0.15
SKCMchr18313182675'UTRrs3678692210.76
SKCMchr1831338434Missense_Mutationrs148956893G462E0.1
SKCMchr1831346137Missense_MutationNAS680F0.35
SKCMchr1831334141Missense_MutationNAG315E0.12
SKCMchr1831326951Silentrs778383508F54F0.44
SKCMchr18313181875'UTRnovel0.18
SKCMchr1831336469Missense_MutationNAV374A0.19
SKCMchr18313182435'UTRnovel0.16
SKCMchr1831333712Missense_MutationNAE270K0.39
SKCMchr1831334082SilentNAL295L0.23
SKCMchr1831355302Nonsense_Mutationrs144199555R1036*0.31
SKCMchr18313182335'UTRrs5503434800.22
SKCMchr1831329992Missense_Mutationrs754465552S158L0.37
SKCMchr18313182795'UTRnovel0.33
SKCMchr1831355156Missense_MutationNAG987E0.28
SKCMchr1831329980Missense_Mutationrs760202888P154L0.18
SKCMchr1831334032Nonsense_MutationNAQ279*0.24
SKCMchr1831338399SilentNAK450K0.21
SKCMchr1831354670Missense_MutationNAP825L0.29
SKCMchr1831338326Missense_MutationNAG426E0.64
SKCMchr1831354759Missense_Mutationrs561112685D855N0.51
SKCMchr1831338367Missense_MutationNAG440S0.48
SKCMchr1831355216Missense_MutationNAG1007E0.36
SKCMchr1831334121SilentNAF308F0.24
SKCMchr1831328273Missense_MutationNAV101I0.14
SKCMchr1831355148Missense_MutationnovelM984I0.26
SKCMchr1831318304Missense_MutationnovelD2N0.38
SKCMchr1831354759Missense_Mutationrs561112685D855N0.34
SKCMchr1831354552Missense_Mutationrs267605156P786S0.64
SKCMchr1831331708SilentNAL175L0.42
SKCMchr1831339810Missense_MutationNAR491K0.66
SKCMchr18313554403'UTRnovel0.24
SKCMchr1831343536Missense_MutationNAG592R0.61
SKCMchr1831354564Missense_MutationNAE790K0.25
SKCMchr1831354933Missense_MutationNAH913Y0.57
SKCMchr1831346074Missense_MutationNAG659E0.36
SKCMchr1831354994Missense_MutationNAM933K0.21
SKCMchr1831346161Missense_MutationNAG688D0.23
SKCMchr1831333702SilentNAI266I0.1
SKCMchr1831355309Missense_Mutationrs370813362R1038Q0.08
SKCMchr1831354663Missense_MutationNAP823S0.26
SKCMchr1831354866Silentrs771323370S890S0.71
SKCMchr1831354639Missense_Mutationrs778980591P815S0.07
SKCMchr18313182005'UTRnovel0.36
SKCMchr1831343466Missense_MutationNAM568I0.12
SKCMchr1831354328Missense_MutationNAG711E0.38
SKCMchr1831334141Missense_MutationNAG315E0.52
SKCMchr1831336423Missense_MutationNAH359Y0.23
SKCMchr1831343545Missense_MutationNAH595Y0.36
SKCMchr1831331838Nonsense_Mutationrs145081747R219*0.27
SKCMchr1831355020Missense_Mutationrs757887746E942K0.27
SKCMchr1831354711Missense_Mutationrs181411154E839K0.33
SKCMchr18313182135'UTRnovel0.28
SKCMchr1831346177SilentNAF693F0.31
SKCMchr1831333702SilentNAI266I0.39
SKCMchr1831336356Splice_RegionNAP336P0.32
SKCMchr1831343567Missense_MutationNAP602L0.25
SKCMchr1831329902Missense_MutationNAR128Q0.15
SKCMchr1831354689SilentnovelG831G0.17
SKCMchr1831338455Splice_SiteNAX469_splice0.19
SKCMchr1831346143Missense_MutationNAR682K0.13
SKCMchr1831339942Missense_MutationNAG535E0.52
SKCMchr1831354558Missense_MutationNAE788K0.07
SKCMchr1831354593SilentNAI799I0.31
SKCMchr1831326999Silentrs186238458I70I0.11
SKCMchr1831331838Nonsense_Mutationrs145081747R219*0.34
SKCMchr1831354487Missense_MutationNAG764E0.15
SKCMchr1831355249Missense_MutationNAS1018F0.42
SKCMchr1831354651Missense_MutationnovelG819S0.77
SKCMchr1831354856Missense_Mutationrs368044134R887Q0.9
SKCMchr18313554053'UTRnovel1
SKCMchr1831336492Missense_MutationNAG382S0.44
SKCMchr1831354822Missense_MutationnovelD876N0.48
SKCMchr1831343518Missense_Mutationrs373183283V586I0.09
SKCMchr1831354589Missense_MutationNAP798Q0.08
SKCMchr1831333702SilentNAI266I0.28
SKCMchr1831354663Missense_MutationNAP823S0.44
SKCMchr1831333722Missense_MutationNAS273L0.18
SKCMchr1831334163Missense_MutationNAM322I0.11
SKCMchr1831340016Missense_MutationNAV560I0.28
SKCMchr1831334141Missense_MutationNAG315E0.27
SKCMchr1831343545Missense_MutationNAH595Y0.29
SKCMchr1831354501Missense_Mutationrs371822501P769S0.28
SKCMchr1831354887SilentnovelR897R0.29
SKCMchr1831334141Missense_MutationNAG315E0.23
SKCMchr1831354513Missense_Mutationrs778198305P773S0.09
SKCMchr1831343571SilentnovelQ603Q0.38
SKCMchr1831328321Nonsense_Mutationrs755271644R117*0.2
SKCMchr18313182155'UTRnovel0.29
SKCMchr1831329992Missense_Mutationrs754465552S158L0.15
SKCMchr1831354496Missense_MutationNAS767L0.24
SKCMchr1831346163SilentNAL689L0.79
SKCMchr1831343476Missense_Mutationrs137983671D572N0.52
SKCMchr1831354417Missense_MutationNAE741K0.27
SKCMchr1831334062Missense_Mutationrs377729186E289K0.31
SKCMchr1831354966Missense_MutationNAE924K0.25
SKCMchr18313182675'UTRrs3678692210.12
SKCMchr1831334055Missense_Mutationrs761869585N286K0.29
SKCMchr1831328341Silentrs138672131F123F0.42
SKCMchr1831329992Missense_Mutationrs754465552S158L0.73
SKCMchr1831333621SilentnovelG239G0.87
SKCMchr1831336381SilentnovelL345L0.77
SKCMchr1831355313SilentnovelI1039I0.68
SKCMchr18313554213'UTRnovel0.48
SKCMchr1831334183Missense_MutationNAG329E0.19
STADchr1831334061Silentrs760320030L288L0.23
STADchr1831333628Nonsense_MutationNAR242*0.29
STADchr1831339941Missense_MutationNAG535R0.18
STADchr1831334114Missense_Mutationrs371165240V306A0.35
STADchr1831333594Silentrs781133396Y230Y0.2
STADchr1831346019Missense_MutationNAE641K0.37
STADchr1831354635SilentnovelT813T0.39
STADchr1831338417Silentrs150549762L456L0.14
STADchr1831355214Missense_MutationnovelL1006F0.14
STADchr1831326610SilentnovelR26R0.13
STADchr18313182065'UTRnovel0.67
STADchr1831334091SilentNAE298E0.09
STADchr1831354877Missense_MutationNAV894G0.21
THYMchr1831336503Silentrs768303232F385F0.08
UCECchr1831343816Intronrs5744397120.44
UCECchr1831343816Intronnovel0.35
UCECchr1831339806Missense_Mutationrs750427281D490N0.33
UCECchr1831343833Intronnovel0.36
UCECchr1831354710Silentrs758293574T838T0.12
UCECchr1831346109Nonsense_MutationNAE671*0.26
UCECchr1831354842Silentrs748921617E882E0.28
UCECchr18313181875'UTRnovel0.15
UCECchr1831338320Missense_MutationnovelV424A0.24
UCECchr1831338362Missense_MutationNAR438I0.29
UCECchr1831328249Missense_MutationNAD93N0.45
UCECchr1831354365Silentrs372254735I723I0.42
UCECchr1831343816Intronnovel0.56
UCECchr1831343739Intronnovel0.47
UCECchr18313554403'UTRnovel0.41
UCECchr1831334137Nonsense_MutationnovelE314*0.29
UCECchr1831333596Missense_Mutationrs201719724G231D0.37
UCECchr1831354705Missense_Mutationrs757641298V837M0.4
UCECchr1831354961Missense_MutationnovelV922A0.47
UCECchr1831330000Missense_MutationnovelT161P0.17
UCECchr1831339756Missense_MutationnovelR473I0.1
UCECchr1831354605Silentrs747276192F803F0.16
UCECchr1831346121Missense_MutationnovelT675A0.44
UCECchr1831331821Missense_MutationnovelR213I0.07
UCECchr1831354437Missense_MutationNAF747L0.08
UCECchr1831328324Nonsense_MutationNAE118*0.2
UCECchr1831354901Missense_MutationnovelS902I0.09
UCECchr1831339802SilentNAN488N0.06
UCECchr1831328205Missense_MutationNAA78D0.12
UCECchr1831336423Missense_MutationNAH359Y0.14
UCECchr1831346099Missense_MutationNAE667D0.11
UCECchr1831328206SilentnovelA78A0.1
UCECchr1831333632Missense_MutationnovelD243A0.16
UCECchr1831334028Missense_MutationnovelE277D0.2
UCECchr1831343971Missense_MutationnovelI623L0.43
UCECchr1831343944Missense_Mutationrs762460837P614S0.41
UCECchr1831330018Nonsense_MutationnovelE167*0.26
UCECchr1831343651Intronnovel0.53
UCECchr1831346128Missense_MutationnovelR677I0.5
UCECchr1831354662Missense_MutationnovelH822Q0.38
UCECchr1831334114Missense_Mutationrs371165240V306A0.34
UCECchr1831343689Intronnovel0.35
UCECchr1831339855Missense_MutationnovelR506K0.44
UCECchr1831329996Missense_MutationnovelM159I0.29
UCECchr1831336505Missense_Mutationrs557916314R386H0.2
UCECchr1831339756Missense_MutationnovelR473I0.45
UCECchr1831326951Silentrs778383508F54F0.2
UCECchr1831339826Silentrs146820029P496P0.58
UCECchr1831340018SilentnovelV560V0.35
UCECchr1831346047Missense_MutationnovelR650I0.36
UCECchr1831343816Intronrs5744397120.55
UCECchr1831326918Silentrs753543956S43S0.5
UCECchr1831354327Nonsense_MutationNAG711*0.38
UCECchr1831355303Missense_Mutationrs778003137R1036Q0.35
UCECchr1831354605Silentrs747276192F803F0.52
UCECchr1831333609SilentnovelL235L0.42
UCECchr1831354652Missense_MutationnovelG819D0.34
UCECchr1831326935Missense_MutationNAR49H0.22
UCECchr1831326608Nonsense_Mutationrs397515639R26*0.16
UCECchr1831334187Missense_MutationnovelI330M0.24
UCECchr1831339756Missense_MutationnovelR473K0.2
UCECchr1831355076Silentrs200560952G960G0.37
UCECchr1831343583Missense_MutationnovelR607S0.34
UCECchr1831327000Missense_MutationNAA71T0.3
UCECchr1831331732Silentrs200895473D183D0.29
UCECchr1831355303Missense_Mutationrs778003137R1036Q0.35
UCECchr1831333684Silentrs140546771L260L0.17
UCECchr1831326912Nonsense_MutationnovelW41*0.2
UCECchr1831333596Missense_Mutationrs201719724G231D0.29
UCECchr18313182785'UTRnovel0.05
UCECchr1831343803Intronnovel0.33
UCECchr1831331744Silentrs778849751P187P0.3
UCECchr1831355020Missense_Mutationrs757887746E942K0.25
UCECchr1831331759Frame_Shift_DelnovelI194*0.38
UCECchr1831343725Intronnovel0.15
UCECchr1831354710SilentnovelT838T0.3
UCECchr1831354856Missense_Mutationrs368044134R887Q0.23
UCECchr1831354971Missense_MutationnovelR925S0.16
UCECchr1831343816Intronnovel0.1
UCECchr1831326951Silentrs778383508F54F0.65
UCECchr1831331839Missense_Mutationrs373006917R219Q0.53
UCECchr1831331856Missense_MutationnovelL225I0.12
UCECchr1831355020Missense_Mutationrs757887746E942K0.21
UCECchr18313181185'UTRnovel0.19
UCECchr18313181995'UTRnovel0.2
UCECchr1831334152Nonsense_MutationNAE319*0.29
UCECchr1831354365Silentrs372254735I723I0.28
UCECchr1831354492Nonsense_MutationNAE766*0.06
UCECchr1831326583Splice_RegionnovelV17V0.15
UCECchr1831328258Missense_MutationnovelP96T0.22
UCECchr1831331732Silentrs200895473D183D0.2
UCECchr1831355283Silentrs755411256S1029S0.23
UCECchr18313554403'UTRnovel0.4
UCECchr1831338412Missense_Mutationrs367878087M455V0.56
UCECchr1831354895Missense_Mutationrs761811223A900E0.13
UCECchr1831318322Missense_MutationnovelV8I0.28
UCECchr1831326898Missense_MutationnovelG37S0.33
UCECchr1831331744Silentrs778849751P187P0.41
UCECchr1831334121Missense_MutationnovelF308L0.31
UCECchr1831338367Missense_MutationnovelG440C0.32
UCECchr1831354458Missense_MutationnovelK754N0.3
UVMchr1831333640Missense_MutationnovelA246T0.49

Copy Number Variations (CNVs)
CancerTypeFreq Q-value

Survival Analysis
CancerP-value Q-value
MESO0.022

Kaplan-Meier Survival Analysis

SKCM0.00012

Kaplan-Meier Survival Analysis

LUSC0.049

Kaplan-Meier Survival Analysis

BRCA0.0065

Kaplan-Meier Survival Analysis

BLCA0.0015

Kaplan-Meier Survival Analysis

LIHC0.024

Kaplan-Meier Survival Analysis

LUAD0.042

Kaplan-Meier Survival Analysis

OV0.041

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000134760 (Gene tree)
Gene ID
1828
Gene Symbol
DSG1
Alias
CDHF4|DSG
Full Name
desmoglein 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
41,158 bases
Position
chr18:31,318,089-31,359,246
Accession
3048
RBP type
non-canonical RBP
Summary
This gene encodes a member of the desmoglein protein subfamily. Desmogleins, along with desmocollins, are cadherin-like transmembrane glycoproteins that are major components of the desmosome. Desmosomes are cell-cell junctions that help resist shearing forces and are found in high concentrations in cells subject to mechanical stress. This gene is found in a cluster with other desmoglein family members on chromosome 18. The encoded protein has been identified as a target of auto-antibodies in the autoimmune skin blistering disease pemphigus foliaceus. Disruption of this gene has also been associated with the skin diseases palmoplantar keratoderma and erythroderma. [provided by RefSeq, Feb 2015]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
17135055Pemphigus in the XXI century: new life to an old story.Autoimmunity2006 NovGrando SA-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000257192DSG1-2015045-ENSP000002571921049 (aa)-Q02413
ENST00000462981DSG1-2021857-ENSP00000462666408 (aa)-Q02413
Gene Model
Click here to download ENSG00000134760's gene model file
Pathways
Pathway IDPathway NameSource
hsa05150Staphylococcus aureus infectionKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000134760Platelet Function Tests2.0943100E-005-
ENSG00000134760Eosinophilic Esophagitis7E-620208534
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000134760rs72364771831322359GEosinophilic esophagitis (pediatric)20208534[1.39-3.55]2.22EFO_0004232
ENSG00000134760rs2005204311831338235?Yeast infection28928442[0.09-0.12] unit increase0.11EFO_0008412
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134760's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000134760DSG19933.879ENSG00000046604DSG29552.727Homo_sapiens
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001533cornified envelope-TASComponent
GO:0005509calcium ion binding1770008.NASFunction
GO:0005515protein binding24965446.IPIFunction
GO:0005829cytosol-TASComponent
GO:0005886plasma membrane-TASComponent
GO:0005911cell-cell junction7983064.IDAComponent
GO:0007043cell-cell junction assembly12485422.NASProcess
GO:0007156homophilic cell adhesion via plasma membrane adhesion molecules-IEAProcess
GO:0009898cytoplasmic side of plasma membrane7983064.IDAComponent
GO:0015643toxic substance binding12582396.NASFunction
GO:0016021integral component of membrane-IEAComponent
GO:0016324apical plasma membrane-IEAComponent
GO:0016328lateral plasma membrane-IEAComponent
GO:0016339calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules1770008.NASProcess
GO:0030057desmosome1711210.NASComponent
GO:0031424keratinization-TASProcess
GO:0032570response to progesterone-IEAProcess
GO:0043312neutrophil degranulation-TASProcess
GO:0045295gamma-catenin binding7983064.IPIFunction
GO:0050821protein stabilization7983064.IDAProcess
GO:0060135maternal process involved in female pregnancy-IEAProcess
GO:0070268cornification-TASProcess
GO:0098609cell-cell adhesion1711210.NASProcess
GO:0101003ficolin-1-rich granule membrane-TASComponent
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